Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22545 and EX31_RS22550 are separated by 129 nucleotides EX31_RS22550 and EX31_RS22560 are separated by 237 nucleotides
EX31_RS22545: EX31_RS22545 - inosine/guanosine kinase, at 263,467 to 264,786
_RS22545
EX31_RS22550: EX31_RS22550 - Kef family K(+) transporter, at 264,916 to 266,607
_RS22550
EX31_RS22560: EX31_RS22560 - MFS transporter, at 266,845 to 268,056
_RS22560
Position (kb) 264
265
266
267 Strain fitness (log2 ratio) -2
-1
0
1 at 263.928 kb on - strand, within EX31_RS22545 at 263.928 kb on - strand, within EX31_RS22545 at 264.032 kb on + strand, within EX31_RS22545 at 264.032 kb on + strand, within EX31_RS22545 at 264.053 kb on + strand, within EX31_RS22545 at 264.054 kb on - strand, within EX31_RS22545 at 264.064 kb on + strand, within EX31_RS22545 at 264.136 kb on + strand, within EX31_RS22545 at 264.136 kb on + strand, within EX31_RS22545 at 264.172 kb on + strand, within EX31_RS22545 at 264.172 kb on + strand, within EX31_RS22545 at 264.172 kb on + strand, within EX31_RS22545 at 264.173 kb on - strand, within EX31_RS22545 at 264.331 kb on - strand, within EX31_RS22545 at 264.354 kb on + strand, within EX31_RS22545 at 264.364 kb on + strand, within EX31_RS22545 at 264.364 kb on + strand, within EX31_RS22545 at 264.364 kb on + strand, within EX31_RS22545 at 264.509 kb on - strand, within EX31_RS22545 at 264.509 kb on - strand, within EX31_RS22545 at 264.509 kb on - strand, within EX31_RS22545 at 264.510 kb on + strand, within EX31_RS22545 at 264.643 kb on + strand, within EX31_RS22545 at 264.643 kb on + strand, within EX31_RS22545 at 264.652 kb on + strand, within EX31_RS22545 at 264.652 kb on + strand, within EX31_RS22545 at 264.652 kb on + strand, within EX31_RS22545 at 264.652 kb on + strand, within EX31_RS22545 at 264.675 kb on + strand at 264.675 kb on + strand at 264.675 kb on + strand at 264.675 kb on + strand at 264.675 kb on + strand at 264.676 kb on - strand at 264.676 kb on - strand at 264.697 kb on + strand at 264.697 kb on + strand at 264.697 kb on + strand at 264.698 kb on - strand at 264.698 kb on - strand at 264.773 kb on - strand at 264.837 kb on + strand at 264.852 kb on - strand at 264.863 kb on + strand at 264.864 kb on - strand at 264.973 kb on - strand at 264.973 kb on - strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.040 kb on + strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.041 kb on - strand at 265.058 kb on + strand at 265.440 kb on - strand, within EX31_RS22550 at 265.476 kb on + strand, within EX31_RS22550 at 265.476 kb on + strand, within EX31_RS22550 at 265.476 kb on + strand, within EX31_RS22550 at 265.476 kb on + strand, within EX31_RS22550 at 265.477 kb on - strand, within EX31_RS22550 at 265.560 kb on + strand, within EX31_RS22550 at 265.733 kb on - strand, within EX31_RS22550 at 266.011 kb on - strand, within EX31_RS22550 at 266.011 kb on - strand, within EX31_RS22550 at 266.366 kb on - strand, within EX31_RS22550 at 266.366 kb on - strand, within EX31_RS22550 at 266.392 kb on + strand, within EX31_RS22550 at 266.470 kb on - strand at 266.470 kb on - strand at 