Strain Fitness in Rahnella sp. WP5 around EX31_RS20870

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20860 and EX31_RS25595 are separated by 357 nucleotidesEX31_RS25595 and EX31_RS20865 are separated by 47 nucleotidesEX31_RS20865 and EX31_RS20870 are separated by 37 nucleotidesEX31_RS20870 and EX31_RS20880 are separated by 632 nucleotides EX31_RS20860: EX31_RS20860 - hypothetical protein, at 819,550 to 820,035 _RS20860 EX31_RS25595: EX31_RS25595 - hypothetical protein, at 820,393 to 820,623 _RS25595 EX31_RS20865: EX31_RS20865 - bacteriocin immunity protein, at 820,671 to 820,925 _RS20865 EX31_RS20870: EX31_RS20870 - colicin, at 820,963 to 821,226 _RS20870 EX31_RS20880: EX31_RS20880 - hypothetical protein, at 821,859 to 823,301 _RS20880 Position (kb) 820 821 822Strain fitness (log2 ratio) -2 -1 0 1 2at 820.040 kb on - strandat 820.085 kb on - strandat 820.135 kb on + strandat 820.148 kb on - strandat 820.337 kb on + strandat 820.435 kb on - strand, within EX31_RS25595at 820.473 kb on + strand, within EX31_RS25595at 820.489 kb on + strand, within EX31_RS25595at 820.620 kb on + strandat 820.624 kb on - strandat 820.624 kb on - strandat 820.728 kb on + strand, within EX31_RS20865at 820.728 kb on + strand, within EX31_RS20865at 820.728 kb on + strand, within EX31_RS20865at 820.729 kb on - strand, within EX31_RS20865at 820.729 kb on - strand, within EX31_RS20865at 820.834 kb on + strand, within EX31_RS20865at 820.897 kb on + strand, within EX31_RS20865at 820.911 kb on - strandat 820.911 kb on - strandat 820.999 kb on - strand, within EX31_RS20870at 821.022 kb on - strand, within EX31_RS20870at 821.026 kb on - strand, within EX31_RS20870at 821.026 kb on - strand, within EX31_RS20870at 821.096 kb on + strand, within EX31_RS20870at 821.096 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.140 kb on + strand, within EX31_RS20870at 821.150 kb on + strand, within EX31_RS20870at 821.150 kb on + strand, within EX31_RS20870at 821.191 kb on - strand, within EX31_RS20870at 821.365 kb on + strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.408 kb on + strandat 821.409 kb on - strandat 821.409 kb on - strandat 821.454 kb on - strandat 821.485 kb on - strandat 821.561 kb on - strandat 821.561 kb on - strandat 821.561 kb on - strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.573 kb on - strandat 821.592 kb on + strandat 821.592 kb on + strandat 821.593 kb on - strandat 821.593 kb on - strandat 821.593 kb on - strandat 821.606 kb on + strandat 821.628 kb on + strandat 821.628 kb on + strandat 821.635 kb on + strandat 821.648 kb on - strandat 821.648 kb on - strandat 821.661 kb on - strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.672 kb on - strandat 821.672 kb on - strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.797 kb on - strandat 821.855 kb on - strandat 821.856 kb on + strandat 822.090 kb on - strand, within EX31_RS20880

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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820,040 - -0.5
820,085 - -0.7
820,135 + -0.2
820,148 - +2.1
820,337 + +0.9
820,435 - EX31_RS25595 0.18 +0.8
820,473 + EX31_RS25595 0.35 -0.7
820,489 + EX31_RS25595 0.42 +0.6
820,620 + +0.9
820,624 - +1.3
820,624 - -1.6
820,728 + EX31_RS20865 0.22 -0.4
820,728 + EX31_RS20865 0.22 -0.1
820,728 + EX31_RS20865 0.22 -0.7
820,729 - EX31_RS20865 0.23 +0.1
820,729 - EX31_RS20865 0.23 +0.2
820,834 + EX31_RS20865 0.64 -0.3
820,897 + EX31_RS20865 0.89 +0.5
820,911 - -0.4
820,911 - -0.2
820,999 - EX31_RS20870 0.14 -0.2
821,022 - EX31_RS20870 0.22 +0.1
821,026 - EX31_RS20870 0.24 -0.8
821,026 - EX31_RS20870 0.24 -0.1
821,096 + EX31_RS20870 0.50 +0.0
821,096 + EX31_RS20870 0.50 +0.8
821,100 + EX31_RS20870 0.52 -0.7
821,100 + EX31_RS20870 0.52 -0.9
821,100 + EX31_RS20870 0.52 -0.4
821,101 - EX31_RS20870 0.52 +0.5
821,101 - EX31_RS20870 0.52 -0.6
821,101 - EX31_RS20870 0.52 -1.1
821,140 + EX31_RS20870 0.67 +1.5
821,150 + EX31_RS20870 0.71 -1.1
821,150 + EX31_RS20870 0.71 -0.9
821,191 - EX31_RS20870 0.86 -1.8
821,365 + -2.2
821,366 - -1.5
821,366 - -0.2
821,366 - -0.2
821,366 - -1.2
821,408 + -0.2
821,409 - +0.4
821,409 - -0.6
821,454 - -0.0
821,485 - +0.0
821,561 - -1.9
821,561 - +0.5
821,561 - -0.5
821,563 + -0.2
821,563 + -0.9
821,563 + -0.8
821,563 + -0.4
821,564 - -1.0
821,564 - -0.6
821,564 - +0.0
821,573 - -0.4
821,592 + +0.1
821,592 + +0.4
821,593 - +0.3
821,593 - -0.1
821,593 - -0.2
821,606 + +1.3
821,628 + -0.2
821,628 + -0.2
821,635 + -0.7
821,648 - +0.1
821,648 - +0.2
821,661 - -2.4
821,671 + +0.4
821,671 + +1.0
821,671 + -0.2
821,671 + -0.0
821,671 + -0.4
821,672 - +0.5
821,672 - +0.1
821,673 + +1.1
821,673 + -1.2
821,673 + -0.9
821,673 + -0.1
821,673 + +0.4
821,673 + -0.3
821,673 + +0.3
821,673 + +0.7
821,673 + +0.6
821,674 - -0.9
821,674 - -0.2
821,674 - +0.6
821,674 - +0.4
821,674 - -1.1
821,675 + +1.1
821,675 + -0.0
821,675 + -0.7
821,675 + -0.3
821,675 + -0.7
821,676 - -0.1
821,676 - +0.1
821,676 - +1.2
821,676 - -0.4
821,749 + +1.0
821,749 + -0.9
821,749 + -0.2
821,749 + -0.3
821,749 + -0.3
821,749 + +0.5
821,797 - +0.4
821,855 - -0.5
821,856 + +0.4
822,090 - EX31_RS20880 0.16 +0.9

Or see this region's nucleotide sequence