Strain Fitness in Rahnella sp. WP5 around EX31_RS23530

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23525 and EX31_RS23530 are separated by 58 nucleotidesEX31_RS23530 and EX31_RS23535 are separated by 65 nucleotides EX31_RS23525: EX31_RS23525 - quinolinate synthase NadA, at 471,373 to 472,437 _RS23525 EX31_RS23530: EX31_RS23530 - nicotinamide riboside transporter PnuC, at 472,496 to 473,218 _RS23530 EX31_RS23535: EX31_RS23535 - CDF family zinc transporter ZitB, at 473,284 to 474,237 _RS23535 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 471.514 kb on + strand, within EX31_RS23525at 471.515 kb on - strand, within EX31_RS23525at 471.517 kb on + strand, within EX31_RS23525at 471.562 kb on - strand, within EX31_RS23525at 471.562 kb on - strand, within EX31_RS23525at 471.787 kb on + strand, within EX31_RS23525at 471.787 kb on + strand, within EX31_RS23525at 471.787 kb on + strand, within EX31_RS23525at 471.792 kb on + strand, within EX31_RS23525at 471.792 kb on + strand, within EX31_RS23525at 471.793 kb on - strand, within EX31_RS23525at 471.795 kb on + strand, within EX31_RS23525at 471.795 kb on + strand, within EX31_RS23525at 471.795 kb on + strand, within EX31_RS23525at 471.795 kb on + strand, within EX31_RS23525at 471.810 kb on - strand, within EX31_RS23525at 472.024 kb on + strand, within EX31_RS23525at 472.110 kb on + strand, within EX31_RS23525at 472.110 kb on + strand, within EX31_RS23525at 472.407 kb on + strandat 472.408 kb on - strandat 472.408 kb on - strandat 472.408 kb on - strandat 472.413 kb on - strandat 472.435 kb on + strandat 472.436 kb on - strandat 472.455 kb on + strandat 472.456 kb on - strandat 472.475 kb on + strandat 472.475 kb on + strandat 472.475 kb on + strandat 472.519 kb on + strandat 472.531 kb on + strandat 472.531 kb on + strandat 472.531 kb on + strandat 472.531 kb on + strandat 472.531 kb on + strandat 472.532 kb on - strandat 472.533 kb on + strandat 472.533 kb on + strandat 472.554 kb on - strandat 472.578 kb on + strand, within EX31_RS23530at 472.610 kb on + strand, within EX31_RS23530at 472.611 kb on - strand, within EX31_RS23530at 472.611 kb on - strand, within EX31_RS23530at 472.697 kb on + strand, within EX31_RS23530at 472.739 kb on - strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.742 kb on + strand, within EX31_RS23530at 472.751 kb on + strand, within EX31_RS23530at 472.751 kb on + strand, within EX31_RS23530at 472.816 kb on + strand, within EX31_RS23530at 472.836 kb on + strand, within EX31_RS23530at 473.096 kb on + strand, within EX31_RS23530at 473.096 kb on + strand, within EX31_RS23530at 473.109 kb on - strand, within EX31_RS23530at 473.127 kb on - strand, within EX31_RS23530at 473.307 kb on + strandat 473.385 kb on - strand, within EX31_RS23535at 473.385 kb on - strand, within EX31_RS23535at 473.396 kb on - strand, within EX31_RS23535at 473.428 kb on + strand, within EX31_RS23535at 473.587 kb on - strand, within EX31_RS23535at 473.690 kb on - strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.802 kb on + strand, within EX31_RS23535at 473.802 kb on + strand, within EX31_RS23535at 473.803 kb on - strand, within EX31_RS23535at 473.850 kb on + strand, within EX31_RS23535at 474.009 kb on - strand, within EX31_RS23535at 474.009 kb on - strand, within EX31_RS23535at 474.036 kb on + strand, within EX31_RS23535at 474.036 kb on + strand, within EX31_RS23535at 474.037 kb on - strand, within EX31_RS23535at 474.042 kb on + strand, within EX31_RS23535at 474.052 kb on + strand, within EX31_RS23535at 474.174 kb on + strandat 474.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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471,514 + EX31_RS23525 0.13 -0.7
