Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25690 and EX31_RS24790 are separated by 665 nucleotides EX31_RS24790 and EX31_RS24795 are separated by 200 nucleotides
EX31_RS25690: EX31_RS25690 - tyrosine-type recombinase/integrase, at 726,971 to 727,123
_RS25690
EX31_RS24790: EX31_RS24790 - cation transporter, at 727,789 to 728,700
_RS24790
EX31_RS24795: EX31_RS24795 - hypothetical protein, at 728,901 to 729,689
_RS24795
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.934 kb on - strand at 726.934 kb on - strand at 726.934 kb on - strand at 726.973 kb on - strand at 726.973 kb on - strand at 726.975 kb on - strand at 726.975 kb on - strand at 726.975 kb on - strand at 727.034 kb on - strand, within EX31_RS25690 at 727.034 kb on - strand, within EX31_RS25690 at 727.034 kb on - strand, within EX31_RS25690 at 727.044 kb on - strand, within EX31_RS25690 at 727.119 kb on + strand at 727.119 kb on + strand at 727.120 kb on - strand at 727.120 kb on - strand at 727.231 kb on - strand at 727.252 kb on - strand at 727.255 kb on + strand at 727.256 kb on - strand at 727.256 kb on - strand at 727.258 kb on - strand at 727.274 kb on - strand at 727.395 kb on + strand at 727.395 kb on + strand at 727.396 kb on - strand at 727.417 kb on + strand at 727.417 kb on + strand at 727.417 kb on + strand at 727.418 kb on - strand at 727.471 kb on + strand at 727.572 kb on + strand at 727.572 kb on + strand at 727.605 kb on + strand at 727.605 kb on + strand at 727.623 kb on + strand at 727.626 kb on + strand at 727.626 kb on + strand at 727.626 kb on + strand at 727.627 kb on - strand at 727.628 kb on + strand at 727.628 kb on + strand at 727.628 kb on + strand at 727.656 kb on + strand at 727.707 kb on + strand at 727.708 kb on - strand at 727.709 kb on + strand at 727.730 kb on - strand at 727.730 kb on - strand at 727.828 kb on + strand at 727.871 kb on + strand at 728.001 kb on + strand, within EX31_RS24790 at 728.032 kb on + strand, within EX31_RS24790 at 728.090 kb on - strand, within EX31_RS24790 at 728.090 kb on - strand, within EX31_RS24790 at 728.092 kb on - strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.106 kb on + strand, within EX31_RS24790 at 728.107 kb on - strand, within EX31_RS24790 at 728.107 kb on - strand, within EX31_RS24790 at 728.195 kb on + strand, within EX31_RS24790 at 728.196 kb on - strand, within EX31_RS24790 at 728.201 kb on + strand, within EX31_RS24790 at 728.201 kb on + strand, within EX31_RS24790 at 728.308 kb on + strand, within EX31_RS24790 at 728.340 kb on + strand, within EX31_RS24790 at 728.598 kb on + strand, within EX31_RS24790 at 728.631 kb on + strand at 728.631 kb on + strand at 728.631 kb on + strand at 728.632 kb on - strand at 728.632 kb on - strand at 728.652 kb on - strand at 728.710 kb on + strand at 728.789 kb on - strand at 728.807 kb on + strand at 728.827 kb on + strand at 728.830 kb on + strand at 728.879 kb on - strand at 728.879 kb on - strand at 728.897 kb on + strand