Strain Fitness in Rahnella sp. WP5 around EX31_RS02255

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02250 and EX31_RS02255 are separated by 155 nucleotidesEX31_RS02255 and EX31_RS02260 are separated by 58 nucleotidesEX31_RS02260 and EX31_RS02265 are separated by 46 nucleotides EX31_RS02250: EX31_RS02250 - transcriptional regulator GcvA, at 486,741 to 487,646 _RS02250 EX31_RS02255: EX31_RS02255 - oxidoreductase, at 487,802 to 488,692 _RS02255 EX31_RS02260: EX31_RS02260 - chitin disaccharide deacetylase, at 488,751 to 489,509 _RS02260 EX31_RS02265: EX31_RS02265 - 6-phospho-beta-glucosidase, at 489,556 to 490,899 _RS02265 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 486.806 kb on + strandat 486.831 kb on - strandat 486.831 kb on - strandat 486.833 kb on + strand, within EX31_RS02250at 486.876 kb on - strand, within EX31_RS02250at 486.906 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.968 kb on + strand, within EX31_RS02250at 487.038 kb on + strand, within EX31_RS02250at 487.081 kb on + strand, within EX31_RS02250at 487.082 kb on - strand, within EX31_RS02250at 487.136 kb on + strand, within EX31_RS02250at 487.137 kb on - strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.185 kb on - strand, within EX31_RS02250at 487.185 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.203 kb on - strand, within EX31_RS02250at 487.203 kb on - strand, within EX31_RS02250at 487.211 kb on + strand, within EX31_RS02250at 487.228 kb on + strand, within EX31_RS02250at 487.228 kb on + strand, within EX31_RS02250at 487.256 kb on - strand, within EX31_RS02250at 487.271 kb on - strand, within EX31_RS02250at 487.356 kb on - strand, within EX31_RS02250at 487.356 kb on - strand, within EX31_RS02250at 487.381 kb on + strand, within EX31_RS02250at 487.415 kb on + strand, within EX31_RS02250at 487.416 kb on - strand, within EX31_RS02250at 487.543 kb on - strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.546 kb on - strand, within EX31_RS02250at 487.638 kb on + strandat 487.639 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.656 kb on + strandat 487.665 kb on + strandat 487.719 kb on + strandat 487.719 kb on + strandat 487.720 kb on - strandat 487.720 kb on - strandat 487.720 kb on - strandat 487.737 kb on - strandat 487.751 kb on - strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.775 kb on - strandat 487.819 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.831 kb on - strandat 487.831 kb on - strandat 487.971 kb on + strand, within EX31_RS02255at 488.081 kb on - strand, within EX31_RS02255at 488.135 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.543 kb on - strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.601 kb on + strand, within EX31_RS02255at 488.633 kb on - strandat 488.633 kb on - strandat 488.739 kb on - strandat 488.742 kb on + strandat 488.742 kb on + strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.745 kb on + strandat 488.753 kb on - strandat 488.754 kb on + strandat 488.754 kb on + strandat 488.755 kb on - strandat 488.823 kb on + strandat 488.823 kb on + strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.854 kb on + strand, within EX31_RS02260at 488.854 kb on + strand, within EX31_RS02260at 488.855 kb on - strand, within EX31_RS02260at 488.876 kb on + strand, within EX31_RS02260at 489.064 kb on - strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.493 kb on - strandat 489.498 kb on + strandat 489.499 kb on - strandat 489.503 kb on + strandat 489.504 kb on - strandat 489.509 kb on + strandat 489.510 kb on - strandat 489.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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486,806 + -0.5
486,831 - -0.2
486,831 - -0.3
486,833 + EX31_RS02250 0.10 +0.4
486,876 - EX31_RS02250 0.15 -0.2
