Strain Fitness in Rahnella sp. WP5 around EX31_RS24790

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25690 and EX31_RS24790 are separated by 665 nucleotidesEX31_RS24790 and EX31_RS24795 are separated by 200 nucleotides EX31_RS25690: EX31_RS25690 - tyrosine-type recombinase/integrase, at 726,971 to 727,123 _RS25690 EX31_RS24790: EX31_RS24790 - cation transporter, at 727,789 to 728,700 _RS24790 EX31_RS24795: EX31_RS24795 - hypothetical protein, at 728,901 to 729,689 _RS24795 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2at 726.934 kb on - strandat 726.934 kb on - strandat 726.934 kb on - strandat 726.973 kb on - strandat 726.973 kb on - strandat 726.975 kb on - strandat 726.975 kb on - strandat 726.975 kb on - strandat 727.034 kb on - strand, within EX31_RS25690at 727.034 kb on - strand, within EX31_RS25690at 727.034 kb on - strand, within EX31_RS25690at 727.044 kb on - strand, within EX31_RS25690at 727.119 kb on + strandat 727.119 kb on + strandat 727.120 kb on - strandat 727.120 kb on - strandat 727.231 kb on - strandat 727.252 kb on - strandat 727.255 kb on + strandat 727.256 kb on - strandat 727.256 kb on - strandat 727.258 kb on - strandat 727.274 kb on - strandat 727.395 kb on + strandat 727.395 kb on + strandat 727.396 kb on - strandat 727.417 kb on + strandat 727.417 kb on + strandat 727.417 kb on + strandat 727.418 kb on - strandat 727.471 kb on + strandat 727.572 kb on + strandat 727.572 kb on + strandat 727.605 kb on + strandat 727.605 kb on + strandat 727.623 kb on + strandat 727.626 kb on + strandat 727.626 kb on + strandat 727.626 kb on + strandat 727.627 kb on - strandat 727.628 kb on + strandat 727.628 kb on + strandat 727.628 kb on + strandat 727.656 kb on + strandat 727.707 kb on + strandat 727.708 kb on - strandat 727.709 kb on + strandat 727.730 kb on - strandat 727.730 kb on - strandat 727.828 kb on + strandat 727.871 kb on + strandat 728.001 kb on + strand, within EX31_RS24790at 728.032 kb on + strand, within EX31_RS24790at 728.090 kb on - strand, within EX31_RS24790at 728.090 kb on - strand, within EX31_RS24790at 728.092 kb on - strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.106 kb on + strand, within EX31_RS24790at 728.107 kb on - strand, within EX31_RS24790at 728.107 kb on - strand, within EX31_RS24790at 728.195 kb on + strand, within EX31_RS24790at 728.196 kb on - strand, within EX31_RS24790at 728.201 kb on + strand, within EX31_RS24790at 728.201 kb on + strand, within EX31_RS24790at 728.308 kb on + strand, within EX31_RS24790at 728.340 kb on + strand, within EX31_RS24790at 728.598 kb on + strand, within EX31_RS24790at 728.631 kb on + strandat 728.631 kb on + strandat 728.631 kb on + strandat 728.632 kb on - strandat 728.632 kb on - strandat 728.652 kb on - strandat 728.710 kb on + strandat 728.789 kb on - strandat 728.807 kb on + strandat 728.827 kb on + strandat 728.830 kb on + strandat 728.879 kb on - strandat 728.879 kb on - strandat 728.897 kb on + strandat 728.898 