Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10505 and EX31_RS10510 are separated by 244 nucleotides EX31_RS10510 and EX31_RS10515 are separated by 181 nucleotides EX31_RS10515 and EX31_RS10520 are separated by 65 nucleotides
EX31_RS10505: EX31_RS10505 - fatty acid metabolism transcriptional regulator FadR, at 15,414 to 16,136
_RS10505
EX31_RS10510: EX31_RS10510 - sodium/proton antiporter NhaB, at 16,381 to 17,958
_RS10510
EX31_RS10515: EX31_RS10515 - disulfide bond formation protein DsbB, at 18,140 to 18,670
_RS10515
EX31_RS10520: EX31_RS10520 - hypothetical protein, at 18,736 to 18,933
_RS10520
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.406 kb on - strand at 15.416 kb on - strand at 15.449 kb on + strand at 15.450 kb on - strand at 15.524 kb on - strand, within EX31_RS10505 at 15.524 kb on - strand, within EX31_RS10505 at 15.524 kb on - strand, within EX31_RS10505 at 15.601 kb on + strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.623 kb on - strand, within EX31_RS10505 at 15.623 kb on - strand, within EX31_RS10505 at 15.840 kb on - strand, within EX31_RS10505 at 15.893 kb on + strand, within EX31_RS10505 at 15.982 kb on - strand, within EX31_RS10505 at 16.080 kb on - strand at 16.092 kb on - strand at 16.092 kb on - strand at 16.092 kb on - strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.130 kb on + strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.163 kb on + strand at 16.164 kb on - strand at 16.167 kb on - strand at 16.173 kb on - strand at 16.174 kb on + strand at 16.174 kb on + strand at 16.174 kb on + strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.190 kb on - strand at 16.210 kb on + strand at 16.211 kb on - strand at 16.212 kb on + strand at 16.229 kb on + strand at 16.230 kb on - strand at 16.230 kb on - strand at 16.230 kb on - strand at 16.296 kb on - strand at 16.328 kb on + strand at 16.328 kb on + strand at 16.329 kb on - strand at 16.332 kb on + strand at 16.356 kb on + strand at 16.356 kb on + strand at 16.358 kb on + strand at 16.358 kb on + strand at 16.359 kb on - strand at 16.360 kb on + strand at 16.360 kb on + strand at 16.360 kb on + strand at 16.362 kb on + strand at 16.393 kb on + strand at 16.394 kb on - strand at 16.394 kb on - strand at 16.449 kb on - strand at 16.547 kb on + strand, within EX31_RS10510 at 16.560 kb on + strand, within EX31_RS10510 at 16.656 kb on + strand, within EX31_RS10510 at 16.702 kb on + strand, within EX31_RS10510 at 16.702 kb on + strand, within EX31_RS10510 at 16.724 kb on + strand, within EX31_RS10510 at 16.876 kb on + strand, within EX31_RS10510 at 16.935 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.156 kb on + strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.157 kb on - strand, within EX31_RS10510 at 17.168 kb on + strand, within EX31_RS10510 at 17.191 kb on + strand, within EX31_RS10510 at 17.279 kb on + strand, within EX31_RS10510 at 17.390 kb on + strand, within EX31_RS10510 at 17.390 kb on + strand, within EX31_RS10510 at 17.391 kb