266.502 kb on - strand at 266.546 kb on - strand at 266.546 kb on - strand at 266.558 kb on - strand at 266.596 kb on - strand at 266.630 kb on + strand at 266.630 kb on + strand at 266.631 kb on - strand at 266.631 kb on - strand at 266.639 kb on + strand at 266.639 kb on + strand at 266.639 kb on + strand at 266.640 kb on - strand at 266.640 kb on - strand at 266.640 kb on - strand at 266.657 kb on + strand at 266.668 kb on + strand at 266.681 kb on + strand at 266.775 kb on + strand at 266.787 kb on - strand at 266.839 kb on + strand at 266.840 kb on - strand at 266.846 kb on + strand at 266.846 kb on + strand at 266.857 kb on + strand at 266.857 kb on + strand at 266.858 kb on - strand at 266.858 kb on - strand at 266.859 kb on + strand at 266.860 kb on - strand at 266.860 kb on - strand at 266.860 kb on - strand at 266.915 kb on + strand at 267.139 kb on + strand, within EX31_RS22560 at 267.144 kb on + strand, within EX31_RS22560 at 267.144 kb on + strand, within EX31_RS22560 at 267.145 kb on - strand, within EX31_RS22560 at 267.145 kb on - strand, within EX31_RS22560 at 267.145 kb on - strand, within EX31_RS22560 at 267.183 kb on - strand, within EX31_RS22560 at 267.183 kb on - strand, within EX31_RS22560 at 267.183 kb on - strand, within EX31_RS22560 at 267.198 kb on + strand, within EX31_RS22560 at 267.198 kb on + strand, within EX31_RS22560 at 267.284 kb on - strand, within EX31_RS22560 at 267.294 kb on + strand, within EX31_RS22560 at 267.295 kb on - strand, within EX31_RS22560 at 267.305 kb on + strand, within EX31_RS22560 at 267.306 kb on - strand, within EX31_RS22560 at 267.315 kb on - strand, within EX31_RS22560 at 267.315 kb on - strand, within EX31_RS22560 at 267.317 kb on + strand, within EX31_RS22560 at 267.317 kb on + strand, within EX31_RS22560 at 267.317 kb on + strand, within EX31_RS22560 at 267.317 kb on + strand, within EX31_RS22560 at 267.318 kb on - strand, within EX31_RS22560 at 267.318 kb on - strand, within EX31_RS22560 at 267.318 kb on - strand, within EX31_RS22560 at 267.339 kb on - strand, within EX31_RS22560 at 267.339 kb on - strand, within EX31_RS22560 at 267.344 kb on + strand, within EX31_RS22560 at 267.345 kb on - strand, within EX31_RS22560 at 267.345 kb on - strand, within EX31_RS22560 at 267.396 kb on + strand, within EX31_RS22560 at 267.465 kb on - strand, within EX31_RS22560 at 267.472 kb on - strand, within EX31_RS22560 at 267.472 kb on - strand, within EX31_RS22560
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 263,928 - EX31_RS22545 0.35 +0.9 263,928 - EX31_RS22545 0.35 +0.8 264,032 + EX31_RS22545 0.43 +1.3 264,032 + EX31_RS22545 0.43 -0.3 264,053 + EX31_RS22545 0.44 -0.8 264,054 - EX31_RS22545 0.44 +0.1 264,064 + EX31_RS22545 0.45 +0.2 264,136 + EX31_RS22545 0.51 +0.9 264,136 + EX31_RS22545 0.51 -0.2 264,172 + EX31_RS22545 0.53 -0.6 264,172 + EX31_RS22545 0.53 +1.0 264,172 + EX31_RS22545 0.53 +0.1 264,173 - EX31_RS22545 0.53 +0.5 264,331 - EX31_RS22545 0.65 -1.5 264,354 + EX31_RS22545 0.67 +0.1 264,364 + EX31_RS22545 0.68 +0.1 264,364 + EX31_RS22545 0.68 +0.6 264,364 + EX31_RS22545 0.68 +1.0 264,509 - EX31_RS22545 0.79 +0.3 