Strain Fitness in Rahnella sp. WP5 around EX31_RS23760

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23745 and EX31_RS23750 are separated by 2 nucleotidesEX31_RS23750 and EX31_RS23755 overlap by 4 nucleotidesEX31_RS23755 and EX31_RS23760 are separated by 1 nucleotidesEX31_RS23760 and EX31_RS23765 are separated by 118 nucleotides EX31_RS23745: EX31_RS23745 - molybdenum cofactor biosynthesis protein B, at 514,971 to 515,483 _RS23745 EX31_RS23750: EX31_RS23750 - cyclic pyranopterin monophosphate synthase MoaC, at 515,486 to 515,977 _RS23750 EX31_RS23755: EX31_RS23755 - molybdopterin synthase sulfur carrier subunit, at 515,974 to 516,219 _RS23755 EX31_RS23760: EX31_RS23760 - molybdopterin synthase catalytic subunit MoaE, at 516,221 to 516,673 _RS23760 EX31_RS23765: EX31_RS23765 - Bax inhibitor-1/YccA family protein, at 516,792 to 517,502 _RS23765 Position (kb) 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1at 515.228 kb on + strand, within EX31_RS23745at 515.421 kb on - strand, within EX31_RS23745at 515.421 kb on - strand, within EX31_RS23745at 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.481 kb on + strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.482 kb on - strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.485 kb on + strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.486 kb on - strandat 515.503 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.507 kb on - strandat 515.626 kb on + strand, within EX31_RS23750at 515.635 kb on + strand, within EX31_RS23750at 515.653 kb on + strand, within EX31_RS23750at 515.653 kb on + strand, within EX31_RS23750at 515.654 kb on - strand, within EX31_RS23750at 515.654 kb on - strand, within EX31_RS23750at 515.861 kb on - strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.864 kb on + strand, within EX31_RS23750at 515.865 kb on - strand, within EX31_RS23750at 515.865 kb on - strand, within EX31_RS23750at 515.865 kb on - strand, within EX31_RS23750at 515.865 kb on - strand, within EX31_RS23750at 515.865 kb on - strand, within EX31_RS23750at 515.893 kb on + strand, within EX31_RS23750at 515.893 kb on + strand, within EX31_RS23750at 515.893 kb on + strand, within EX31_RS23750at 515.951 kb on - strandat 515.963 kb on - strandat 515.963 kb on - strandat 515.973 kb on + strandat 515.973 kb on + strandat 515.974 kb on - strandat 516.002 kb on + strand, within EX31_RS23755at 516.002 kb on + strand, within EX31_RS23755at 516.275 kb on + strand, within EX31_RS23760at 516.275 kb on + strand, within EX31_RS23760at 516.276 kb on - strand, within EX31_RS23760at 516.276 kb on - strand, within EX31_RS23760at 516.276 kb on - strand, within EX31_RS23760at 516.337 kb on + strand, within EX31_RS23760at 516.343 kb on + strand, within EX31_RS23760at 516.344 kb on - strand, within EX31_RS23760at 516.433 kb on + strand, within EX31_RS23760at 516.649 kb on + strandat 516.650 kb on - strandat 516.671 kb on + strandat 516.672 kb on - strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.716 kb on + strandat 516.717 kb on - strandat 516.732 kb on + strandat 516.785 kb on - strandat 516.855 kb on + strandat 516.855 kb on + strandat 516.855 kb on + strandat 516.855 kb on + strandat 516.855 kb on + strandat 516.856 kb on - strandat 516.870 kb on + strand, within EX31_RS23765at 516.918 kb on + strand, within EX31_RS23765at 516.968 kb on + strand, within EX31_RS23765at 517.064 kb on + strand, within EX31_RS23765at 517.064 kb on + strand, within EX31_RS23765at 517.065 kb on - strand, within EX31_RS23765at 517.071 kb on + strand, within EX31_RS23765at 517.072 kb on - strand, within EX31_RS23765at 517.116 kb on + strand, within EX31_RS23765at 517.182 kb on + strand, within EX31_RS23765at 517.182 kb on + strand, within EX31_RS23765at 517.188 kb on + strand, within EX31_RS23765at 517.312 kb on - strand, within EX31_RS23765at 517.347 kb on + strand, within EX31_RS23765at 517.347 kb on + strand, within EX31_RS23765at 517.347 kb on + strand, within EX31_RS23765at 517.347 kb on + strand, within EX31_RS23765at 517.412 kb on + strand, within EX31_RS23765at 517.416 kb on + strand, within EX31_RS23765at 517.416 kb on + strand, within EX31_RS23765at 517.417 kb on - strand, within EX31_RS23765at 517.443 kb on + strandat 517.443 kb on + strandat 517.443 kb on + strandat 517.556 kb on - strandat 517.569 kb on - strandat 517.578 kb on - strandat 517.