Strain Fitness in Rahnella sp. WP5 around EX31_RS18470

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18465 and EX31_RS18470 are separated by 40 nucleotidesEX31_RS18470 and EX31_RS18475 are separated by 106 nucleotides EX31_RS18465: EX31_RS18465 - tyrosine-type recombinase/integrase, at 262,922 to 263,908 _RS18465 EX31_RS18470: EX31_RS18470 - pyruvate formate lyase 1-activating protein, at 263,949 to 264,746 _RS18470 EX31_RS18475: EX31_RS18475 - MFS transporter, at 264,853 to 265,998 _RS18475 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 262.966 kb on - strandat 262.966 kb on - strandat 263.002 kb on + strandat 263.008 kb on + strandat 263.034 kb on - strand, within EX31_RS18465at 263.057 kb on + strand, within EX31_RS18465at 263.057 kb on + strand, within EX31_RS18465at 263.057 kb on + strand, within EX31_RS18465at 263.058 kb on - strand, within EX31_RS18465at 263.062 kb on + strand, within EX31_RS18465at 263.062 kb on + strand, within EX31_RS18465at 263.062 kb on + strand, within EX31_RS18465at 263.062 kb on + strand, within EX31_RS18465at 263.065 kb on + strand, within EX31_RS18465at 263.065 kb on + strand, within EX31_RS18465at 263.076 kb on + strand, within EX31_RS18465at 263.130 kb on + strand, within EX31_RS18465at 263.130 kb on + strand, within EX31_RS18465at 263.130 kb on + strand, within EX31_RS18465at 263.131 kb on - strand, within EX31_RS18465at 263.132 kb on + strand, within EX31_RS18465at 263.132 kb on + strand, within EX31_RS18465at 263.140 kb on + strand, within EX31_RS18465at 263.140 kb on + strand, within EX31_RS18465at 263.141 kb on - strand, within EX31_RS18465at 263.163 kb on + strand, within EX31_RS18465at 263.245 kb on + strand, within EX31_RS18465at 263.245 kb on + strand, within EX31_RS18465at 263.245 kb on + strand, within EX31_RS18465at 263.246 kb on - strand, within EX31_RS18465at 263.246 kb on - strand, within EX31_RS18465at 263.246 kb on - strand, within EX31_RS18465at 263.314 kb on + strand, within EX31_RS18465at 263.316 kb on + strand, within EX31_RS18465at 263.316 kb on + strand, within EX31_RS18465at 263.332 kb on + strand, within EX31_RS18465at 263.357 kb on + strand, within EX31_RS18465at 263.548 kb on + strand, within EX31_RS18465at 263.548 kb on + strand, within EX31_RS18465at 263.548 kb on + strand, within EX31_RS18465at 263.548 kb on + strand, within EX31_RS18465at 263.549 kb on - strand, within EX31_RS18465at 263.549 kb on - strand, within EX31_RS18465at 263.551 kb on + strand, within EX31_RS18465at 263.552 kb on - strand, within EX31_RS18465at 263.624 kb on - strand, within EX31_RS18465at 263.641 kb on + strand, within EX31_RS18465at 263.659 kb on + strand, within EX31_RS18465at 263.698 kb on + strand, within EX31_RS18465at 263.698 kb on + strand, within EX31_RS18465at 263.699 kb on - strand, within EX31_RS18465at 263.699 kb on - strand, within EX31_RS18465at 263.712 kb on + strand, within EX31_RS18465at 263.764 kb on + strand, within EX31_RS18465at 263.779 kb on + strand, within EX31_RS18465at 263.780 kb on - strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.782 kb on + strand, within EX31_RS18465at 263.785 kb on + strand, within EX31_RS18465at 263.785 kb on + strand, within EX31_RS18465at 263.785 kb on + strand, within EX31_RS18465at 263.785 kb on + strand, within EX31_RS18465at 263.788 kb on + strand, within EX31_RS18465at 263.788 kb on + strand, within EX31_RS18465at 263.793 kb on + strand, within EX31_RS18465at 263.820 kb on + strandat 263.820 kb on + strandat 263.837 kb on + strandat 263.890 kb on + strandat 263.890 kb on + strandat 263.904 kb on + strandat 