Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11700 and EX31_RS26005 are separated by 219 nucleotides EX31_RS26005 and EX31_RS11710 are separated by 87 nucleotides EX31_RS11710 and EX31_RS11720 are separated by 224 nucleotides
EX31_RS11700: EX31_RS11700 - hydrolase, at 283,815 to 284,390
_RS11700
EX31_RS26005: EX31_RS26005 - transposase, at 284,610 to 285,045
_RS26005
EX31_RS11710: EX31_RS11710 - hypothetical protein, at 285,133 to 285,597
_RS11710
EX31_RS11720: EX31_RS11720 - IS3 family transposase, at 285,822 to 286,996
_RS11720
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 283.612 kb on - strand at 283.615 kb on - strand at 283.615 kb on - strand at 283.638 kb on + strand at 283.694 kb on + strand at 283.708 kb on + strand at 283.710 kb on + strand at 283.735 kb on + strand at 283.735 kb on + strand at 283.735 kb on + strand at 283.735 kb on + strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.736 kb on - strand at 283.757 kb on + strand at 283.758 kb on - strand at 283.766 kb on + strand at 283.766 kb on + strand at 283.766 kb on + strand at 283.810 kb on + strand at 283.810 kb on + strand at 283.811 kb on - strand at 283.811 kb on - strand at 283.846 kb on + strand at 283.849 kb on + strand at 283.849 kb on + strand at 283.849 kb on + strand at 283.849 kb on + strand at 283.850 kb on - strand at 283.850 kb on - strand at 283.850 kb on - strand at 283.858 kb on + strand at 283.859 kb on - strand at 283.859 kb on - strand at 283.859 kb on - strand at 284.054 kb on - strand, within EX31_RS11700 at 284.158 kb on + strand, within EX31_RS11700 at 284.159 kb on - strand, within EX31_RS11700 at 284.180 kb on + strand, within EX31_RS11700 at 284.180 kb on + strand, within EX31_RS11700 at 284.228 kb on + strand, within EX31_RS11700 at 284.559 kb on + strand at 284.560 kb on - strand at 284.569 kb on + strand at 284.569 kb on + strand at 284.570 kb on - strand at 284.602 kb on + strand at 284.602 kb on + strand at 284.602 kb on + strand at 284.602 kb on + strand at 284.602 kb on + strand at 284.602 kb on + strand at 284.603 kb on - strand at 284.603 kb on - strand at 284.603 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.616 kb on - strand at 284.626 kb on - strand at 284.642 kb on - strand at 284.642 kb on - strand at 284.717 kb on + strand, within EX31_RS26005 at 284.724 kb on + strand, within EX31_RS26005 at 284.796 kb on - strand, within EX31_RS26005 at 284.907 kb on - strand, within EX31_RS26005 at 284.974 kb on + strand, within EX31_RS26005 at 284.974 kb on + strand, within EX31_RS26005 at 284.975 kb on - strand, within EX31_RS26005 at 284.980 kb on + strand, within EX31_RS26005 at 284.980 kb on + strand, within EX31_RS26005 at 284.980 kb on + strand, within EX31_RS26005 at 285.071 kb on - strand at 285.123 kb on + strand at 285.124 kb on - strand at 285.135 kb on - strand at 285.135 kb on - strand at 