486,906 - EX31_RS02250 0.18 +0.0
486,966 - EX31_RS02250 0.25 -0.8
486,966 - EX31_RS02250 0.25 -1.8
486,966 - EX31_RS02250 0.25 +0.1
486,968 + EX31_RS02250 0.25 +0.4
487,038 + EX31_RS02250 0.33 -0.2
487,081 + EX31_RS02250 0.38 +0.5
487,082 - EX31_RS02250 0.38 +0.7
487,136 + EX31_RS02250 0.44 -1.0
487,137 - EX31_RS02250 0.44 -2.0
487,184 + EX31_RS02250 0.49 -0.9
487,184 + EX31_RS02250 0.49 -0.1
487,184 + EX31_RS02250 0.49 -0.7
487,185 - EX31_RS02250 0.49 -0.1
487,185 - EX31_RS02250 0.49 -0.9
487,189 - EX31_RS02250 0.49 +0.1
487,189 - EX31_RS02250 0.49 +1.5
487,189 - EX31_RS02250 0.49 +0.4
487,203 - EX31_RS02250 0.51 -0.3
487,203 - EX31_RS02250 0.51 -1.0
487,211 + EX31_RS02250 0.52 +0.6
487,228 + EX31_RS02250 0.54 -0.2
487,228 + EX31_RS02250 0.54 -0.4
487,256 - EX31_RS02250 0.57 -0.0
487,271 - EX31_RS02250 0.58 +0.7
487,356 - EX31_RS02250 0.68 -0.5
487,356 - EX31_RS02250 0.68 +0.1
487,381 + EX31_RS02250 0.71 +0.6
487,415 + EX31_RS02250 0.74 +0.2
487,416 - EX31_RS02250 0.75 +0.3
487,543 - EX31_RS02250 0.89 -0.3
487,545 + EX31_RS02250 0.89 -0.4
487,545 + EX31_RS02250 0.89 -1.1
487,545 + EX31_RS02250 0.89 +0.1
487,545 + EX31_RS02250 0.89 -0.3
487,546 - EX31_RS02250 0.89 +0.0
487,638 + +1.5
487,639 - -0.3
487,650 - +1.2
487,650 - -0.1
487,650 - +1.8
487,656 + -0.8
487,665 + -0.5
487,719 + +0.5
487,719 + +0.0
487,720 - +0.8
487,720 - +1.0
487,720 - -0.1
487,737 - +0.8
487,751 - +0.0
487,774 + -0.4
487,774 + -0.3
487,774 + -1.2
487,774 + +0.4
487,775 - +0.2
487,819 + -0.7
487,830 + -1.3
487,830 + +0.4
487,830 + +0.4
487,831 - -1.1
487,831 - +0.0
487,971 + EX31_RS02255 0.19 +0.9
488,081 - EX31_RS02255 0.31 -1.0
488,135 + EX31_RS02255 0.37 +0.2
488,429 + EX31_RS02255 0.70 -0.1
488,429 + EX31_RS02255 0.70 +0.3
488,430 - EX31_RS02255 0.70 -0.7
488,430 - EX31_RS02255 0.70 -0.3
488,542 + EX31_RS02255 0.83 +1.0
488,542 + EX31_RS02255 0.83 +0.2
488,543 - EX31_RS02255 0.83 +0.9
488,586 + EX31_RS02255 0.88 -0.2
488,586 + EX31_RS02255 0.88 +0.8
488,586 + EX31_RS02255 0.88 -0.4
488,586 + EX31_RS02255 0.88 +1.3
488,586 + EX31_RS02255 0.88 -0.9
488,586 + EX31_RS02255 0.88 -1.5
488,586 + EX31_RS02255 0.88 -0.1
488,586 + EX31_RS02255 0.88 +0.7
488,586 + EX31_RS02255 0.88 -0.1
488,586 + EX31_RS02255 0.88 -1.1
488,586 + EX31_RS02255 0.88 -1.3
488,587 - EX31_RS02255 0.88 -1.8
488,587 - EX31_RS02255 0.88 -0.1
488,587 - EX31_RS02255 0.88 -1.2
488,587 - EX31_RS02255 0.88 +0.6
488,587 - EX31_RS02255 0.88 -0.2
488,587 - EX31_RS02255 0.88 -1.0
488,587 - EX31_RS02255 0.88 +0.9
488,601 + EX31_RS02255 0.90 -0.9
488,633 - +0.6
488,633 - +0.1
488,739 - +0.6
488,742 + -1.5
488,742 + +0.3
488,743 - +0.5
488,743 - +0.9
488,743 - +1.3
488,745 + +0.7
488,753 - -0.3
488,754 + -0.8
488,754 + -0.2
488,755 - -1.4
488,823 + +0.2
488,823 + +0.5
488,824 - -0.4
488,824 - -0.1
488,824 - +0.4
488,854 + EX31_RS02260 0.14 +0.5
488,854 + EX31_RS02260 0.14 -1.5
488,855 - EX31_RS02260 0.14 +0.9
488,876 + EX31_RS02260 0.16 -0.1
489,064 - EX31_RS02260 0.41 +1.3
489,122 + EX31_RS02260 0.49 +0.2
489,122 + EX31_RS02260 0.49 -0.8
489,122 + EX31_RS02260 0.49 +0.3
489,122 + EX31_RS02260 0.49 -0.5
489,122 + EX31_RS02260 0.49 -0.1
489,122 + EX31_RS02260 0.49 +0.1
489,122 + EX31_RS02260 0.49 +0.7
489,122 + EX31_RS02260 0.49 -0.7
489,123 - EX31_RS02260 0.49 +0.4
489,123 - EX31_RS02260 0.49 +1.9
489,123 - EX31_RS02260 0.49 +0.9
489,123 - EX31_RS02260 0.49 -1.3
489,123 - EX31_RS02260 0.49 -0.5
489,123 - EX31_RS02260 0.49 +1.0
489,123 - EX31_RS02260 0.49 +0.6
489,123 - EX31_RS02260 0.49 -0.1
489,123 - EX31_RS02260 0.49 -0.3
489,123 - EX31_RS02260 0.49 +0.7
489,123 - EX31_RS02260 0.49 +0.1
489,123 - EX31_RS02260 0.49 -0.6
489,493 - -0.4
489,498 + +0.1
489,499 - -0.1
489,503 + +0.8
489,504 - +0.5
489,509 + +0.1
489,510 - +0.6
489,631 + +0.0

Or see this region's nucleotide sequence