Strain Fitness in Rahnella sp. WP5 around EX31_RS25450

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25450 and EX31_RS16395 are separated by 331 nucleotides EX31_RS25450: EX31_RS25450 - helix-turn-helix domain-containing protein, at 29,206 to 29,451 _RS25450 EX31_RS16395: EX31_RS16395 - MFS transporter, at 29,783 to 31,048 _RS16395 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.240 kb on + strandat 28.342 kb on + strandat 28.342 kb on + strandat 28.342 kb on + strandat 28.343 kb on - strandat 28.343 kb on - strandat 28.347 kb on - strandat 28.404 kb on + strandat 28.413 kb on - strandat 28.418 kb on + strandat 28.419 kb on - strandat 28.431 kb on + strandat 28.431 kb on + strandat 28.432 kb on - strandat 28.432 kb on - strandat 28.484 kb on + strandat 28.525 kb on - strandat 28.591 kb on + strandat 28.592 kb on - strandat 28.601 kb on + strandat 28.602 kb on - strandat 28.603 kb on + strandat 28.604 kb on - strandat 28.604 kb on - strandat 28.604 kb on - strandat 28.604 kb on - strandat 28.604 kb on - strandat 28.604 kb on - strandat 28.641 kb on + strandat 28.642 kb on - strandat 28.658 kb on + strandat 28.661 kb on + strandat 28.661 kb on + strandat 28.710 kb on + strandat 28.711 kb on - strandat 28.711 kb on - strandat 28.730 kb on - strandat 28.755 kb on + strandat 28.756 kb on - strandat 28.756 kb on - strandat 28.756 kb on - strandat 28.756 kb on - strandat 28.756 kb on - strandat 28.861 kb on - strandat 28.861 kb on - strandat 28.882 kb on + strandat 28.882 kb on + strandat 28.893 kb on - strandat 28.919 kb on + strandat 28.954 kb on + strandat 28.954 kb on + strandat 28.954 kb on + strandat 28.954 kb on + strandat 28.955 kb on - strandat 28.955 kb on - strandat 28.955 kb on - strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.956 kb on + strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.957 kb on - strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.960 kb on + strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.961 kb on - strandat 28.962 kb on + strandat 28.962 kb on + strandat 28.962 kb on + strandat 28.962 kb on + strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.963 kb on - strandat 28.969 kb on + strandat 28.970 kb on - strandat 28.972 kb on + strandat 28.972 kb on + strandat 29.022 kb on - strandat 29.022 kb on - strandat 29.025 kb on - strandat 29.025 kb on - strandat 29.036 kb on + strandat 29.036 kb on + strandat 29.098 kb on + strandat 29.099 kb on - strandat 29.108 kb on - strandat 29.144 kb on + strandat 29.144 kb on + strandat 29.200 kb on + strandat 29.200 kb on + strandat 29.200 kb on + strandat 29.200 kb on + strandat 29.201 kb on - strandat 29.323 kb on + strand, within EX31_RS25450at 29.323 kb on + strand, within EX31_RS25450at 29.323 kb on + strand, within EX31_RS25450at 29.323 kb on + strand, within EX31_RS25450at 29.323 kb on + strand, within EX31_RS25450at 29.324 kb on - strand, within EX31_RS25450at 29.324 kb on - strand, within EX31_RS25450at 29.379 kb on + strand, within EX31_RS25450at 29.380 kb on - strand, within EX31_RS25450at 29.392 kb on - strand, within EX31_RS25450at 29.440 kb on + strandat 29.440 kb on + strandat 29.441 kb on - strandat 29.532 kb