kb on - strandat 728.999 kb on - strand, within EX31_RS24795at 728.999 kb on - strand, within EX31_RS24795at 729.053 kb on + strand, within EX31_RS24795at 729.053 kb on + strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.054 kb on - strand, within EX31_RS24795at 729.055 kb on + strand, within EX31_RS24795at 729.055 kb on + strand, within EX31_RS24795at 729.055 kb on + strand, within EX31_RS24795at 729.055 kb on + strand, within EX31_RS24795at 729.056 kb on - strand, within EX31_RS24795at 729.056 kb on - strand, within EX31_RS24795at 729.074 kb on + strand, within EX31_RS24795at 729.074 kb on + strand, within EX31_RS24795at 729.075 kb on - strand, within EX31_RS24795at 729.076 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.086 kb on + strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.087 kb on - strand, within EX31_RS24795at 729.243 kb on + strand, within EX31_RS24795at 729.243 kb on + strand, within EX31_RS24795at 729.243 kb on + strand, within EX31_RS24795at 729.244 kb on - strand, within EX31_RS24795at 729.380 kb on + strand, within EX31_RS24795at 729.381 kb on - strand, within EX31_RS24795at 729.401 kb on + strand, within EX31_RS24795at 729.402 kb on - strand, within EX31_RS24795at 729.402 kb on - strand, within EX31_RS24795at 729.427 kb on + strand, within EX31_RS24795at 729.427 kb on + strand, within EX31_RS24795at 729.428 kb on - strand, within EX31_RS24795at 729.428 kb on - strand, within EX31_RS24795at 729.435 kb on + strand, within EX31_RS24795at 729.441 kb on + strand, within EX31_RS24795at 729.442 kb on - strand, within EX31_RS24795at 729.547 kb on + strand, within EX31_RS24795at 729.548 kb on - strand, within EX31_RS24795at 729.550 kb on + strand, within EX31_RS24795at 729.550 kb on + strand, within EX31_RS24795at 729.551 kb on - strand, within EX31_RS24795at 729.576 kb on - strand, within EX31_RS24795at 729.614 kb on + strandat 729.660 kb on + strandat 729.661 kb on - strandat 729.661 kb on - strandat 729.661 kb on - strandat 729.689 kb on + strandat 729.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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726,934 - -0.5
726,934 - -1.2
726,934 - +0.9
726,973 - -0.2
726,973 - -0.2
726,975 - -0.8
726,975 - +0.3
726,975 - +0.0
727,034 - EX31_RS25690 0.41 +0.3
727,034 - EX31_RS25690 0.41 +0.6
727,034 - EX31_RS25690 0.41 -0.3
727,044 - EX31_RS25690 0.48 -1.3
727,119 + -0.3
727,119 + +1.1
727,120 - -1.0
727,120 - -0.3
727,231 - -0.0
727,252 - -1.2
727,255 + -0.7
727,256 - +0.6
727,256 - -0.6
727,258 - +0.1
727,274 - -0.1
727,395 + +1.5
727,395 + +1.5
727,396 - -0.1
727,417 + +0.2
727,417 + +1.2
727,417 + -0.2
727,418 - +0.7
727,471 + +0.7
727,572 + +1.4
727,572 + -0.3
727,605 + +0.2
727,605 + +0.2
727,623 + +1.3
727,626 + -0.3
727,626 + +0.8
727,626 + -1.0
727,627 - +0.2
727,628 + +0.9
727,628 + +0.3
727,628 + +0.2
727,656 + +0.7
727,707 + +0.1
727,708 - +0.8
727,709 + +0.4
727,730 - -0.7
727,730 - -0.9
727,828 + -0.7
727,871 + +0.1
