Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23700 and EX31_RS23705 overlap by 17 nucleotides EX31_RS23705 and EX31_RS23710 are separated by 147 nucleotides EX31_RS23710 and EX31_RS23715 are separated by 4 nucleotides
EX31_RS23700: EX31_RS23700 - 8-amino-7-oxononanoate synthase, at 504,938 to 506,089
_RS23700
EX31_RS23705: EX31_RS23705 - malonyl-ACP O-methyltransferase BioC, at 506,073 to 506,864
_RS23705
EX31_RS23710: EX31_RS23710 - ATP-dependent dethiobiotin synthetase BioD, at 507,012 to 507,692
_RS23710
EX31_RS23715: EX31_RS23715 - ATP-binding cassette domain-containing protein, at 507,697 to 508,407
_RS23715
Position (kb) 506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.082 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.143 kb on - strand, within EX31_RS23700 at 505.143 kb on - strand, within EX31_RS23700 at 505.253 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.510 kb on + strand, within EX31_RS23700 at 505.510 kb on + strand, within EX31_RS23700 at 505.531 kb on + strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.825 kb on + strand, within EX31_RS23700 at 506.014 kb on + strand at 506.014 kb on + strand at 506.014 kb on + strand at 506.015 kb on - strand at 506.015 kb on - strand at 506.015 kb on - strand at 506.015 kb on - strand at 506.095 kb on - strand at 506.205 kb on + strand, within EX31_RS23705 at 506.206 kb on - strand, within EX31_RS23705 at 506.323 kb on + strand, within EX31_RS23705 at 506.358 kb on + strand, within EX31_RS23705 at 506.358 kb on + strand, within EX31_RS23705 at 506.358 kb on + strand, within EX31_RS23705 at 506.358 kb on + strand, within EX31_RS23705 at 506.358 kb on + strand, within EX31_RS23705 at 506.359 kb on - strand, within EX31_RS23705 at 506.359 kb on - strand, within EX31_RS23705 at 506.359 kb on - strand, within EX31_RS23705 at 506.359 kb on - strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.782 kb on - strand, within EX31_RS23705 at 506.826 kb on + strand at 506.827 kb on - strand at 506.863 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.938 kb on - strand at 506.938 kb on - strand at 506.941 kb on - strand at 506.998 kb on + strand at 507.006 kb on + strand at 507.007 kb on - strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.025 kb on - strand at 507.025 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.056 kb on + strand at 507.057 kb on - strand at 507.057 kb on - strand at 507.057 kb on - strand at 507.120 kb on + strand, within EX31_RS23710 at 507.187 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.263 kb on + strand, within EX31_RS23710 at 507.263 kb on + strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.308 kb on - strand, within EX31_RS23710 at 507.319 kb on + strand, within EX31_RS23710 at 507.320 kb on - strand, within EX31_RS23710 at 507.320 kb on - strand, within EX31_RS23710 at 507.375 kb on + strand, within EX31_RS23710 at 507.375 kb on + strand, within EX31_RS23710 at 507.376 kb on - strand, within EX31_RS23710 at 507.376 kb on - strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.532 