Strain Fitness in Rahnella sp. WP5 around EX31_RS11300

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11290 and EX31_RS11295 are separated by 21 nucleotidesEX31_RS11295 and EX31_RS11300 are separated by 34 nucleotidesEX31_RS11300 and EX31_RS11305 are separated by 77 nucleotidesEX31_RS11305 and EX31_RS11310 are separated by 11 nucleotides EX31_RS11290: EX31_RS11290 - flagellar basal-body rod protein FlgG, at 191,091 to 191,873 _RS11290 EX31_RS11295: EX31_RS11295 - flagellar basal body rod protein FlgF, at 191,895 to 192,650 _RS11295 EX31_RS11300: EX31_RS11300 - flagellar hook protein FlgE, at 192,685 to 193,929 _RS11300 EX31_RS11305: EX31_RS11305 - flagellar hook assembly protein FlgD, at 194,007 to 194,711 _RS11305 EX31_RS11310: EX31_RS11310 - flagellar basal body rod protein FlgC, at 194,723 to 195,127 _RS11310 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 191.771 kb on + strand, within EX31_RS11290at 191.772 kb on - strand, within EX31_RS11290at 191.811 kb on + strandat 191.812 kb on - strandat 191.812 kb on - strandat 191.856 kb on - strandat 191.857 kb on + strandat 191.857 kb on + strandat 191.857 kb on + strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.355 kb on + strand, within EX31_RS11295at 192.356 kb on - strand, within EX31_RS11295at 192.356 kb on - strand, within EX31_RS11295at 192.405 kb on - strand, within EX31_RS11295at 192.433 kb on + strand, within EX31_RS11295at 192.433 kb on + strand, within EX31_RS11295at 192.456 kb on - strand, within EX31_RS11295at 192.456 kb on - strand, within EX31_RS11295at 192.560 kb on + strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.634 kb on + strandat 192.634 kb on + strandat 192.635 kb on - strandat 192.639 kb on - strandat 192.639 kb on - strandat 192.687 kb on - strandat 192.753 kb on - strandat 192.757 kb on - strandat 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 193.046 kb on + strand, within EX31_RS11300at 193.233 kb on + strand, within EX31_RS11300at 193.234 kb on - strand, within EX31_RS11300at 193.331 kb on + strand, within EX31_RS11300at 193.331 kb on + strand, within EX31_RS11300at 193.332 kb on - strand, within EX31_RS11300at 193.332 kb on - strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.394 kb on + strand, within EX31_RS11300at 193.394 kb on + strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.612 kb on - strand, within EX31_RS11300at 193.612 kb on - strand, within EX31_RS11300at 193.653 kb on - strand, within EX31_RS11300at 193.943 kb on + strandat 193.943 kb on + strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 193.944 kb on - strandat 194.091 kb on + strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.092 kb on - strand, within EX31_RS11305at 194.110 kb on + strand, within EX31_RS11305at 194.110 kb on + strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.111 kb on - strand, within EX31_RS11305at 194.171 kb on - strand, within EX31_RS11305at 194.171 kb on - strand, within EX31_RS11305at 194.208 kb on - strand, within EX31_RS11305at 194.219 kb on + strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.220 kb on - strand, within EX31_RS11305at 194.221 kb on + strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.222 kb on - strand, within EX31_RS11305at 194.478 kb on - strand, within EX31_RS11305at 194.608 kb on - strand, within EX31_RS11305at 194.702 kb on + strandat 194.702 kb on + strandat 194.794 kb on - strand, within EX31_RS11310at 194.794 kb on - strand, within EX31_RS11310at 194.840 kb on + strand, within EX31_RS11310at 194.840 kb on + strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.841 kb on - strand, within EX31_RS11310at 194.859 kb on + strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.860 kb on - strand, within EX31_RS11310at 194.895 kb on + strand, within EX31_RS11310at 194.895 kb on + strand, within EX31_RS11310at 194.896 kb on - strand, within EX31_RS11310

