Strain Fitness in Rahnella sp. WP5 around EX31_RS22315

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22310 and EX31_RS22315 are separated by 341 nucleotidesEX31_RS22315 and EX31_RS22320 are separated by 85 nucleotides EX31_RS22310: EX31_RS22310 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 214,526 to 216,355 _RS22310 EX31_RS22315: EX31_RS22315 - P-II family nitrogen regulator, at 216,697 to 217,035 _RS22315 EX31_RS22320: EX31_RS22320 - ammonium transporter AmtB, at 217,121 to 218,410 _RS22320 Position (kb) 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 215.713 kb on + strand, within EX31_RS22310at 215.714 kb on - strand, within EX31_RS22310at 215.739 kb on - strand, within EX31_RS22310at 215.779 kb on + strand, within EX31_RS22310at 215.779 kb on + strand, within EX31_RS22310at 215.779 kb on + strand, within EX31_RS22310at 215.780 kb on - strand, within EX31_RS22310at 215.818 kb on + strand, within EX31_RS22310at 215.818 kb on + strand, within EX31_RS22310at 215.818 kb on + strand, within EX31_RS22310at 215.819 kb on - strand, within EX31_RS22310at 215.869 kb on + strand, within EX31_RS22310at 215.870 kb on - strand, within EX31_RS22310at 215.890 kb on + strand, within EX31_RS22310at 215.971 kb on + strand, within EX31_RS22310at 215.971 kb on + strand, within EX31_RS22310at 215.971 kb on + strand, within EX31_RS22310at 215.972 kb on - strand, within EX31_RS22310at 216.148 kb on + strand, within EX31_RS22310at 216.148 kb on + strand, within EX31_RS22310at 216.148 kb on + strand, within EX31_RS22310at 216.200 kb on - strandat 216.275 kb on + strandat 216.284 kb on + strandat 216.284 kb on + strandat 216.284 kb on + strandat 216.284 kb on + strandat 216.284 kb on + strandat 216.284 kb on + strandat 216.285 kb on - strandat 216.331 kb on + strandat 216.332 kb on - strandat 216.354 kb on - strandat 216.440 kb on + strandat 216.440 kb on + strandat 216.441 kb on - strandat 216.441 kb on - strandat 216.441 kb on - strandat 216.441 kb on - strandat 216.441 kb on - strandat 216.441 kb on - strandat 216.500 kb on + strandat 216.500 kb on + strandat 216.500 kb on + strandat 216.500 kb on + strandat 216.501 kb on - strandat 216.501 kb on - strandat 216.501 kb on - strandat 216.501 kb on - strandat 216.528 kb on + strandat 216.529 kb on - strandat 216.577 kb on - strandat 216.577 kb on - strandat 216.729 kb on + strandat 216.795 kb on + strand, within EX31_RS22315at 216.833 kb on - strand, within EX31_RS22315at 216.847 kb on + strand, within EX31_RS22315at 216.848 kb on - strand, within EX31_RS22315at 216.848 kb on - strand, within EX31_RS22315at 216.848 kb on - strand, within EX31_RS22315at 216.889 kb on - strand, within EX31_RS22315at 216.940 kb on + strand, within EX31_RS22315at 216.941 kb on - strand, within EX31_RS22315at 216.949 kb on - strand, within EX31_RS22315at 217.047 kb on + strandat 217.048 kb on - strandat 217.048 kb on - strandat 217.056 kb on + strandat 217.056 kb on + strandat 217.056 kb on + strandat 217.057 kb on - strandat 217.057 kb on - strandat 217.057 kb on - strandat 217.057 kb on - strandat 217.134 kb on + strandat 217.226 kb on - strandat 217.226 kb on - strandat 217.283 kb on + strand, within EX31_RS22320at 217.294 kb on - strand, within EX31_RS22320at 217.294 kb on - strand, within EX31_RS22320at 217.294 kb on - strand, within EX31_RS22320at 217.373 kb on + strand, within EX31_RS22320at 217.379 kb on + strand, within EX31_RS22320at 217.380 kb on - strand, within EX31_RS22320at 217.516 kb on + strand, within EX31_RS22320at 217.517 kb on - strand, within EX31_RS22320at 217.557 kb on + strand, within EX31_RS22320at 217.557 kb on + strand, within EX31_RS22320at 217.557 kb on + strand, within EX31_RS22320at 217.557 kb on + strand, within EX31_RS22320at 217.557 kb on + strand, within EX31_RS22320at 217.558 kb on - strand, within EX31_RS22320at 217.558 kb on - strand, within EX31_RS22320at 217.558 kb on - strand, within EX31_RS22320at 217.558 kb on - strand, within EX31_RS22320at 217.558 kb on - strand, within EX31_RS22320at 217.607 kb on + strand, within EX31_RS22320at 217.607 kb on + strand, within EX31_RS22320at 217.727 kb on + strand, within EX31_RS22320at 217.727 kb on + strand, within EX31_RS22320at 217.727 kb on + strand, within EX31_RS22320at 217.728 kb on - strand, within EX31_RS22320at 217.728 kb on - strand, within EX31_RS22320at 217.728 kb on - strand, within EX31_RS22320at 217.728 kb on - strand, within EX31_RS22320at 217.814 kb on + strand, within EX31_RS22320at 217.814 kb on + strand, within EX31_RS22320at 217.814 kb on + strand, within EX31_RS22320at 217.814 kb on + strand, within EX31_RS22320at 217.814 kb on + strand, within EX31_RS22320at 217.815 kb on - strand, within EX31_RS22320at 217.815 kb on - strand, within EX31_RS22320at 218.021 kb on - strand, within EX31_RS22320at 218.021 kb on - strand, within EX31_RS22320