285.153 kb on - strand at 285.153 kb on - strand at 285.168 kb on + strand at 285.169 kb on - strand at 285.256 kb on - strand, within EX31_RS11710 at 285.261 kb on + strand, within EX31_RS11710 at 285.295 kb on + strand, within EX31_RS11710 at 285.299 kb on - strand, within EX31_RS11710 at 285.299 kb on - strand, within EX31_RS11710 at 285.301 kb on + strand, within EX31_RS11710 at 285.301 kb on + strand, within EX31_RS11710 at 285.319 kb on + strand, within EX31_RS11710 at 285.319 kb on + strand, within EX31_RS11710 at 285.319 kb on + strand, within EX31_RS11710 at 285.320 kb on - strand, within EX31_RS11710 at 285.334 kb on + strand, within EX31_RS11710 at 285.400 kb on - strand, within EX31_RS11710 at 285.404 kb on + strand, within EX31_RS11710 at 285.404 kb on + strand, within EX31_RS11710 at 285.405 kb on - strand, within EX31_RS11710 at 285.435 kb on + strand, within EX31_RS11710 at 285.436 kb on - strand, within EX31_RS11710 at 285.436 kb on - strand, within EX31_RS11710 at 285.436 kb on - strand, within EX31_RS11710 at 285.444 kb on + strand, within EX31_RS11710 at 285.445 kb on - strand, within EX31_RS11710 at 285.456 kb on + strand, within EX31_RS11710 at 285.457 kb on - strand, within EX31_RS11710 at 285.457 kb on - strand, within EX31_RS11710 at 285.457 kb on - strand, within EX31_RS11710 at 285.470 kb on + strand, within EX31_RS11710 at 285.470 kb on + strand, within EX31_RS11710 at 285.526 kb on + strand, within EX31_RS11710 at 285.527 kb on - strand, within EX31_RS11710 at 285.533 kb on + strand, within EX31_RS11710 at 285.534 kb on - strand, within EX31_RS11710 at 285.534 kb on - strand, within EX31_RS11710 at 285.570 kb on + strand at 285.571 kb on - strand at 285.576 kb on + strand at 285.576 kb on + strand at 285.577 kb on - strand at 285.577 kb on - strand at 285.577 kb on - strand at 285.580 kb on + strand at 285.580 kb on + strand at 285.580 kb on + strand at 285.580 kb on + strand at 285.580 kb on + strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.581 kb on - strand at 285.658 kb on + strand at 285.658 kb on + strand at 285.659 kb on - strand at 285.678 kb on + strand at 285.678 kb on + strand at 285.678 kb on + strand at 285.679 kb on - strand at 285.687 kb on + strand at 285.688 kb on - strand at 285.689 kb on + strand at 285.708 kb on - strand at 285.710 kb on + strand at 285.719 kb on - strand at 285.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 283,612 - +0.3 283,615 - -0.1 283,615 - +0.9 283,638 + -0.8 283,694 + -0.3 283,708 + +0.1 283,710 + -0.4 283,735 + -0.2 283,735 + -0.5 283,735 + -1.2 283,735 + -1.1 283,736 - -0.7 283,736 - -0.4 283,736 - -0.6 283,736 - +0.3 283,736 - -1.3 283,736 - +0.2 283,736 - +0.3 283,757 + -0.7 283,758 - -0.3 283,766 + +0.6 283,766 + -0.6 283,766 + +0.6 283,810 + +0.5 283,810 + -0.6 283,811 - +1.0 283,811 - +0.8 283,846 + +0.6 283,849 + -0.6 283,849 + -0.0 