Strain Fitness in Rahnella sp. WP5 around EX31_RS15350

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15345 and EX31_RS15350 overlap by 14 nucleotidesEX31_RS15350 and EX31_RS15355 are separated by 154 nucleotidesEX31_RS15355 and EX31_RS15360 are separated by 17 nucleotides EX31_RS15345: EX31_RS15345 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 20,494 to 21,879 _RS15345 EX31_RS15350: EX31_RS15350 - nitrogen fixation protein NifX, at 21,866 to 22,330 _RS15350 EX31_RS15355: EX31_RS15355 - hypothetical protein, at 22,485 to 22,823 _RS15355 EX31_RS15360: EX31_RS15360 - Fe-S cluster assembly protein NifU, at 22,841 to 23,668 _RS15360 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 20.869 kb on - strand, within EX31_RS15345at 20.892 kb on + strand, within EX31_RS15345at 20.994 kb on + strand, within EX31_RS15345at 20.994 kb on + strand, within EX31_RS15345at 20.995 kb on - strand, within EX31_RS15345at 20.995 kb on - strand, within EX31_RS15345at 21.051 kb on - strand, within EX31_RS15345at 21.051 kb on - strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.061 kb on + strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.062 kb on - strand, within EX31_RS15345at 21.104 kb on + strand, within EX31_RS15345at 21.415 kb on - strand, within EX31_RS15345at 21.435 kb on + strand, within EX31_RS15345at 21.436 kb on - strand, within EX31_RS15345at 21.590 kb on + strand, within EX31_RS15345at 21.700 kb on + strand, within EX31_RS15345at 21.700 kb on + strand, within EX31_RS15345at 21.739 kb on + strand, within EX31_RS15345at 21.740 kb on - strand, within EX31_RS15345at 21.812 kb on - strandat 21.992 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.112 kb on + strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.113 kb on - strand, within EX31_RS15350at 22.345 kb on + strandat 22.346 kb on - strandat 22.364 kb on - strandat 22.405 kb on + strandat 22.405 kb on + strandat 22.406 kb on - strandat 22.419 kb on - strandat 22.461 kb on + strandat 22.461 kb on + strandat 22.462 kb on - strandat 22.462 kb on - strandat 22.493 kb on - strandat 22.573 kb on + strand, within EX31_RS15355at 22.573 kb on + strand, within EX31_RS15355at 22.573 kb on + strand, within EX31_RS15355at 22.574 kb on - strand, within EX31_RS15355at 22.574 kb on - strand, within EX31_RS15355at 22.645 kb on + strand, within EX31_RS15355at 22.645 kb on + strand, within EX31_RS15355at 22.646 kb on - strand, within EX31_RS15355at 22.646 kb on - strand, within EX31_RS15355at 22.696 kb on + strand, within EX31_RS15355at 22.696 kb on + strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.700 kb on - strand, within EX31_RS15355at 22.747 kb on + strand, within EX31_RS15355at 22.748 kb on - strand, within EX31_RS15355at 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.799 kb on + strandat 22.800 kb on - strandat 22.800 kb on - strandat 22.835 kb on - strandat 22.850 kb on + strandat 23.198 kb on + strand, within EX31_RS15360at 23.198 kb on + strand, within EX31_RS15360at 23.198 kb on + strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.199 kb on - strand, within EX31_RS15360at 23.201 kb on + strand, within EX31_RS15360at 23.202 kb on - strand, within EX31_RS15360at 23.245 kb on + strand, within EX31_RS15360

