Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20925 and EX31_RS20930 are separated by 54 nucleotides EX31_RS20930 and EX31_RS20935 are separated by 75 nucleotides EX31_RS20935 and EX31_RS20940 are separated by 137 nucleotides EX31_RS20940 and EX31_RS20945 are separated by 326 nucleotides
EX31_RS20925: EX31_RS20925 - hypothetical protein, at 831,422 to 831,787
_RS20925
EX31_RS20930: EX31_RS20930 - hypothetical protein, at 831,842 to 832,132
_RS20930
EX31_RS20935: EX31_RS20935 - hypothetical protein, at 832,208 to 832,444
_RS20935
EX31_RS20940: EX31_RS20940 - AlpA family transcriptional regulator, at 832,582 to 832,785
_RS20940
EX31_RS20945: EX31_RS20945 - tyrosine-type recombinase/integrase, at 833,112 to 834,326
_RS20945
Position (kb) 832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.631 kb on - strand, within EX31_RS20925 at 831.746 kb on + strand, within EX31_RS20925 at 831.920 kb on - strand, within EX31_RS20930 at 831.976 kb on - strand, within EX31_RS20930 at 832.100 kb on - strand, within EX31_RS20930 at 832.224 kb on - strand at 832.251 kb on - strand, within EX31_RS20935 at 832.292 kb on + strand, within EX31_RS20935 at 832.414 kb on + strand, within EX31_RS20935 at 832.415 kb on - strand, within EX31_RS20935 at 832.549 kb on - strand at 832.599 kb on + strand at 832.716 kb on - strand, within EX31_RS20940 at 832.731 kb on + strand, within EX31_RS20940 at 832.731 kb on + strand, within EX31_RS20940 at 832.785 kb on + strand at 832.786 kb on - strand at 832.787 kb on + strand at 832.787 kb on + strand at 832.787 kb on + strand at 832.787 kb on + strand at 832.815 kb on + strand at 832.815 kb on + strand at 832.815 kb on + strand at 832.816 kb on - strand at 832.816 kb on - strand at 832.816 kb on - strand at 832.816 kb on - strand at 832.818 kb on + strand at 832.819 kb on - strand at 832.834 kb on - strand at 832.933 kb on + strand at 832.940 kb on - strand at 832.956 kb on + strand at 832.956 kb on + strand at 832.957 kb on - strand at 832.994 kb on + strand at 833.069 kb on + strand at 833.069 kb on + strand at 833.085 kb on + strand at 833.085 kb on + strand at 833.085 kb on + strand at 833.086 kb on - strand at 833.086 kb on - strand at 833.086 kb on - strand at 833.086 kb on - strand at 833.107 kb on + strand at 833.107 kb on + strand at 833.171 kb on + strand at 833.171 kb on + strand at 833.172 kb on - strand at 833.172 kb on - strand at 833.172 kb on - strand at 833.173 kb on + strand at 833.173 kb on + strand at 833.173 kb on + strand at 833.173 kb on + strand at 833.173 kb on + strand at 833.174 kb on - strand at 833.174 kb on - strand at 833.174 kb on - strand at 833.174 kb on - strand at 833.174 kb on - strand at 833.183 kb on - strand at 833.215 kb on + strand at 833.216 kb on - strand at 833.230 kb on + strand at 833.230 kb on + strand at 833.230 kb on + strand at 833.231 kb on - strand at 833.231 kb on - strand at 833.231 kb on - strand at 833.231 kb on - strand at 833.231 kb on - strand at 833.243 kb on + strand, within EX31_RS20945 at 833.253 kb on - strand, within EX31_RS20945 at 833.293 kb on + strand, within EX31_RS20945 at 833.293 kb on + strand, within EX31_RS20945 at 833.293 kb on + strand, within EX31_RS20945 at 833.294 kb on - strand, within EX31_RS20945 at 833.294 kb on - strand, within EX31_RS20945 at 833.324 kb on + strand, within EX31_RS20945 at 833.324 kb on + strand, within EX31_RS20945 at 833.325 kb on - strand, within EX31_RS20945 at 833.325 kb on - strand, within EX31_RS20945 at 833.325 kb on - strand, within EX31_RS20945 at 833.325 kb on - strand, within EX31_RS20945 at 833.325 kb on - strand, within EX31_RS20945 at 833.357 kb on + strand, within EX31_RS20945 at 833.358 kb on - strand, within EX31_RS20945 at 833.358 kb on - strand, within EX31_RS20945 at 833.358 kb on - strand, within EX31_RS20945 at 833.376 kb on + strand, within EX31_RS20945 at 833.376 kb on + strand, within EX31_RS20945 at 833.377 kb on - strand, within EX31_RS20945 at 833.377 kb on - strand, within EX31_RS20945 at 833.387 kb on + strand, within EX31_RS20945 at 833.408 kb on + strand, within EX31_RS20945 at 833.408 kb