283,849 + +1.1 283,849 + +1.1 283,850 - +0.3 283,850 - -0.8 283,850 - -0.0 283,858 + -0.2 283,859 - -0.3 283,859 - -0.1 283,859 - +0.5 284,054 - EX31_RS11700 0.41 +0.5 284,158 + EX31_RS11700 0.60 +0.4 284,159 - EX31_RS11700 0.60 +0.2 284,180 + EX31_RS11700 0.63 -0.2 284,180 + EX31_RS11700 0.63 +0.4 284,228 + EX31_RS11700 0.72 +0.1 284,559 + +0.3 284,560 - -0.2 284,569 + +0.5 284,569 + +0.2 284,570 - -0.4 284,602 + -0.8 284,602 + +0.1 284,602 + -0.8 284,602 + -0.2 284,602 + +0.3 284,602 + -0.3 284,603 - -0.4 284,603 - +1.1 284,603 - +0.1 284,606 - +0.4 284,606 - +0.1 284,606 - -0.1 284,616 - -1.3 284,616 - -0.7 284,616 - +0.5 284,616 - +0.3 284,616 - -1.1 284,616 - +0.1 284,616 - +1.9 284,616 - +1.0 284,626 - -0.9 284,642 - -0.1 284,642 - -1.6 284,717 + EX31_RS26005 0.25 -1.5 284,724 + EX31_RS26005 0.26 +0.1 284,796 - EX31_RS26005 0.43 +1.0 284,907 - EX31_RS26005 0.68 -0.5 284,974 + EX31_RS26005 0.83 -0.2 284,974 + EX31_RS26005 0.83 -0.2 284,975 - EX31_RS26005 0.84 -0.1 284,980 + EX31_RS26005 0.85 -0.7 284,980 + EX31_RS26005 0.85 +0.2 284,980 + EX31_RS26005 0.85 -1.9 285,071 - +0.0 285,123 + +1.3 285,124 - -0.7 285,135 - +0.2 285,135 - +2.6 285,153 - +0.5 285,153 - +0.2 285,168 + +0.1 285,169 - -0.6 285,256 - EX31_RS11710 0.26 -1.1 285,261 + EX31_RS11710 0.28 +0.1 285,295 + EX31_RS11710 0.35 +0.6 285,299 - EX31_RS11710 0.36 -1.0 285,299 - EX31_RS11710 0.36 -0.7 285,301 + EX31_RS11710 0.36 -0.4 285,301 + EX31_RS11710 0.36 -0.6 285,319 + EX31_RS11710 0.40 +0.2 285,319 + EX31_RS11710 0.40 +0.9 285,319 + EX31_RS11710 0.40 +0.3 285,320 - EX31_RS11710 0.40 -0.3 285,334 + EX31_RS11710 0.43 -0.2 285,400 - EX31_RS11710 0.57 -0.1 285,404 + EX31_RS11710 0.58 -0.1 285,404 + EX31_RS11710 0.58 +0.9 285,405 - EX31_RS11710 0.58 +0.3 285,435 + EX31_RS11710 0.65 -0.8 285,436 - EX31_RS11710 0.65 -0.8 285,436 - EX31_RS11710 0.65 +0.2 285,436 - EX31_RS11710 0.65 -1.8 285,444 + EX31_RS11710 0.67 -1.0 285,445 - EX31_RS11710 0.67 +0.7 285,456 + EX31_RS11710 0.69 -0.9 285,457 - EX31_RS11710 0.70 +0.8 285,457 - EX31_RS11710 0.70 -0.5 285,457 - EX31_RS11710 0.70 -0.3 285,470 + EX31_RS11710 0.72 -0.5 285,470 + EX31_RS11710 0.72 +0.3 285,526 + EX31_RS11710 0.85 -0.2 285,527 - EX31_RS11710 0.85 -0.1 285,533 + EX31_RS11710 0.86 +0.3 285,534 - EX31_RS11710 0.86 -0.1 285,534 - EX31_RS11710 0.86 -0.3 285,570 + -0.8 285,571 - +0.4 285,576 + +0.0 285,576 + +2.0 285,577 - +0.8 285,577 - +0.6 285,577 - -0.2 285,580 + +0.4 285,580 + -1.1 285,580 + -0.8 285,580 + -1.0 285,580 + +0.7 285,581 - +0.4 285,581 - -0.1 285,581 - -0.8 285,581 - +1.0 285,581 - +0.0 285,581 - +0.2 285,581 - -1.6 285,581 - +0.0 285,581 - -0.7 285,581 - +0.3 285,658 + -0.0 285,658 + +0.7 285,659 - +0.2 285,678 + -1.0 285,678 + -1.0 285,678 + +0.8 285,679 - +0.5 285,687 + +0.7 285,688 - -0.4 285,689 + -1.0 285,708 - +0.5 285,710 + +0.2 285,719 - +1.6 285,781 - +1.2
Or see this region's nucleotide sequence