728,001 + EX31_RS24790 0.23 -0.4
728,032 + EX31_RS24790 0.27 -0.5
728,090 - EX31_RS24790 0.33 -1.8
728,090 - EX31_RS24790 0.33 +0.1
728,092 - EX31_RS24790 0.33 -0.2
728,106 + EX31_RS24790 0.35 -0.4
728,106 + EX31_RS24790 0.35 -0.0
728,106 + EX31_RS24790 0.35 +0.3
728,106 + EX31_RS24790 0.35 -1.3
728,106 + EX31_RS24790 0.35 -1.0
728,106 + EX31_RS24790 0.35 -0.5
728,106 + EX31_RS24790 0.35 -0.5
728,107 - EX31_RS24790 0.35 +1.1
728,107 - EX31_RS24790 0.35 -1.7
728,195 + EX31_RS24790 0.45 -0.3
728,196 - EX31_RS24790 0.45 -0.1
728,201 + EX31_RS24790 0.45 +0.4
728,201 + EX31_RS24790 0.45 -0.4
728,308 + EX31_RS24790 0.57 -0.3
728,340 + EX31_RS24790 0.60 -0.3
728,598 + EX31_RS24790 0.89 +0.4
728,631 + +0.2
728,631 + +0.1
728,631 + -0.1
728,632 - -0.5
728,632 - -0.8
728,652 - -0.0
728,710 + +0.5
728,789 - +0.3
728,807 + -0.7
728,827 + -0.5
728,830 + +0.1
728,879 - +0.4
728,879 - +0.2
728,897 + +1.2
728,898 - -0.5
728,999 - EX31_RS24795 0.12 -2.5
728,999 - EX31_RS24795 0.12 +0.7
729,053 + EX31_RS24795 0.19 +0.2
729,053 + EX31_RS24795 0.19 +0.9
729,054 - EX31_RS24795 0.19 +0.4
729,054 - EX31_RS24795 0.19 -0.5
729,054 - EX31_RS24795 0.19 +0.3
729,054 - EX31_RS24795 0.19 +1.8
729,054 - EX31_RS24795 0.19 +0.4
729,054 - EX31_RS24795 0.19 +1.3
729,055 + EX31_RS24795 0.20 -1.0
729,055 + EX31_RS24795 0.20 -0.2
729,055 + EX31_RS24795 0.20 +0.2
729,055 + EX31_RS24795 0.20 -1.5
729,056 - EX31_RS24795 0.20 -0.0
729,056 - EX31_RS24795 0.20 +0.4
729,074 + EX31_RS24795 0.22 +0.1
729,074 + EX31_RS24795 0.22 +0.6
729,075 - EX31_RS24795 0.22 +0.7
729,076 + EX31_RS24795 0.22 -2.2
729,086 + EX31_RS24795 0.23 -0.2
729,086 + EX31_RS24795 0.23 +1.1
729,086 + EX31_RS24795 0.23 +0.2
729,086 + EX31_RS24795 0.23 -0.2
729,086 + EX31_RS24795 0.23 -1.8
729,086 + EX31_RS24795 0.23 +0.4
729,086 + EX31_RS24795 0.23 +0.6
729,086 + EX31_RS24795 0.23 +0.1
729,086 + EX31_RS24795 0.23 +1.3
729,087 - EX31_RS24795 0.24 +1.7
729,087 - EX31_RS24795 0.24 +0.5
729,087 - EX31_RS24795 0.24 -0.1
729,087 - EX31_RS24795 0.24 +0.2
729,087 - EX31_RS24795 0.24 +0.4
729,087 - EX31_RS24795 0.24 +0.4
729,087 - EX31_RS24795 0.24 +1.1
729,243 + EX31_RS24795 0.43 +0.7
729,243 + EX31_RS24795 0.43 +0.7
729,243 + EX31_RS24795 0.43 -0.2
729,244 - EX31_RS24795 0.43 +0.0
729,380 + EX31_RS24795 0.61 +1.1
729,381 - EX31_RS24795 0.61 +1.1
729,401 + EX31_RS24795 0.63 -0.5
729,402 - EX31_RS24795 0.63 +0.8
729,402 - EX31_RS24795 0.63 -0.5
729,427 + EX31_RS24795 0.67 +1.4
729,427 + EX31_RS24795 0.67 -0.3
729,428 - EX31_RS24795 0.67 -0.6
729,428 - EX31_RS24795 0.67 +0.1
729,435 + EX31_RS24795 0.68 +0.2
729,441 + EX31_RS24795 0.68 +0.6
729,442 - EX31_RS24795 0.69 -0.2
729,547 + EX31_RS24795 0.82 -0.2
729,548 - EX31_RS24795 0.82 -0.3
729,550 + EX31_RS24795 0.82 -0.5
729,550 + EX31_RS24795 0.82 +1.1
729,551 - EX31_RS24795 0.82 +0.9
729,576 - EX31_RS24795 0.86 -0.9
729,614 + +0.8
729,660 + +0.2
729,661 - +1.0
729,661 - -0.7
729,661 - +0.1
729,689 + -0.8
729,690 - +0.1

Or see this region's nucleotide sequence