kb on + strand, within EX31_RS23710 at 507.537 kb on - strand, within EX31_RS23710 at 507.537 kb on - strand, within EX31_RS23710 at 507.544 kb on + strand, within EX31_RS23710 at 507.545 kb on - strand, within EX31_RS23710 at 507.545 kb on - strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.582 kb on - strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.594 kb on - strand, within EX31_RS23710 at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.674 kb on + strand at 507.675 kb on - strand at 507.710 kb on + strand at 507.711 kb on - strand at 507.721 kb on + strand at 507.721 kb on + strand at 507.722 kb on - strand at 507.727 kb on - strand at 507.819 kb on + strand, within EX31_RS23715 at 507.820 kb on - strand, within EX31_RS23715 at 507.820 kb on - strand, within EX31_RS23715
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 505,082 + EX31_RS23700 0.12 -0.7 505,142 + EX31_RS23700 0.18 +1.1 505,142 + EX31_RS23700 0.18 +0.7 505,142 + EX31_RS23700 0.18 +0.0 505,142 + EX31_RS23700 0.18 +0.2 505,142 + EX31_RS23700 0.18 -0.1 505,142 + EX31_RS23700 0.18 +0.0 505,142 + EX31_RS23700 0.18 +0.3 505,143 - EX31_RS23700 0.18 -0.5 505,143 - EX31_RS23700 0.18 +0.1 505,253 - EX31_RS23700 0.27 -1.7 505,468 - EX31_RS23700 0.46 +0.3 505,468 - EX31_RS23700 0.46 -0.7 505,468 - EX31_RS23700 0.46 +0.7 505,468 - EX31_RS23700 0.46 -0.7 505,510 + EX31_RS23700 0.50 +0.5 505,510 + EX31_RS23700 0.50 +0.1 505,531 + EX31_RS23700 0.51 -0.1 505,728 - EX31_RS23700 0.69 +0.1 505,728 - EX31_RS23700 0.69 -0.9 505,728 - EX31_RS23700 0.69 +1.2 505,728 - EX31_RS23700 0.69 -1.5 505,728 - EX31_RS23700 0.69 +1.1 505,825 + EX31_RS23700 0.77 -0.4 506,014 + -1.4 506,014 + +0.2 506,014 + +0.1 506,015 - -0.6 506,015 - +0.8 506,015 - -1.4 506,015 - -0.3 506,095 - -0.9 506,205 + EX31_RS23705 0.17 +1.4 506,206 - EX31_RS23705 0.17 -0.4 506,323 + EX31_RS23705 0.32 -1.1 506,358 + EX31_RS23705 0.36 -1.5 506,358 + EX31_RS23705 0.36 -0.4 506,358 + EX31_RS23705 0.36 -0.2 506,358 + EX31_RS23705 0.36 -0.1 506,358 + EX31_RS23705 0.36 -0.5 506,359 - EX31_RS23705 0.36 -0.4 506,359 - EX31_RS23705 0.36 -0.2 506,359 - EX31_RS23705 0.36 -2.0 506,359 - EX31_RS23705 0.36 +0.7 506,781 + EX31_RS23705 0.89 -0.1 506,781 + EX31_RS23705 0.89 +0.6 506,781 + EX31_RS23705 0.89 -0.6 506,781 + EX31_RS23705 0.89 -0.2 506,782 - EX31_RS23705 0.90 -1.7 506,826 + +0.2 506,827 - +0.8 506,863 - +1.0 506,867 - -0.0 506,867 - -0.3 506,867 - +0.2 506,867 - -0.5 506,867 - -0.1 506,867 - +1.5 506,938 - -0.4 506,938 - -0.5 506,941 - -0.4 506,998 + +0.7 507,006 + +1.7 507,007 - +0.7 507,024 + +0.0 507,024 + -0.2 507,024 + +0.2 507,024 + -1.6 507,025 - +0.1 507,025 - +0.2 507,030 - -0.6 507,030 - +0.4 507,056 + -0.1 507,057 - -1.5 507,057 - +0.8 507,057 - +0.4 507,120 + EX31_RS23710 0.16 +0.5 507,187 + EX31_RS23710 0.26 +0.0 507,195 + EX31_RS23710 0.27 -0.2 507,195 + EX31_RS23710 0.27 -0.5 507,195 + EX31_RS23710 0.27 +1.2 507,196 - EX31_RS23710 0.27 +0.2 507,196 - EX31_RS23710 0.27 +1.1 507,196 - EX31_RS23710 0.27 -0.0 507,263 + EX31_RS23710 0.37 +0.5 