on - strand, within EX31_RS10510 at 17.528 kb on + strand, within EX31_RS10510 at 17.528 kb on + strand, within EX31_RS10510 at 17.567 kb on - strand, within EX31_RS10510 at 17.602 kb on - strand, within EX31_RS10510 at 17.624 kb on - strand, within EX31_RS10510 at 17.661 kb on + strand, within EX31_RS10510 at 17.700 kb on + strand, within EX31_RS10510 at 17.830 kb on + strand at 17.830 kb on + strand at 17.831 kb on - strand at 17.899 kb on + strand at 17.900 kb on - strand at 17.989 kb on + strand at 18.012 kb on - strand at 18.040 kb on + strand at 18.041 kb on - strand at 18.042 kb on + strand at 18.049 kb on + strand at 18.099 kb on + strand at 18.114 kb on + strand at 18.114 kb on + strand at 18.118 kb on + strand at 18.139 kb on + strand at 18.150 kb on - strand at 18.230 kb on + strand, within EX31_RS10515 at 18.231 kb on - strand, within EX31_RS10515 at 18.249 kb on + strand, within EX31_RS10515 at 18.253 kb on + strand, within EX31_RS10515 at 18.253 kb on + strand, within EX31_RS10515 at 18.253 kb on + strand, within EX31_RS10515 at 18.254 kb on - strand, within EX31_RS10515 at 18.271 kb on + strand, within EX31_RS10515 at 18.271 kb on + strand, within EX31_RS10515 at 18.271 kb on + strand, within EX31_RS10515 at 18.271 kb on + strand, within EX31_RS10515 at 18.271 kb on + strand, within EX31_RS10515 at 18.275 kb on + strand, within EX31_RS10515 at 18.276 kb on - strand, within EX31_RS10515 at 18.374 kb on + strand, within EX31_RS10515 at 18.760 kb on + strand, within EX31_RS10520 at 18.760 kb on + strand, within EX31_RS10520 at 18.760 kb on + strand, within EX31_RS10520 at 18.760 kb on + strand, within EX31_RS10520 at 18.760 kb on + strand, within EX31_RS10520 at 18.760 kb on + strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.761 kb on - strand, within EX31_RS10520 at 18.763 kb on + strand, within EX31_RS10520 at 18.764 kb on - strand, within EX31_RS10520 at 18.809 kb on + strand, within EX31_RS10520 at 18.812 kb on + strand, within EX31_RS10520 at 18.914 kb on + strand at 18.916 kb on + strand at 18.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 15,406 - +0.5 15,416 - +0.3 15,449 + -0.1 15,450 - -0.1 15,524 - EX31_RS10505 0.15 -0.9 15,524 - EX31_RS10505 0.15 -0.3 15,524 - EX31_RS10505 0.15 +0.3 15,601 + EX31_RS10505 0.26 +0.0 15,602 - EX31_RS10505 0.26 -2.1 15,602 - EX31_RS10505 0.26 +0.4 15,602 - EX31_RS10505 0.26 -0.4 15,602 - EX31_RS10505 0.26 +0.5 15,623 - EX31_RS10505 0.29 -0.0 15,623 - EX31_RS10505 0.29 +0.4 15,840 - EX31_RS10505 0.59 -0.8 15,893 + EX31_RS10505 0.66 +0.8 15,982 - EX31_RS10505 0.79 +1.7 16,080 - -0.6 16,092 - +1.3 16,092 - +0.7 16,092 - -0.8 16,093 + +0.5 16,093 + +0.6 16,093 + +0.9 16,093 + -1.4 16,093 + +0.9 16,093 + +0.8 16,094 - -0.1 16,094 - +1.0 16,094 - +1.7 16,094 - -0.6 16,094 - +0.7 16,094 - +1.3 16,094 - +0.2 16,094 - +0.7 16,094 - +0.2 16,130 + +1.2 16,131 - +0.2 16,131 - +0.8 16,131 - +0.5 16,163 + +0.8 16,164 - +0.4 16,167 - -0.2 16,173 - -0.7 16,174 + +0.8 16,174 + +0.8 16,174 + -0.3 16,175 - -0.2 