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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215,713 + EX31_RS22310 0.65 -0.4
215,714 - EX31_RS22310 0.65 +0.4
215,739 - EX31_RS22310 0.66 -0.1
215,779 + EX31_RS22310 0.68 -0.6
215,779 + EX31_RS22310 0.68 -2.7
215,779 + EX31_RS22310 0.68 -0.8
215,780 - EX31_RS22310 0.69 -1.4
215,818 + EX31_RS22310 0.71 +0.4
215,818 + EX31_RS22310 0.71 -0.2
215,818 + EX31_RS22310 0.71 -0.2
215,819 - EX31_RS22310 0.71 +0.5
215,869 + EX31_RS22310 0.73 +0.1
215,870 - EX31_RS22310 0.73 +0.3
215,890 + EX31_RS22310 0.75 -0.7
215,971 + EX31_RS22310 0.79 +0.7
215,971 + EX31_RS22310 0.79 -1.2
215,971 + EX31_RS22310 0.79 +0.4
215,972 - EX31_RS22310 0.79 +0.1
216,148 + EX31_RS22310 0.89 +0.7
216,148 + EX31_RS22310 0.89 +0.4
216,148 + EX31_RS22310 0.89 +0.8
216,200 - +1.2
216,275 + +0.6
216,284 + +0.6
216,284 + +0.2
216,284 + +1.1
216,284 + +0.3
216,284 + +0.1
216,284 + -0.2
216,285 - -1.0
216,331 + +2.1
216,332 - -0.6
216,354 - -0.1
216,440 + -0.6
216,440 + +0.3
216,441 - -0.5
216,441 - +0.9
216,441 - -0.0
216,441 - +0.0
216,441 - +0.2
216,441 - +0.1
216,500 + -0.1
216,500 + -0.5
216,500 + +0.9
216,500 + +1.1
216,501 - -0.1
216,501 - -1.1
216,501 - -0.8
216,501 - +0.1
216,528 + -0.1
216,529 - -0.4
216,577 - -0.1
216,577 - -0.7
216,729 + -0.0
216,795 + EX31_RS22315 0.29 -0.1
216,833 - EX31_RS22315 0.40 +0.2
216,847 + EX31_RS22315 0.44 -0.3
216,848 - EX31_RS22315 0.45 -1.4
216,848 - EX31_RS22315 0.45 -1.4
216,848 - EX31_RS22315 0.45 -0.0
216,889 - EX31_RS22315 0.57 -0.5
216,940 + EX31_RS22315 0.72 -0.9
216,941 - EX31_RS22315 0.72 -0.3
216,949 - EX31_RS22315 0.74 -0.3
217,047 + -0.4
217,048 - +0.2
217,048 - +0.1
217,056 + +0.3
217,056 + -2.0
217,056 + -0.8
217,057 - -1.2
217,057 - +0.2
217,057 - -0.1
217,057 - +0.4
217,134 + -0.5
217,226 - -1.4
217,226 - +0.7
217,283 + EX31_RS22320 0.13 +0.8
217,294 - EX31_RS22320 0.13 -1.4
217,294 - EX31_RS22320 0.13 -0.2
217,294 - EX31_RS22320 0.13 +0.2
217,373 + EX31_RS22320 0.20 +0.3
217,379 + EX31_RS22320 0.20 -0.8
217,380 - EX31_RS22320 0.20 -1.0
217,516 + EX31_RS22320 0.31 +0.1
217,517 - EX31_RS22320 0.31 -0.1
217,557 + EX31_RS22320 0.34 +0.5
217,557 + EX31_RS22320 0.34 -0.8
217,557 + EX31_RS22320 0.34 -0.3
217,557 + EX31_RS22320 0.34 +0.0
217,557 + EX31_RS22320 0.34 +0.9
217,558 - EX31_RS22320 0.34 +0.3
217,558 - EX31_RS22320 0.34 -1.3
217,558 - EX31_RS22320 0.34 +0.3
217,558 - EX31_RS22320 0.34 +1.9
217,558 - EX31_RS22320 0.34 +0.6
217,607 + EX31_RS22320 0.38 -0.1
217,607 + EX31_RS22320 0.38 -1.0
217,727 + EX31_RS22320 0.47 +0.2
217,727 + EX31_RS22320 0.47 -1.5
217,727 + EX31_RS22320 0.47 +0.5
217,728 - EX31_RS22320 0.47 -0.0
217,728 - EX31_RS22320 0.47 +0.3
217,728 - EX31_RS22320 0.47 -0.7
217,728 - EX31_RS22320 0.47 -0.0
217,814 + EX31_RS22320 0.54 -1.2
217,814 + EX31_RS22320 0.54 +0.7
217,814 + EX31_RS22320 0.54 -1.0
217,814 + EX31_RS22320 0.54 -0.4
217,814 + EX31_RS22320 0.54 -0.4
217,815 - EX31_RS22320 0.54 -0.1
217,815 - EX31_RS22320 0.54 +1.2
218,021 - EX31_RS22320 0.70 +0.4
218,021 - EX31_RS22320 0.70 -0.3

Or see this region's nucleotide sequence