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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515,228 + EX31_RS23745 0.50 +0.1
515,421 - EX31_RS23745 0.88 +0.1
515,421 - EX31_RS23745 0.88 -0.7
515,481 + -0.1
515,481 + -0.7
515,481 + +0.3
515,481 + +0.4
515,481 + -0.0
515,481 + -0.7
515,481 + +0.2
515,481 + -0.2
515,481 + +0.8
515,481 + +0.5
515,481 + +0.6
515,481 + +0.3
515,481 + -0.3
515,481 + +0.5
515,481 + +0.2
515,481 + +0.3
515,482 - +0.2
515,482 - +0.6
515,482 - -0.0
515,482 - +0.7
515,482 - +0.3
515,482 - -0.5
515,482 - -0.7
515,485 + -0.0
515,485 + +0.1
515,485 + +0.1
515,485 + +0.1
515,485 + +0.2
515,485 + -0.4
515,485 + +0.0
515,485 + +0.2
515,486 - +0.2
515,486 - -1.3
515,486 - +0.3
515,486 - -0.5
515,486 - +0.1
515,486 - -0.2
515,486 - +0.0
515,503 + +0.2
515,506 + -0.8
515,506 + +0.5
515,507 - +0.4
515,626 + EX31_RS23750 0.28 +0.7
515,635 + EX31_RS23750 0.30 +0.0
515,653 + EX31_RS23750 0.34 +1.0
515,653 + EX31_RS23750 0.34 -1.4
515,654 - EX31_RS23750 0.34 +1.1
515,654 - EX31_RS23750 0.34 -0.9
515,861 - EX31_RS23750 0.76 +0.2
515,864 + EX31_RS23750 0.77 +0.0
515,864 + EX31_RS23750 0.77 -2.9
515,864 + EX31_RS23750 0.77 +0.7
515,864 + EX31_RS23750 0.77 +0.0
515,864 + EX31_RS23750 0.77 +0.0
515,864 + EX31_RS23750 0.77 +0.3
515,864 + EX31_RS23750 0.77 -0.1
515,864 + EX31_RS23750 0.77 +0.8
515,864 + EX31_RS23750 0.77 -0.7
515,864 + EX31_RS23750 0.77 -0.2
515,864 + EX31_RS23750 0.77 -0.0
515,864 + EX31_RS23750 0.77 +0.9
515,864 + EX31_RS23750 0.77 -0.4
515,865 - EX31_RS23750 0.77 +0.1
515,865 - EX31_RS23750 0.77 -0.5
515,865 - EX31_RS23750 0.77 -0.0
515,865 - EX31_RS23750 0.77 -0.1
515,865 - EX31_RS23750 0.77 -1.2
515,893 + EX31_RS23750 0.83 +1.0
515,893 + EX31_RS23750 0.83 -2.1
515,893 + EX31_RS23750 0.83 +0.3
515,951 - +1.2
515,963 - -0.5
515,963 - -0.6
515,973 + -1.0
515,973 + +0.1
515,974 - +1.4
516,002 + EX31_RS23755 0.11 -0.3
516,002 + EX31_RS23755 0.11 -0.3
516,275 + EX31_RS23760 0.12 -0.1
516,275 + EX31_RS23760 0.12 -0.5
516,276 - EX31_RS23760 0.12 -0.5
516,276 - EX31_RS23760 0.12 +0.7
516,276 - EX31_RS23760 0.12 -0.3
516,337 + EX31_RS23760 0.26 -0.8
516,343 + EX31_RS23760 0.27 -0.4
516,344 - EX31_RS23760 0.27 -0.9
516,433 + EX31_RS23760 0.47 +0.6
516,649 + +0.1
516,650 - -0.1
516,671 + +0.3
516,672 - +1.0
516,716 + -0.4
516,716 + +0.5
516,716 + +1.7
516,717 - -0.4
516,732 + +0.6
516,785 - +0.1
516,855 + -1.1
516,855 + +0.7
516,855 + +1.3
516,855 + -0.2
516,855 + -0.1
516,856 - +1.6
516,870 + EX31_RS23765 0.11 +0.1
516,918 + EX31_RS23765 0.18 -0.6
516,968 + EX31_RS23765 0.25 +0.2
517,064 + EX31_RS23765 0.38 +0.2
517,064 + EX31_RS23765 0.38 -0.5
517,065 - EX31_RS23765 0.38 +0.3
517,071 + EX31_RS23765 0.39 -0.0
517,072 - EX31_RS23765 0.39 -0.7
517,116 + EX31_RS23765 0.46 +0.2
517,182 + EX31_RS23765 0.55 +0.1
517,182 + EX31_RS23765 0.55 -0.1
517,188 + EX31_RS23765 0.56 -0.6
517,312 - EX31_RS23765 0.73 -0.2
517,347 + EX31_RS23765 0.78 +0.2
517,347 + EX31_RS23765 0.78 +0.1
517,347 + EX31_RS23765 0.78 -0.0
517,347 + EX31_RS23765 0.78 -1.2
517,412 + EX31_RS23765 0.87 -0.3
517,416 + EX31_RS23765 0.88 -0.1
517,416 + EX31_RS23765 0.88 +0.5
517,417 - EX31_RS23765 0.88 -0.9
517,443 + -0.5
517,443 + +0.4
517,443 + -0.0
517,556 - -0.7
517,569 - +0.7
517,578 - -0.6
517,615 + +0.8

Or see this region's nucleotide sequence