on + strand, within EX31_RS20945 at 833.408 kb on + strand, within EX31_RS20945 at 833.408 kb on + strand, within EX31_RS20945 at 833.409 kb on - strand, within EX31_RS20945 at 833.409 kb on - strand, within EX31_RS20945 at 833.409 kb on - strand, within EX31_RS20945 at 833.409 kb on - strand, within EX31_RS20945 at 833.437 kb on - strand, within EX31_RS20945 at 833.482 kb on - strand, within EX31_RS20945 at 833.492 kb on + strand, within EX31_RS20945 at 833.493 kb on - strand, within EX31_RS20945 at 833.493 kb on - strand, within EX31_RS20945 at 833.493 kb on - strand, within EX31_RS20945 at 833.493 kb on - strand, within EX31_RS20945 at 833.616 kb on - strand, within EX31_RS20945 at 833.616 kb on - strand, within EX31_RS20945 at 833.663 kb on - strand, within EX31_RS20945 at 833.678 kb on + strand, within EX31_RS20945 at 833.678 kb on + strand, within EX31_RS20945 at 833.706 kb on - strand, within EX31_RS20945 at 833.768 kb on + strand, within EX31_RS20945 at 833.769 kb on - strand, within EX31_RS20945 at 833.769 kb on - strand, within EX31_RS20945 at 833.770 kb on + strand, within EX31_RS20945
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 831,631 - EX31_RS20925 0.57 -0.3 831,746 + EX31_RS20925 0.89 +0.6 831,920 - EX31_RS20930 0.27 +0.2 831,976 - EX31_RS20930 0.46 -0.4 832,100 - EX31_RS20930 0.89 +1.5 832,224 - -0.6 832,251 - EX31_RS20935 0.18 +0.6 832,292 + EX31_RS20935 0.35 +0.6 832,414 + EX31_RS20935 0.87 -0.5 832,415 - EX31_RS20935 0.87 -0.6 832,549 - +1.3 832,599 + -0.5 832,716 - EX31_RS20940 0.66 -0.5 832,731 + EX31_RS20940 0.73 +0.0 832,731 + EX31_RS20940 0.73 -0.9 832,785 + +0.1 832,786 - -0.3 832,787 + -0.3 832,787 + -0.4 832,787 + -0.1 832,787 + -0.5 832,815 + +0.1 832,815 + -0.6 832,815 + -0.3 832,816 - -0.4 832,816 - -0.2 832,816 - +1.2 832,816 - +0.5 832,818 + +0.5 832,819 - -0.0 832,834 - +0.6 832,933 + +0.2 832,940 - +0.3 832,956 + +1.0 832,956 + +0.4 832,957 - +0.4 832,994 + -0.1 833,069 + +0.2 833,069 + +0.2 833,085 + +0.6 833,085 + -0.0 833,085 + +0.3 833,086 - +0.6 833,086 - +0.1 833,086 - -0.4 833,086 - -0.6 833,107 + -0.0 833,107 + -0.9 833,171 + +0.7 833,171 + +1.3 833,172 - -0.1 833,172 - -0.9 833,172 - -0.3 833,173 + +0.4 833,173 + +0.1 833,173 + -0.2 833,173 + -0.7 833,173 + +0.1 833,174 - +0.6 833,174 - -0.0 833,174 - +0.4 833,174 - -0.2 833,174 - -2.0 833,183 - -0.0 833,215 + +0.0 833,216 - +0.5 833,230 + -0.8 833,230 + -0.8 833,230 + +0.5 833,231 - -0.4 833,231 - -0.1 833,231 - +0.4 833,231 - +0.5 833,231 - -0.7 833,243 + EX31_RS20945 0.11 -0.6 833,253 - EX31_RS20945 0.12 -0.0 833,293 + EX31_RS20945 0.15 -0.9 833,293 + EX31_RS20945 0.15 +1.6 833,293 + EX31_RS20945 0.15 -0.3 833,294 - EX31_RS20945 0.15 -0.3 833,294 - EX31_RS20945 0.15 -0.7 833,324 + EX31_RS20945 0.17 +0.8 833,324 + EX31_RS20945 0.17 -0.3 833,325 - EX31_RS20945 0.18 -0.4 833,325 - EX31_RS20945 0.18 +1.4 833,325 - EX31_RS20945 0.18 +0.4 833,325 - EX31_RS20945 0.18 -0.7 833,325 - EX31_RS20945 0.18 +0.1 833,357 + EX31_RS20945 0.20 -1.1 833,358 - EX31_RS20945 0.20 +0.6 833,358 - EX31_RS20945 0.20 -0.4 833,358 - EX31_RS20945 0.20 +0.4 833,376 + EX31_RS20945 0.22 +0.6 833,376 + EX31_RS20945 0.22 +0.3 833,377 - EX31_RS20945 0.22 +0.2 833,377 - EX31_RS20945 0.22 +0.1 833,387 + EX31_RS20945 0.23 -1.0 833,408 + EX31_RS20945 0.24 +0.1 833,408 + EX31_RS20945 0.24 +0.5 833,408 + EX31_RS20945 0.24 +0.8 833,408 + EX31_RS20945 0.24 +0.9 833,409 - EX31_RS20945 0.24 -0.4 833,409 - EX31_RS20945 0.24 -0.4 833,409 - EX31_RS20945 0.24 +0.5 833,409 - EX31_RS20945 0.24 +0.2 833,437 - EX31_RS20945 0.27 +0.0 833,482 - EX31_RS20945 0.30 -0.5 833,492 + EX31_RS20945 0.31 -0.3 833,493 - EX31_RS20945 0.31 -0.2 833,493 - EX31_RS20945 0.31 -0.8 833,493 - EX31_RS20945 0.31 +0.2 833,493 - EX31_RS20945 0.31 -0.2 833,616 - EX31_RS20945 0.41 +0.7 833,616 - EX31_RS20945 0.41 +0.4 833,663 - EX31_RS20945 0.45 +0.6 833,678 + EX31_RS20945 0.47 -0.4 833,678 + EX31_RS20945 0.47 +1.9 833,706 - EX31_RS20945 0.49 -0.3 833,768 + EX31_RS20945 0.54 +0.4 833,769 - EX31_RS20945 0.54 +0.6 833,769 - EX31_RS20945 0.54 -0.4 833,770 + EX31_RS20945 0.54 -1.6
Or see this region's nucleotide sequence