507,263 + EX31_RS23710 0.37 -0.2 507,264 - EX31_RS23710 0.37 -0.7 507,264 - EX31_RS23710 0.37 +0.2 507,264 - EX31_RS23710 0.37 -0.0 507,264 - EX31_RS23710 0.37 -0.4 507,264 - EX31_RS23710 0.37 -0.1 507,308 - EX31_RS23710 0.43 +0.7 507,319 + EX31_RS23710 0.45 +1.0 507,320 - EX31_RS23710 0.45 -0.4 507,320 - EX31_RS23710 0.45 -0.3 507,375 + EX31_RS23710 0.53 +0.5 507,375 + EX31_RS23710 0.53 -1.4 507,376 - EX31_RS23710 0.53 -0.7 507,376 - EX31_RS23710 0.53 +1.2 507,396 + EX31_RS23710 0.56 -0.3 507,396 + EX31_RS23710 0.56 -0.8 507,396 + EX31_RS23710 0.56 +0.2 507,396 + EX31_RS23710 0.56 +0.1 507,396 + EX31_RS23710 0.56 -0.2 507,396 + EX31_RS23710 0.56 +1.0 507,396 + EX31_RS23710 0.56 +0.4 507,396 + EX31_RS23710 0.56 -0.3 507,396 + EX31_RS23710 0.56 -0.2 507,397 - EX31_RS23710 0.57 -1.8 507,397 - EX31_RS23710 0.57 -0.5 507,397 - EX31_RS23710 0.57 +1.8 507,398 + EX31_RS23710 0.57 -1.7 507,398 + EX31_RS23710 0.57 -0.2 507,398 + EX31_RS23710 0.57 +0.6 507,398 + EX31_RS23710 0.57 +1.2 507,398 + EX31_RS23710 0.57 +0.0 507,398 + EX31_RS23710 0.57 -0.3 507,398 + EX31_RS23710 0.57 -0.4 507,398 + EX31_RS23710 0.57 -0.1 507,399 - EX31_RS23710 0.57 -0.9 507,399 - EX31_RS23710 0.57 -0.1 507,399 - EX31_RS23710 0.57 +0.0 507,532 + EX31_RS23710 0.76 +0.1 507,537 - EX31_RS23710 0.77 +0.1 507,537 - EX31_RS23710 0.77 +0.2 507,544 + EX31_RS23710 0.78 -0.9 507,545 - EX31_RS23710 0.78 -1.0 507,545 - EX31_RS23710 0.78 -1.1 507,573 + EX31_RS23710 0.82 -0.8 507,573 + EX31_RS23710 0.82 -0.2 507,573 + EX31_RS23710 0.82 -0.1 507,573 + EX31_RS23710 0.82 -0.6 507,573 + EX31_RS23710 0.82 -0.5 507,573 + EX31_RS23710 0.82 +0.3 507,573 + EX31_RS23710 0.82 -0.7 507,573 + EX31_RS23710 0.82 +1.0 507,573 + EX31_RS23710 0.82 +0.1 507,573 + EX31_RS23710 0.82 +0.1 507,574 - EX31_RS23710 0.83 +1.7 507,574 - EX31_RS23710 0.83 -0.3 507,574 - EX31_RS23710 0.83 +0.8 507,574 - EX31_RS23710 0.83 -1.3 507,574 - EX31_RS23710 0.83 -0.1 507,574 - EX31_RS23710 0.83 -0.3 507,574 - EX31_RS23710 0.83 -1.4 507,574 - EX31_RS23710 0.83 +0.1 507,574 - EX31_RS23710 0.83 +0.2 507,574 - EX31_RS23710 0.83 -0.3 507,574 - EX31_RS23710 0.83 -0.6 507,574 - EX31_RS23710 0.83 -0.1 507,574 - EX31_RS23710 0.83 +0.1 507,574 - EX31_RS23710 0.83 -0.2 507,574 - EX31_RS23710 0.83 -1.5 507,574 - EX31_RS23710 0.83 +0.0 507,574 - EX31_RS23710 0.83 +0.0 507,574 - EX31_RS23710 0.83 +0.6 507,574 - EX31_RS23710 0.83 -0.1 507,574 - EX31_RS23710 0.83 -0.8 507,574 - EX31_RS23710 0.83 -1.2 507,582 - EX31_RS23710 0.84 +0.1 507,593 + EX31_RS23710 0.85 -0.5 507,593 + EX31_RS23710 0.85 -0.5 507,593 + EX31_RS23710 0.85 +0.6 507,594 - EX31_RS23710 0.85 +1.2 507,663 + +1.0 507,663 + -0.3 507,663 + +0.6 507,663 + +0.0 507,663 + -0.8 507,663 + +0.1 507,663 + +0.4 507,664 - +0.0 507,664 - +0.7 507,664 - +0.3 507,664 - +1.3 507,664 - -0.5 507,664 - +0.1 507,674 + -0.4 507,675 - -1.5 507,710 + +0.1 507,711 - -0.0 507,721 + -0.1 507,721 + +0.4 507,722 - +1.1 507,727 - +1.0 507,819 + EX31_RS23715 0.17 +1.4 507,820 - EX31_RS23715 0.17 -0.6 507,820 - EX31_RS23715 0.17 +0.0
Or see this region's nucleotide sequence