264,509 - EX31_RS22545 0.79 +0.3 264,509 - EX31_RS22545 0.79 +0.1 264,510 + EX31_RS22545 0.79 +0.4 264,643 + EX31_RS22545 0.89 -0.9 264,643 + EX31_RS22545 0.89 -0.2 264,652 + EX31_RS22545 0.90 -0.0 264,652 + EX31_RS22545 0.90 +0.0 264,652 + EX31_RS22545 0.90 +0.3 264,652 + EX31_RS22545 0.90 -0.8 264,675 + -0.5 264,675 + +0.8 264,675 + +0.1 264,675 + -0.5 264,675 + +1.0 264,676 - +0.3 264,676 - +0.7 264,697 + -0.9 264,697 + -0.7 264,697 + +0.2 264,698 - +1.1 264,698 - +0.0 264,773 - -1.7 264,837 + -0.5 264,852 - +1.6 264,863 + -0.4 264,864 - -0.5 264,973 - -0.4 264,973 - +0.1 265,040 + +0.7 265,040 + -1.0 265,040 + -0.2 265,040 + -0.5 265,040 + +0.9 265,040 + -2.0 265,040 + +0.2 265,040 + +0.5 265,041 - +0.0 265,041 - -0.4 265,041 - -1.0 265,041 - -0.5 265,041 - -0.2 265,041 - -1.6 265,041 - +0.1 265,041 - -0.6 265,041 - +0.8 265,041 - +0.1 265,041 - +0.6 265,041 - -0.0 265,041 - +0.6 265,041 - -0.5 265,041 - -1.1 265,041 - +1.3 265,041 - -0.6 265,041 - +1.7 265,041 - +0.5 265,041 - -0.5 265,058 + -0.6 265,440 - EX31_RS22550 0.31 -0.3 265,476 + EX31_RS22550 0.33 -2.0 265,476 + EX31_RS22550 0.33 -0.9 265,476 + EX31_RS22550 0.33 -0.7 265,476 + EX31_RS22550 0.33 -0.2 265,477 - EX31_RS22550 0.33 -0.3 265,560 + EX31_RS22550 0.38 -2.0 265,733 - EX31_RS22550 0.48 -0.4 266,011 - EX31_RS22550 0.65 +0.2 266,011 - EX31_RS22550 0.65 -0.3 266,366 - EX31_RS22550 0.86 -0.3 266,366 - EX31_RS22550 0.86 -0.9 266,392 + EX31_RS22550 0.87 +0.3 266,470 - -0.4 266,470 - +0.5 266,502 - -1.5 266,546 - -0.4 266,546 - -0.4 266,558 - +0.2 266,596 - +0.5 266,630 + +0.3 266,630 + +0.7 266,631 - -0.4 266,631 - +0.0 266,639 + -0.8 266,639 + +0.1 266,639 + +0.0 266,640 - -0.3 266,640 - -0.3 266,640 - +0.2 266,657 + -0.2 266,668 + +0.1 266,681 + -0.2 266,775 + +0.7 266,787 - +0.2 266,839 + +0.8 266,840 - -1.1 266,846 + -0.1 266,846 + +0.1 266,857 + -1.0 266,857 + -0.9 266,858 - +0.2 266,858 - -1.3 266,859 + -1.0 266,860 - -0.0 266,860 - +0.6 266,860 - +0.5 266,915 + -0.8 267,139 + EX31_RS22560 0.24 -0.8 267,144 + EX31_RS22560 0.25 -0.4 267,144 + EX31_RS22560 0.25 +0.6 267,145 - EX31_RS22560 0.25 +0.2 267,145 - EX31_RS22560 0.25 -0.5 267,145 - EX31_RS22560 0.25 +0.6 267,183 - EX31_RS22560 0.28 -1.6 267,183 - EX31_RS22560 0.28 +0.1 267,183 - EX31_RS22560 0.28 -0.4 267,198 + EX31_RS22560 0.29 -0.4 267,198 + EX31_RS22560 0.29 -0.5 267,284 - EX31_RS22560 0.36 +0.6 267,294 + EX31_RS22560 0.37 -0.7 267,295 - EX31_RS22560 0.37 +0.0 267,305 + EX31_RS22560 0.38 +1.0 267,306 - EX31_RS22560 0.38 +0.5 267,315 - EX31_RS22560 0.39 +0.3 267,315 - EX31_RS22560 0.39 +0.1 267,317 + EX31_RS22560 0.39 +0.8 267,317 + EX31_RS22560 0.39 -0.2 267,317 + EX31_RS22560 0.39 -0.3 267,317 + EX31_RS22560 0.39 -0.9 267,318 - EX31_RS22560 0.39 -0.6 267,318 - EX31_RS22560 0.39 -0.2 267,318 - EX31_RS22560 0.39 +0.4 267,339 - EX31_RS22560 0.41 +0.3 267,339 - EX31_RS22560 0.41 +0.5 267,344 + EX31_RS22560 0.41 -0.7 267,345 - EX31_RS22560 0.41 -1.3 267,345 - EX31_RS22560 0.41 -0.5 267,396 + EX31_RS22560 0.45 +0.4 267,465 - EX31_RS22560 0.51 -0.3 267,472 - EX31_RS22560 0.52 -1.4 267,472 - EX31_RS22560 0.52 +1.0
Or see this region's nucleotide sequence