Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20100 and EX31_RS20105 are separated by 263 nucleotides EX31_RS20105 and EX31_RS20110 are separated by 151 nucleotides EX31_RS20110 and EX31_RS20115 are separated by 7 nucleotides EX31_RS20115 and EX31_RS20120 are separated by 65 nucleotides
EX31_RS20100: EX31_RS20100 - glutamate--tRNA ligase, at 649,677 to 651,095
_RS20100
EX31_RS20105: EX31_RS20105 - tRNA-Val, at 651,359 to 651,434
_RS20105
EX31_RS20110: EX31_RS20110 - tRNA-Val, at 651,586 to 651,661
_RS20110
EX31_RS20115: EX31_RS20115 - tRNA-Lys, at 651,669 to 651,744
_RS20115
EX31_RS20120: EX31_RS20120 - ethanolamine ammonia-lyase subunit EutC, at 651,810 to 652,619
_RS20120
Position (kb) 651
652 Strain fitness (log2 ratio) -1
0
1 at 651.216 kb on + strand at 651.217 kb on - strand at 651.366 kb on + strand at 651.366 kb on + strand at 651.378 kb on + strand, within EX31_RS20105 at 651.378 kb on + strand, within EX31_RS20105 at 651.378 kb on + strand, within EX31_RS20105 at 651.378 kb on + strand, within EX31_RS20105 at 651.378 kb on + strand, within EX31_RS20105 at 651.378 kb on + strand, within EX31_RS20105 at 651.762 kb on + strand at 651.762 kb on + strand at 651.762 kb on + strand at 651.764 kb on + strand at 651.764 kb on + strand at 651.764 kb on + strand at 651.764 kb on + strand at 651.764 kb on + strand at 651.764 kb on + strand at 651.786 kb on - strand at 651.811 kb on + strand at 651.811 kb on + strand at 651.839 kb on + strand at 651.839 kb on + strand at 651.839 kb on + strand at 651.839 kb on + strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.840 kb on - strand at 651.977 kb on + strand, within EX31_RS20120 at 651.978 kb on - strand, within EX31_RS20120 at 651.978 kb on - strand, within EX31_RS20120 at 652.007 kb on + strand, within EX31_RS20120 at 652.007 kb on + strand, within EX31_RS20120 at 652.008 kb on - strand, within EX31_RS20120 at 652.008 kb on - strand, within EX31_RS20120 at 652.008 kb on - strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.027 kb on + strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.028 kb on - strand, within EX31_RS20120 at 652.035 kb on + strand, within EX31_RS20120 at 652.186 kb on + strand, within EX31_RS20120 at 652.289 kb on + strand, within EX31_RS20120 at 652.351 kb on + strand, within EX31_RS20120 at 652.351 kb on + strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.352 kb on - strand, within EX31_RS20120 at 652.409 kb on - strand, within EX31_RS20120 at 652.409 kb on - strand, within EX31_RS20120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 651,216 + -0.1 651,217 - +0.4 651,366 + -0.1 651,366 + -0.3 651,378 + EX31_RS20105 0.25 -1.2 651,378 + EX31_RS20105 0.25 -0.8 651,378 + EX31_RS20105 0.25 -0.3 651,378 + EX31_RS20105 0.25 -0.1 651,378 + EX31_RS20105 0.25 -1.2 651,378 + EX31_RS20105 0.25 -0.4 651,762 + -0.3 651,762 + -0.1 651,762 + +0.2 651,764 + -0.3 651,764 + -0.8 651,764 + -1.2 651,764 + +0.3 651,764 + -0.1 651,764 + +0.2 651,786 - +0.7 651,811 + -0.3 651,811 + +0.7 651,839 + -1.3 651,839 + +0.3 651,839 + -0.2 651,839 + -0.0 651,840 - +0.6 651,840 - +1.2 651,840 - -0.6 651,977 + EX31_RS20120 0.21 +0.2 651,978 - EX31_RS20120 0.21 -0.2 651,978 - EX31_RS20120 0.21 -0.2 652,007 + EX31_RS20120 0.24 -1.0 652,007 + EX31_RS20120 0.24 -1.0 652,008 - EX31_RS20120 0.24 -1.5 652,008 - EX31_RS20120 0.24 +0.9 652,008 - EX31_RS20120 0.24 +0.3 652,027 + EX31_RS20120 0.27 -1.2 652,027 + EX31_RS20120 0.27 -1.0 652,027 + EX31_RS20120 0.27 -0.9 652,027 + EX31_RS20120 0.27 +0.4 652,027 + EX31_RS20120 0.27 -0.3 652,027 + EX31_RS20120 0.27 -0.6 652,027 + EX31_RS20120 0.27 +0.0 652,027 + EX31_RS20120 0.27 -0.2 652,027 + EX31_RS20120 0.27 -0.1 652,028 - EX31_RS20120 0.27 +1.7 652,028 - EX31_RS20120 0.27 +0.6 652,028 - EX31_RS20120 0.27 +0.2 652,028 - EX31_RS20120 0.27 -0.6 652,028 - EX31_RS20120 0.27 -0.7 652,028 - EX31_RS20120 0.27 -0.1 652,028 - EX31_RS20120 0.27 +1.1 652,028 - EX31_RS20120 0.27 -0.6 652,028 - EX31_RS20120 0.27 -0.0 652,028 - EX31_RS20120 0.27 -0.1 652,028 - EX31_RS20120 0.27 -1.6 652,028 - EX31_RS20120 0.27 +0.2 652,028 - EX31_RS20120 0.27 +0.8 652,035 + EX31_RS20120 0.28 +0.6 652,186 + EX31_RS20120 0.46 -0.4 652,289 + EX31_RS20120 0.59 +0.8 652,351 + EX31_RS20120 0.67 -0.8 652,351 + EX31_RS20120 0.67 +0.6 652,352 - EX31_RS20120 0.67 -0.0 652,352 - EX31_RS20120 0.67 -0.3 652,352 - EX31_RS20120 0.67 +0.0 652,352 - EX31_RS20120 0.67 -0.3 652,352 - EX31_RS20120 0.67 -0.1 652,352 - EX31_RS20120 0.67 -1.1 652,409 - EX31_RS20120 0.74 -0.8 652,409 - EX31_RS20120 0.74 -0.0
Or see this region's nucleotide sequence