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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191,771 + EX31_RS11290 0.87 -0.5
191,772 - EX31_RS11290 0.87 +0.9
191,811 + +0.5
191,812 - -0.5
191,812 - +0.3
191,856 - +0.3
191,857 + +0.5
191,857 + -1.5
191,857 + +1.1
191,858 - +0.3
191,858 - +0.5
191,858 - -0.7
191,858 - -0.7
191,858 - -0.2
191,858 - -0.9
191,858 - -0.4
191,858 - +0.6
191,858 - -0.4
192,119 + EX31_RS11295 0.30 -1.8
192,119 + EX31_RS11295 0.30 +0.5
192,119 + EX31_RS11295 0.30 +0.3
192,119 + EX31_RS11295 0.30 -0.2
192,120 - EX31_RS11295 0.30 -1.6
192,120 - EX31_RS11295 0.30 -0.3
192,120 - EX31_RS11295 0.30 -0.9
192,120 - EX31_RS11295 0.30 -0.6
192,355 + EX31_RS11295 0.61 -0.6
192,356 - EX31_RS11295 0.61 -0.6
192,356 - EX31_RS11295 0.61 +0.9
192,405 - EX31_RS11295 0.67 -0.5
192,433 + EX31_RS11295 0.71 +1.1
192,433 + EX31_RS11295 0.71 +0.4
192,456 - EX31_RS11295 0.74 +0.5
192,456 - EX31_RS11295 0.74 +0.1
192,560 + EX31_RS11295 0.88 +0.2
192,561 - EX31_RS11295 0.88 +0.0
192,561 - EX31_RS11295 0.88 -0.4
192,561 - EX31_RS11295 0.88 -0.2
192,634 + -0.0
192,634 + -0.8
192,635 - +1.3
192,639 - -0.4
192,639 - +0.8
192,687 - -0.8
192,753 - -1.6
192,757 - -0.1
192,987 - EX31_RS11300 0.24 +0.5
192,987 - EX31_RS11300 0.24 -1.0
192,987 - EX31_RS11300 0.24 +0.0
192,987 - EX31_RS11300 0.24 +1.3
193,046 + EX31_RS11300 0.29 +1.4
193,233 + EX31_RS11300 0.44 +1.9
193,234 - EX31_RS11300 0.44 +0.1
193,331 + EX31_RS11300 0.52 +0.3
193,331 + EX31_RS11300 0.52 +1.2
193,332 - EX31_RS11300 0.52 +0.5
193,332 - EX31_RS11300 0.52 +0.9
193,367 + EX31_RS11300 0.55 +0.1
193,367 + EX31_RS11300 0.55 +0.6
193,367 + EX31_RS11300 0.55 +0.9
193,368 - EX31_RS11300 0.55 -0.9
193,368 - EX31_RS11300 0.55 -0.3
193,368 - EX31_RS11300 0.55 -0.2
193,368 - EX31_RS11300 0.55 -0.4
193,388 + EX31_RS11300 0.56 -1.0
193,388 + EX31_RS11300 0.56 +0.6
193,388 + EX31_RS11300 0.56 +0.6
193,388 + EX31_RS11300 0.56 -0.4
193,388 + EX31_RS11300 0.56 -2.1
193,388 + EX31_RS11300 0.56 -0.4
193,388 + EX31_RS11300 0.56 -0.2
193,389 - EX31_RS11300 0.57 -1.4
193,389 - EX31_RS11300 0.57 +0.9
193,389 - EX31_RS11300 0.57 -0.0
193,389 - EX31_RS11300 0.57 +1.8
193,389 - EX31_RS11300 0.57 +0.5
193,389 - EX31_RS11300 0.57 -0.3
193,389 - EX31_RS11300 0.57 +0.6
193,389 - EX31_RS11300 0.57 +0.3
193,394 + EX31_RS11300 0.57 +1.6
193,394 + EX31_RS11300 0.57 +0.7
193,395 - EX31_RS11300 0.57 -0.6
193,395 - EX31_RS11300 0.57 -0.8
193,395 - EX31_RS11300 0.57 -0.5
193,395 - EX31_RS11300 0.57 -1.0
193,612 - EX31_RS11300 0.74 +0.3
193,612 - EX31_RS11300 0.74 -0.4
193,653 - EX31_RS11300 0.78 -1.0
193,943 + +0.3
193,943 + -0.1
193,944 - +0.5
193,944 - +0.8
193,944 - +1.0
193,944 - -0.2
193,944 - +0.2
194,091 + EX31_RS11305 0.12 -0.5
194,092 - EX31_RS11305 0.12 -0.4
194,092 - EX31_RS11305 0.12 +0.3
194,092 - EX31_RS11305 0.12 +0.7
194,092 - EX31_RS11305 0.12 -0.1
194,110 + EX31_RS11305 0.15 -0.6
194,110 + EX31_RS11305 0.15 -0.0
194,111 - EX31_RS11305 0.15 +0.1
194,111 - EX31_RS11305 0.15 -0.4
194,111 - EX31_RS11305 0.15 -0.3
194,111 - EX31_RS11305 0.15 -0.5
194,171 - EX31_RS11305 0.23 +0.2
194,171 - EX31_RS11305 0.23 -1.2
194,208 - EX31_RS11305 0.29 -0.4
194,219 + EX31_RS11305 0.30 -1.2
194,220 - EX31_RS11305 0.30 -0.7
194,220 - EX31_RS11305 0.30 -0.4
194,220 - EX31_RS11305 0.30 +0.1
194,220 - EX31_RS11305 0.30 -0.8
194,221 + EX31_RS11305 0.30 +0.8
194,222 - EX31_RS11305 0.30 -1.2
194,222 - EX31_RS11305 0.30 +0.6
194,222 - EX31_RS11305 0.30 +1.4
194,222 - EX31_RS11305 0.30 +0.0
194,222 - EX31_RS11305 0.30 -0.2
194,222 - EX31_RS11305 0.30 -0.2
194,222 - EX31_RS11305 0.30 +0.5
194,222 - EX31_RS11305 0.30 -0.2
194,478 - EX31_RS11305 0.67 +0.1
194,608 - EX31_RS11305 0.85 -0.6
194,702 + +1.2
194,702 + -0.0
194,794 - EX31_RS11310 0.18 +0.2
194,794 - EX31_RS11310 0.18 +0.5
194,840 + EX31_RS11310 0.29 -0.5
194,840 + EX31_RS11310 0.29 +0.4
194,841 - EX31_RS11310 0.29 +0.2
194,841 - EX31_RS11310 0.29 -0.1
194,841 - EX31_RS11310 0.29 -0.1
194,841 - EX31_RS11310 0.29 +0.3
194,841 - EX31_RS11310 0.29 -0.1
194,841 - EX31_RS11310 0.29 -0.4
194,841 - EX31_RS11310 0.29 +1.0
194,859 + EX31_RS11310 0.34 +2.0
194,860 - EX31_RS11310 0.34 -0.5
194,860 - EX31_RS11310 0.34 +0.6
194,860 - EX31_RS11310 0.34 -0.8
194,860 - EX31_RS11310 0.34 +1.5
194,895 + EX31_RS11310 0.42 -0.4
194,895 + EX31_RS11310 0.42 -0.2
194,896 - EX31_RS11310 0.43 +0.5

Or see this region's nucleotide sequence