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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20,869 - EX31_RS15345 0.27 +0.8
20,892 + EX31_RS15345 0.29 -0.1
20,994 + EX31_RS15345 0.36 +0.6
20,994 + EX31_RS15345 0.36 +0.1
20,995 - EX31_RS15345 0.36 +0.7
20,995 - EX31_RS15345 0.36 -1.4
21,051 - EX31_RS15345 0.40 +0.0
21,051 - EX31_RS15345 0.40 -0.9
21,061 + EX31_RS15345 0.41 -0.1
21,061 + EX31_RS15345 0.41 -0.2
21,061 + EX31_RS15345 0.41 +0.2
21,061 + EX31_RS15345 0.41 -0.3
21,061 + EX31_RS15345 0.41 +0.3
21,061 + EX31_RS15345 0.41 +1.1
21,061 + EX31_RS15345 0.41 +0.3
21,061 + EX31_RS15345 0.41 +0.4
21,061 + EX31_RS15345 0.41 -0.3
21,061 + EX31_RS15345 0.41 +0.3
21,061 + EX31_RS15345 0.41 +0.0
21,061 + EX31_RS15345 0.41 -0.4
21,062 - EX31_RS15345 0.41 -0.1
21,062 - EX31_RS15345 0.41 -0.2
21,062 - EX31_RS15345 0.41 +1.1
21,062 - EX31_RS15345 0.41 -0.7
21,062 - EX31_RS15345 0.41 +0.1
21,062 - EX31_RS15345 0.41 -1.5
21,062 - EX31_RS15345 0.41 +0.2
21,062 - EX31_RS15345 0.41 +0.7
21,062 - EX31_RS15345 0.41 -0.5
21,062 - EX31_RS15345 0.41 +0.4
21,062 - EX31_RS15345 0.41 -0.7
21,104 + EX31_RS15345 0.44 +0.1
21,415 - EX31_RS15345 0.66 -0.1
21,435 + EX31_RS15345 0.68 +0.3
21,436 - EX31_RS15345 0.68 -0.2
21,590 + EX31_RS15345 0.79 -0.0
21,700 + EX31_RS15345 0.87 -0.9
21,700 + EX31_RS15345 0.87 -0.8
21,739 + EX31_RS15345 0.90 -0.7
21,740 - EX31_RS15345 0.90 -0.1
21,812 - -0.3
21,992 + EX31_RS15350 0.27 -1.2
22,112 + EX31_RS15350 0.53 -0.1
22,112 + EX31_RS15350 0.53 -0.7
22,112 + EX31_RS15350 0.53 -0.6
22,113 - EX31_RS15350 0.53 -0.9
22,113 - EX31_RS15350 0.53 -0.3
22,113 - EX31_RS15350 0.53 -0.1
22,113 - EX31_RS15350 0.53 +0.6
22,345 + +0.2
22,346 - -0.5
22,364 - +0.2
22,405 + -0.2
22,405 + -0.2
22,406 - +1.0
22,419 - -0.1
22,461 + +0.1
22,461 + +0.1
22,462 - -0.2
22,462 - -0.5
22,493 - +0.0
22,573 + EX31_RS15355 0.26 -0.2
22,573 + EX31_RS15355 0.26 -0.1
22,573 + EX31_RS15355 0.26 +0.7
22,574 - EX31_RS15355 0.26 -0.4
22,574 - EX31_RS15355 0.26 +0.9
22,645 + EX31_RS15355 0.47 +0.1
22,645 + EX31_RS15355 0.47 +0.3
22,646 - EX31_RS15355 0.47 +0.2
22,646 - EX31_RS15355 0.47 +0.5
22,696 + EX31_RS15355 0.62 +0.4
22,696 + EX31_RS15355 0.62 +0.4
22,700 - EX31_RS15355 0.63 +0.1
22,700 - EX31_RS15355 0.63 -0.5
22,700 - EX31_RS15355 0.63 +0.8
22,700 - EX31_RS15355 0.63 +0.4
22,747 + EX31_RS15355 0.77 -0.8
22,748 - EX31_RS15355 0.78 +0.7
22,799 + -0.4
22,799 + -0.4
22,799 + +0.1
22,799 + -0.2
22,799 + -0.1
22,799 + -1.5
22,800 - +0.5
22,800 - +0.3
22,835 - -0.5
22,850 + -0.9
23,198 + EX31_RS15360 0.43 -0.2
23,198 + EX31_RS15360 0.43 -0.6
23,198 + EX31_RS15360 0.43 +0.4
23,199 - EX31_RS15360 0.43 +0.1
23,199 - EX31_RS15360 0.43 -0.5
23,199 - EX31_RS15360 0.43 -0.2
23,201 + EX31_RS15360 0.43 -0.5
23,202 - EX31_RS15360 0.44 +0.2
23,245 + EX31_RS15360 0.49 +0.3

Or see this region's nucleotide sequence