471,515 - EX31_RS23525 0.13 -0.4
471,517 + EX31_RS23525 0.14 -0.1
471,562 - EX31_RS23525 0.18 -1.0
471,562 - EX31_RS23525 0.18 +0.3
471,787 + EX31_RS23525 0.39 -0.2
471,787 + EX31_RS23525 0.39 -0.3
471,787 + EX31_RS23525 0.39 -1.2
471,792 + EX31_RS23525 0.39 -0.0
471,792 + EX31_RS23525 0.39 -0.2
471,793 - EX31_RS23525 0.39 +2.4
471,795 + EX31_RS23525 0.40 +1.0
471,795 + EX31_RS23525 0.40 -0.4
471,795 + EX31_RS23525 0.40 +0.1
471,795 + EX31_RS23525 0.40 +0.4
471,810 - EX31_RS23525 0.41 -0.3
472,024 + EX31_RS23525 0.61 +0.1
472,110 + EX31_RS23525 0.69 -0.1
472,110 + EX31_RS23525 0.69 +0.1
472,407 + +0.4
472,408 - +1.4
472,408 - +0.9
472,408 - +0.4
472,413 - -0.2
472,435 + -0.0
472,436 - -0.6
472,455 + -0.6
472,456 - -0.1
472,475 + -0.3
472,475 + -0.7
472,475 + -1.1
472,519 + +0.0
472,531 + -0.1
472,531 + -1.4
472,531 + -0.3
472,531 + +0.6
472,531 + +0.7
472,532 - +0.4
472,533 + +0.3
472,533 + -2.0
472,554 - -0.0
472,578 + EX31_RS23530 0.11 -1.1
472,610 + EX31_RS23530 0.16 +1.5
472,611 - EX31_RS23530 0.16 -0.4
472,611 - EX31_RS23530 0.16 -0.2
472,697 + EX31_RS23530 0.28 -0.5
472,739 - EX31_RS23530 0.34 +0.4
472,742 + EX31_RS23530 0.34 -0.9
472,742 + EX31_RS23530 0.34 +0.0
472,742 + EX31_RS23530 0.34 +0.1
472,742 + EX31_RS23530 0.34 +1.0
472,742 + EX31_RS23530 0.34 -0.5
472,742 + EX31_RS23530 0.34 -0.4
472,742 + EX31_RS23530 0.34 -0.5
472,751 + EX31_RS23530 0.35 +0.3
472,751 + EX31_RS23530 0.35 +0.0
472,816 + EX31_RS23530 0.44 +0.2
472,836 + EX31_RS23530 0.47 -2.1
473,096 + EX31_RS23530 0.83 -0.6
473,096 + EX31_RS23530 0.83 -0.7
473,109 - EX31_RS23530 0.85 -2.1
473,127 - EX31_RS23530 0.87 +0.2
473,307 + -1.5
473,385 - EX31_RS23535 0.11 -0.0
473,385 - EX31_RS23535 0.11 +0.3
473,396 - EX31_RS23535 0.12 +0.5
473,428 + EX31_RS23535 0.15 +0.2
473,587 - EX31_RS23535 0.32 +0.2
473,690 - EX31_RS23535 0.43 +0.3
473,720 + EX31_RS23535 0.46 +0.2
473,720 + EX31_RS23535 0.46 -0.6
473,720 + EX31_RS23535 0.46 +0.1
473,720 + EX31_RS23535 0.46 -0.2
473,720 + EX31_RS23535 0.46 -0.1
473,720 + EX31_RS23535 0.46 -0.5
473,721 - EX31_RS23535 0.46 +2.0
473,721 - EX31_RS23535 0.46 -0.8
473,721 - EX31_RS23535 0.46 -0.8
473,721 - EX31_RS23535 0.46 +0.2
473,721 - EX31_RS23535 0.46 +0.5
473,721 - EX31_RS23535 0.46 +0.1
473,721 - EX31_RS23535 0.46 +0.5
473,721 - EX31_RS23535 0.46 -0.6
473,721 - EX31_RS23535 0.46 +0.3
473,721 - EX31_RS23535 0.46 +0.5
473,721 - EX31_RS23535 0.46 +0.0
473,721 - EX31_RS23535 0.46 +0.7
473,802 + EX31_RS23535 0.54 +0.6
473,802 + EX31_RS23535 0.54 -0.5
473,803 - EX31_RS23535 0.54 +0.2
473,850 + EX31_RS23535 0.59 -0.1
474,009 - EX31_RS23535 0.76 +0.2
474,009 - EX31_RS23535 0.76 +1.9
474,036 + EX31_RS23535 0.79 -0.1
474,036 + EX31_RS23535 0.79 -0.6
474,037 - EX31_RS23535 0.79 +0.3
474,042 + EX31_RS23535 0.79 -1.0
474,052 + EX31_RS23535 0.81 +0.4
474,174 + -0.5
474,175 - -0.1

Or see this region's nucleotide sequence