at 728.898 kb on - strand at 728.999 kb on - strand, within EX31_RS24795 at 728.999 kb on - strand, within EX31_RS24795 at 729.053 kb on + strand, within EX31_RS24795 at 729.053 kb on + strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.054 kb on - strand, within EX31_RS24795 at 729.055 kb on + strand, within EX31_RS24795 at 729.055 kb on + strand, within EX31_RS24795 at 729.055 kb on + strand, within EX31_RS24795 at 729.055 kb on + strand, within EX31_RS24795 at 729.056 kb on - strand, within EX31_RS24795 at 729.056 kb on - strand, within EX31_RS24795 at 729.074 kb on + strand, within EX31_RS24795 at 729.074 kb on + strand, within EX31_RS24795 at 729.075 kb on - strand, within EX31_RS24795 at 729.076 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.086 kb on + strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.087 kb on - strand, within EX31_RS24795 at 729.243 kb on + strand, within EX31_RS24795 at 729.243 kb on + strand, within EX31_RS24795 at 729.243 kb on + strand, within EX31_RS24795 at 729.244 kb on - strand, within EX31_RS24795 at 729.380 kb on + strand, within EX31_RS24795 at 729.381 kb on - strand, within EX31_RS24795 at 729.401 kb on + strand, within EX31_RS24795 at 729.402 kb on - strand, within EX31_RS24795 at 729.402 kb on - strand, within EX31_RS24795 at 729.427 kb on + strand, within EX31_RS24795 at 729.427 kb on + strand, within EX31_RS24795 at 729.428 kb on - strand, within EX31_RS24795 at 729.428 kb on - strand, within EX31_RS24795 at 729.435 kb on + strand, within EX31_RS24795 at 729.441 kb on + strand, within EX31_RS24795 at 729.442 kb on - strand, within EX31_RS24795 at 729.547 kb on + strand, within EX31_RS24795 at 729.548 kb on - strand, within EX31_RS24795 at 729.550 kb on + strand, within EX31_RS24795 at 729.550 kb on + strand, within EX31_RS24795 at 729.551 kb on - strand, within EX31_RS24795 at 729.576 kb on - strand, within EX31_RS24795 at 729.614 kb on + strand at 729.660 kb on + strand at 729.661 kb on - strand at 729.661 kb on - strand at 729.661 kb on - strand at 729.689 kb on + strand at 729.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 726,934 - -0.5 726,934 - -1.2 726,934 - +0.9 726,973 - -0.2 726,973 - -0.2 726,975 - -0.8 726,975 - +0.3 726,975 - +0.0 727,034 - EX31_RS25690 0.41 +0.3 727,034 - EX31_RS25690 0.41 +0.6 727,034 - EX31_RS25690 0.41 -0.3 727,044 - EX31_RS25690 0.48 -1.3 727,119 + -0.3 727,119 + +1.1 727,120 - -1.0 727,120 - -0.3 727,231 - -0.0 727,252 - -1.2 727,255 + -0.7 727,256 - +0.6 727,256 - -0.6 727,258 - +0.1 727,274 - -0.1 727,395 + +1.5 727,395 + +1.5 727,396 - -0.1 727,417 + +0.2 727,417 + +1.2 727,417 + -0.2 727,418 - +0.7 727,471 + +0.7 727,572 + +1.4 727,572 + -0.3 727,605 + +0.2 727,605 + +0.2 727,623 + +1.3 727,626 + -0.3 727,626 + +0.8 727,626 + -1.0 727,627 - +0.2 727,628 + +0.9 727,628 + +0.3 727,628 + +0.2 727,656 + +0.7 727,707 + +0.1 727,708 - +0.8 727,709 + +0.4 727,730 - -0.7 727,730 - -0.9 727,828 + -0.7 727,871 + +0.1 