on + strandat 29.552 kb on + strandat 29.568 kb on + strandat 29.568 kb on + strandat 29.573 kb on + strandat 29.573 kb on + strandat 29.574 kb on - strandat 29.574 kb on - strandat 29.600 kb on - strandat 29.600 kb on - strandat 29.604 kb on - strandat 29.648 kb on - strandat 29.712 kb on - strandat 29.741 kb on + strandat 29.818 kb on + strandat 29.867 kb on + strandat 29.867 kb on + strandat 29.942 kb on - strand, within EX31_RS16395at 29.945 kb on + strand, within EX31_RS16395at 29.991 kb on + strand, within EX31_RS16395at 29.991 kb on + strand, within EX31_RS16395at 29.992 kb on - strand, within EX31_RS16395at 30.008 kb on + strand, within EX31_RS16395at 30.009 kb on - strand, within EX31_RS16395at 30.066 kb on + strand, within EX31_RS16395at 30.066 kb on + strand, within EX31_RS16395at 30.067 kb on - strand, within EX31_RS16395at 30.067 kb on - strand, within EX31_RS16395at 30.067 kb on - strand, within EX31_RS16395at 30.114 kb on - strand, within EX31_RS16395at 30.164 kb on - strand, within EX31_RS16395at 30.195 kb on + strand, within EX31_RS16395at 30.195 kb on + strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.196 kb on - strand, within EX31_RS16395at 30.199 kb on + strand, within EX31_RS16395at 30.200 kb on - strand, within EX31_RS16395at 30.200 kb on - strand, within EX31_RS16395at 30.200 kb on - strand, within EX31_RS16395at 30.203 kb on + strand, within EX31_RS16395at 30.204 kb on - strand, within EX31_RS16395at 30.204 kb on - strand, within EX31_RS16395at 30.206 kb on + strand, within EX31_RS16395at 30.286 kb on + strand, within EX31_RS16395at 30.291 kb on - strand, within EX31_RS16395at 30.291 kb on - strand, within EX31_RS16395at 30.320 kb on + strand, within EX31_RS16395at 30.333 kb on - strand, within EX31_RS16395at 30.333 kb on - strand, within EX31_RS16395at 30.385 kb on + strand, within EX31_RS16395at 30.411 kb on + strand, within EX31_RS16395

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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28,240 + -0.3
28,342 + -0.0
28,342 + +0.2
28,342 + -0.5
28,343 - +0.5
28,343 - -0.0
28,347 - -0.5
28,404 + -1.0
28,413 - +0.4
28,418 + +0.3
28,419 - -0.5
28,431 + +0.3
28,431 + +0.0
28,432 - -0.4
28,432 - +0.2
28,484 + +0.2
28,525 - -0.3
28,591 + +0.8
28,592 - -0.4
28,601 + +0.1
28,602 - +0.3
28,603 + +0.4
28,604 - +0.2
28,604 - +0.6
28,604 - -0.2
28,604 - -0.6
28,604 - -0.4
28,604 - -0.4
28,641 + -0.3
28,642 - -1.3
28,658 + +0.2
28,661 + -0.3
28,661 + -0.3
28,710 + -0.4
28,711 - +1.5
28,711 - +0.4
28,730 - +0.2
28,755 + -1.1
28,756 - -0.2
28,756 - -0.6
28,756 - +0.3
28,756 - +0.4
28,756 - +1.0
28,861 - +1.8
28,861 - -0.7
28,882 + +1.4
28,882 + +0.7
28,893 - -1.6
28,919 + -1.2
28,954 + +0.2
28,954 + +0.7
28,954 + +0.0
28,954 + +0.3
28,955 - +0.2
28,955 - +0.7
28,955 - -0.6
28,956 + +0.0
28,956 + +0.3
28,956 + -0.1
28,956 + +0.3
28,956 + -0.4
28,956 + +0.2
28,956 + -0.2
28,956 + +0.9
28,956 + -0.4
28,956 + +0.3
28,956 + -0.0
28,957 - -0.3
28,957 - -0.3
28,957 - +0.1
28,957 - -0.5
28,957 - +0.2
28,957 - +0.1
28,957 - +0.2
28,957 - +0.2
28,957 - +1.5
28,957 - -0.1
28,957 - -2.4
28,960 + +0.9
28,960 + -0.3
28,960 + +0.3
28,960 + -0.2
28,960 + +0.2
28,960 + +0.3