16,175 - -1.4 16,175 - +0.6 16,175 - +0.6 16,175 - +0.1 16,175 - -0.1 16,175 - +0.7 16,175 - +0.4 16,175 - +1.2 16,175 - -0.7 16,190 - +0.3 16,210 + +0.2 16,211 - -1.4 16,212 + -0.0 16,229 + -1.0 16,230 - -0.8 16,230 - +0.3 16,230 - -0.6 16,296 - +0.9 16,328 + +0.2 16,328 + +0.3 16,329 - -0.3 16,332 + -1.2 16,356 + -0.3 16,356 + +0.3 16,358 + -0.0 16,358 + +0.2 16,359 - -0.9 16,360 + -0.6 16,360 + -0.3 16,360 + -0.6 16,362 + -0.6 16,393 + -0.5 16,394 - -0.3 16,394 - +0.2 16,449 - +0.4 16,547 + EX31_RS10510 0.11 -0.3 16,560 + EX31_RS10510 0.11 -0.4 16,656 + EX31_RS10510 0.17 +0.3 16,702 + EX31_RS10510 0.20 +0.2 16,702 + EX31_RS10510 0.20 +0.1 16,724 + EX31_RS10510 0.22 +0.0 16,876 + EX31_RS10510 0.31 +0.8 16,935 + EX31_RS10510 0.35 -1.1 17,156 + EX31_RS10510 0.49 -1.2 17,156 + EX31_RS10510 0.49 -1.5 17,156 + EX31_RS10510 0.49 -0.6 17,156 + EX31_RS10510 0.49 +0.1 17,156 + EX31_RS10510 0.49 -0.1 17,156 + EX31_RS10510 0.49 -0.9 17,156 + EX31_RS10510 0.49 +0.4 17,156 + EX31_RS10510 0.49 -0.5 17,156 + EX31_RS10510 0.49 -0.4 17,156 + EX31_RS10510 0.49 -0.4 17,157 - EX31_RS10510 0.49 +0.0 17,157 - EX31_RS10510 0.49 -0.7 17,157 - EX31_RS10510 0.49 -0.5 17,157 - EX31_RS10510 0.49 -1.2 17,157 - EX31_RS10510 0.49 +1.0 17,157 - EX31_RS10510 0.49 -0.4 17,168 + EX31_RS10510 0.50 -1.0 17,191 + EX31_RS10510 0.51 -0.4 17,279 + EX31_RS10510 0.57 -0.5 17,390 + EX31_RS10510 0.64 +0.3 17,390 + EX31_RS10510 0.64 -0.1 17,391 - EX31_RS10510 0.64 -1.1 17,528 + EX31_RS10510 0.73 -0.9 17,528 + EX31_RS10510 0.73 -0.4 17,567 - EX31_RS10510 0.75 +0.3 17,602 - EX31_RS10510 0.77 -1.9 17,624 - EX31_RS10510 0.79 +0.1 17,661 + EX31_RS10510 0.81 -0.2 17,700 + EX31_RS10510 0.84 -0.5 17,830 + +0.7 17,830 + +0.4 17,831 - +1.4 17,899 + -0.5 17,900 - -0.6 17,989 + -0.9 18,012 - +0.1 18,040 + +0.3 18,041 - +0.3 18,042 + -0.4 18,049 + +0.1 18,099 + -0.8 18,114 + -0.9 18,114 + +0.2 18,118 + -0.1 18,139 + +1.1 18,150 - +0.7 18,230 + EX31_RS10515 0.17 -0.6 18,231 - EX31_RS10515 0.17 -1.0 18,249 + EX31_RS10515 0.21 -0.3 18,253 + EX31_RS10515 0.21 +0.3 18,253 + EX31_RS10515 0.21 -0.8 18,253 + EX31_RS10515 0.21 +0.4 18,254 - EX31_RS10515 0.21 +0.0 18,271 + EX31_RS10515 0.25 +0.3 18,271 + EX31_RS10515 0.25 -0.5 18,271 + EX31_RS10515 0.25 -1.8 18,271 + EX31_RS10515 0.25 -0.4 18,271 + EX31_RS10515 0.25 +0.1 18,275 + EX31_RS10515 0.25 -1.5 18,276 - EX31_RS10515 0.26 +0.8 18,374 + EX31_RS10515 0.44 -0.9 18,760 + EX31_RS10520 0.12 -0.8 18,760 + EX31_RS10520 0.12 +0.8 18,760 + EX31_RS10520 0.12 +0.2 18,760 + EX31_RS10520 0.12 -0.2 18,760 + EX31_RS10520 0.12 +1.1 18,760 + EX31_RS10520 0.12 -1.2 18,761 - EX31_RS10520 0.13 -1.6 18,761 - EX31_RS10520 0.13 -0.5 18,761 - EX31_RS10520 0.13 -1.1 18,761 - EX31_RS10520 0.13 +0.2 18,761 - EX31_RS10520 0.13 -0.6 18,761 - EX31_RS10520 0.13 +0.6 18,761 - EX31_RS10520 0.13 -0.4 18,763 + EX31_RS10520 0.14 +0.2 18,764 - EX31_RS10520 0.14 +0.4 18,809 + EX31_RS10520 0.37 +0.4 18,812 + EX31_RS10520 0.38 -0.0 18,914 + -1.8 18,916 + +0.3 18,917 - -2.0
Or see this region's nucleotide sequence