728,001 + EX31_RS24790 0.23 -0.4 728,032 + EX31_RS24790 0.27 -0.5 728,090 - EX31_RS24790 0.33 -1.8 728,090 - EX31_RS24790 0.33 +0.1 728,092 - EX31_RS24790 0.33 -0.2 728,106 + EX31_RS24790 0.35 -0.4 728,106 + EX31_RS24790 0.35 -0.0 728,106 + EX31_RS24790 0.35 +0.3 728,106 + EX31_RS24790 0.35 -1.3 728,106 + EX31_RS24790 0.35 -1.0 728,106 + EX31_RS24790 0.35 -0.5 728,106 + EX31_RS24790 0.35 -0.5 728,107 - EX31_RS24790 0.35 +1.1 728,107 - EX31_RS24790 0.35 -1.7 728,195 + EX31_RS24790 0.45 -0.3 728,196 - EX31_RS24790 0.45 -0.1 728,201 + EX31_RS24790 0.45 +0.4 728,201 + EX31_RS24790 0.45 -0.4 728,308 + EX31_RS24790 0.57 -0.3 728,340 + EX31_RS24790 0.60 -0.3 728,598 + EX31_RS24790 0.89 +0.4 728,631 + +0.2 728,631 + +0.1 728,631 + -0.1 728,632 - -0.5 728,632 - -0.8 728,652 - -0.0 728,710 + +0.5 728,789 - +0.3 728,807 + -0.7 728,827 + -0.5 728,830 + +0.1 728,879 - +0.4 728,879 - +0.2 728,897 + +1.2 728,898 - -0.5 728,999 - EX31_RS24795 0.12 -2.5 728,999 - EX31_RS24795 0.12 +0.7 729,053 + EX31_RS24795 0.19 +0.2 729,053 + EX31_RS24795 0.19 +0.9 729,054 - EX31_RS24795 0.19 +0.4 729,054 - EX31_RS24795 0.19 -0.5 729,054 - EX31_RS24795 0.19 +0.3 729,054 - EX31_RS24795 0.19 +1.8 729,054 - EX31_RS24795 0.19 +0.4 729,054 - EX31_RS24795 0.19 +1.3 729,055 + EX31_RS24795 0.20 -1.0 729,055 + EX31_RS24795 0.20 -0.2 729,055 + EX31_RS24795 0.20 +0.2 729,055 + EX31_RS24795 0.20 -1.5 729,056 - EX31_RS24795 0.20 -0.0 729,056 - EX31_RS24795 0.20 +0.4 729,074 + EX31_RS24795 0.22 +0.1 729,074 + EX31_RS24795 0.22 +0.6 729,075 - EX31_RS24795 0.22 +0.7 729,076 + EX31_RS24795 0.22 -2.2 729,086 + EX31_RS24795 0.23 -0.2 729,086 + EX31_RS24795 0.23 +1.1 729,086 + EX31_RS24795 0.23 +0.2 729,086 + EX31_RS24795 0.23 -0.2 729,086 + EX31_RS24795 0.23 -1.8 729,086 + EX31_RS24795 0.23 +0.4 729,086 + EX31_RS24795 0.23 +0.6 729,086 + EX31_RS24795 0.23 +0.1 729,086 + EX31_RS24795 0.23 +1.3 729,087 - EX31_RS24795 0.24 +1.7 729,087 - EX31_RS24795 0.24 +0.5 729,087 - EX31_RS24795 0.24 -0.1 729,087 - EX31_RS24795 0.24 +0.2 729,087 - EX31_RS24795 0.24 +0.4 729,087 - EX31_RS24795 0.24 +0.4 729,087 - EX31_RS24795 0.24 +1.1 729,243 + EX31_RS24795 0.43 +0.7 729,243 + EX31_RS24795 0.43 +0.7 729,243 + EX31_RS24795 0.43 -0.2 729,244 - EX31_RS24795 0.43 +0.0 729,380 + EX31_RS24795 0.61 +1.1 729,381 - EX31_RS24795 0.61 +1.1 729,401 + EX31_RS24795 0.63 -0.5 729,402 - EX31_RS24795 0.63 +0.8 729,402 - EX31_RS24795 0.63 -0.5 729,427 + EX31_RS24795 0.67 +1.4 729,427 + EX31_RS24795 0.67 -0.3 729,428 - EX31_RS24795 0.67 -0.6 729,428 - EX31_RS24795 0.67 +0.1 729,435 + EX31_RS24795 0.68 +0.2 729,441 + EX31_RS24795 0.68 +0.6 729,442 - EX31_RS24795 0.69 -0.2 729,547 + EX31_RS24795 0.82 -0.2 729,548 - EX31_RS24795 0.82 -0.3 729,550 + EX31_RS24795 0.82 -0.5 729,550 + EX31_RS24795 0.82 +1.1 729,551 - EX31_RS24795 0.82 +0.9 729,576 - EX31_RS24795 0.86 -0.9 729,614 + +0.8 729,660 + +0.2 729,661 - +1.0 729,661 - -0.7 729,661 - +0.1 729,689 + -0.8 729,690 - +0.1
Or see this region's nucleotide sequence