28,960 + +0.0
28,960 + +0.0
28,960 + +0.3
28,960 + -0.1
28,960 + +0.6
28,960 + -0.1
28,960 + -0.4
28,960 + -0.2
28,960 + -0.7
28,960 + -0.4
28,960 + -0.2
28,960 + -0.9
28,960 + -0.3
28,960 + +0.2
28,960 + -0.2
28,960 + +0.7
28,960 + -0.6
28,960 + +0.1
28,960 + -0.3
28,960 + +0.4
28,960 + -0.0
28,960 + -1.4
28,960 + -0.5
28,960 + -0.1
28,960 + -0.6
28,961 - +0.5
28,961 - +0.1
28,961 - -0.5
28,961 - -0.2
28,961 - -0.4
28,961 - +0.9
28,961 - -1.0
28,961 - +0.0
28,961 - +1.1
28,961 - +0.1
28,961 - -0.7
28,961 - -0.6
28,961 - +0.3
28,961 - +0.3
28,961 - +0.2
28,961 - -0.3
28,961 - -0.3
28,961 - -1.1
28,961 - +0.3
28,961 - +1.7
28,961 - +0.5
28,961 - +0.6
28,961 - +0.0
28,961 - -1.1
28,961 - -0.7
28,961 - -0.5
28,961 - -0.1
28,961 - +0.6
28,961 - +0.2
28,961 - +1.0
28,961 - +0.1
28,962 + +0.4
28,962 + +0.1
28,962 + -0.1
28,962 + +1.6
28,963 - +0.3
28,963 - -0.2
28,963 - +0.2
28,963 - +2.2
28,963 - +0.4
28,963 - -0.4
28,963 - -0.4
28,963 - +1.2
28,963 - +0.2
28,963 - +0.2
28,963 - +0.5
28,963 - +0.2
28,963 - +0.5
28,969 + +0.4
28,970 - -1.3
28,972 + -0.4
28,972 + +0.1
29,022 - -1.2
29,022 - +0.7
29,025 - +0.0
29,025 - +0.1
29,036 + +0.8
29,036 + +0.5
29,098 + +0.9
29,099 - -0.0
29,108 - +0.6
29,144 + -0.3
29,144 + -0.3
29,200 + +0.9
29,200 + +0.9
29,200 + -1.2
29,200 + +0.4
29,201 - +0.2
29,323 + EX31_RS25450 0.48 -0.1
29,323 + EX31_RS25450 0.48 -1.1
29,323 + EX31_RS25450 0.48 +1.0
29,323 + EX31_RS25450 0.48 +0.3
29,323 + EX31_RS25450 0.48 +0.3
29,324 - EX31_RS25450 0.48 +0.1
29,324 - EX31_RS25450 0.48 -1.3
29,379 + EX31_RS25450 0.70 -2.8
29,380 - EX31_RS25450 0.71 -0.9
29,392 - EX31_RS25450 0.76 -0.5
29,440 + +0.8
29,440 + -0.3
29,441 - +0.5
29,532 + -1.7
29,552 + -0.0
29,568 + +0.0
29,568 + -1.4
29,573 + -1.1
29,573 + -0.2
29,574 - -0.3
29,574 - +0.7
29,600 - +0.1
29,600 - +0.8
29,604 - -0.2
29,648 - +0.3
29,712 - +0.7
29,741 + +0.8
29,818 + -0.1
29,867 + +0.1
29,867 + +0.5
29,942 - EX31_RS16395 0.13 +0.2
29,945 + EX31_RS16395 0.13 +2.6
29,991 + EX31_RS16395 0.16 +0.8
29,991 + EX31_RS16395 0.16 +0.9
29,992 - EX31_RS16395 0.17 +1.4
30,008 + EX31_RS16395 0.18 -0.6
30,009 - EX31_RS16395 0.18 -0.1
30,066 + EX31_RS16395 0.22 +0.4
30,066 + EX31_RS16395 0.22 +0.9
30,067 - EX31_RS16395 0.22 +0.2
30,067 - EX31_RS16395 0.22 -1.0
30,067 - EX31_RS16395 0.22 +1.3
30,114 - EX31_RS16395 0.26 -0.3
30,164 - EX31_RS16395 0.30 -0.8
30,195 + EX31_RS16395 0.33 +0.7
30,195 + EX31_RS16395 0.33 +2.1
30,196 - EX31_RS16395 0.33 -0.8
30,196 - EX31_RS16395 0.33 -1.0
30,196 - EX31_RS16395 0.33 -0.5
30,196 - EX31_RS16395 0.33 -1.7
30,196 - EX31_RS16395 0.33 -0.2
30,196 - EX31_RS16395 0.33 +0.8
30,196 - EX31_RS16395 0.33 -0.3
30,199 + EX31_RS16395 0.33 -1.0
30,200 - EX31_RS16395 0.33 -0.3
30,200 - EX31_RS16395 0.33 +0.6
30,200 - EX31_RS16395 0.33 -0.3
30,203 + EX31_RS16395 0.33 +1.8
30,204 - EX31_RS16395 0.33 +0.4
30,204 - EX31_RS16395 0.33 +1.1
30,206 + EX31_RS16395 0.33 +0.5
30,286 + EX31_RS16395 0.40 +1.3
30,291 - EX31_RS16395 0.40 +0.1
30,291 - EX31_RS16395 0.40 +1.1
30,320 + EX31_RS16395 0.42 -0.2
30,333 - EX31_RS16395 0.43 -0.6
30,333 - EX31_RS16395 0.43 -0.2
30,385 + EX31_RS16395 0.48 +0.6
30,411 + EX31_RS16395 0.50 +0.4

Or see this region's nucleotide sequence