263.904 kb on + strandat 263.904 kb on + strandat 263.904 kb on + strandat 263.904 kb on + strandat 263.905 kb on - strandat 263.905 kb on - strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.906 kb on + strandat 263.907 kb on - strandat 263.926 kb on + strandat 263.926 kb on + strandat 263.930 kb on + strandat 263.931 kb on - strandat 264.033 kb on + strand, within EX31_RS18470at 264.034 kb on - strand, within EX31_RS18470at 264.111 kb on + strand, within EX31_RS18470at 264.112 kb on - strand, within EX31_RS18470at 264.192 kb on + strand, within EX31_RS18470at 264.226 kb on + strand, within EX31_RS18470at 264.226 kb on + strand, within EX31_RS18470at 264.226 kb on + strand, within EX31_RS18470at 264.507 kb on + strand, within EX31_RS18470at 264.508 kb on - strand, within EX31_RS18470at 264.551 kb on + strand, within EX31_RS18470at 264.551 kb on + strand, within EX31_RS18470at 264.551 kb on + strand, within EX31_RS18470at 264.552 kb on - strand, within EX31_RS18470at 264.575 kb on + strand, within EX31_RS18470at 264.575 kb on + strand, within EX31_RS18470at 264.575 kb on + strand, within EX31_RS18470at 264.575 kb on + strand, within EX31_RS18470at 264.575 kb on + strand, within EX31_RS18470at 264.610 kb on - strand, within EX31_RS18470at 264.654 kb on + strand, within EX31_RS18470at 264.654 kb on + strand, within EX31_RS18470at 264.655 kb on - strand, within EX31_RS18470at 264.671 kb on - strandat 264.737 kb on + strandat 264.741 kb on + strandat 264.755 kb on + strandat 264.755 kb on + strandat 264.756 kb on - strandat 264.797 kb on - strandat 264.811 kb on - strandat 264.837 kb on + strandat 264.838 kb on - strandat 264.874 kb on - strandat 264.874 kb on - strandat 264.874 kb on - strandat 264.880 kb on - strandat 264.960 kb on - strandat 265.013 kb on + strand, within EX31_RS18475at 265.014 kb on - strand, within EX31_RS18475at 265.014 kb on - strand, within EX31_RS18475at 265.014 kb on - strand, within EX31_RS18475at 265.014 kb on - strand, within EX31_RS18475at 265.083 kb on + strand, within EX31_RS18475at 265.083 kb on + strand, within EX31_RS18475at 265.084 kb on - strand, within EX31_RS18475at 265.084 kb on - strand, within EX31_RS18475at 265.084 kb on - strand, within EX31_RS18475at 265.123 kb on - strand, within EX31_RS18475at 265.291 kb on + strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.343 kb on + strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.371 kb on + strand, within EX31_RS18475at 265.371 kb on + strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.374 kb on + strand, within EX31_RS18475at 265.375 kb on - strand, within EX31_RS18475at 265.402 kb on - strand, within EX31_RS18475at 265.461 kb on + strand, within EX31_RS18475at 265.461 kb on + strand, within EX31_RS18475at 265.472 kb on - strand, within EX31_RS18475at 265.472 kb on - strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.526 kb on - strand, within EX31_RS18475at 265.580 kb on + strand, within EX31_RS18475at 265.581 kb on - strand, within EX31_RS18475at 265.581 kb on - strand, within EX31_RS18475at 265.583 kb on + strand, within EX31_RS18475at 265.583 kb on + strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.640 kb on - strand, within EX31_RS18475at 265.723 kb on + strand, within EX31_RS18475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
262,966 - -1.4
262,966 - +0.1
263,002 + -0.2
263,008 + +0.5
263,034 - EX31_RS18465 0.11 -0.0
263,057 + EX31_RS18465 0.14 -0.1
263,057 + EX31_RS18465 0.14 -0.1
263,057 + EX31_RS18465 0.14 -1.5
263,058 - EX31_RS18465 0.14 -0.9
263,062 + EX31_RS18465 0.14 +0.5
263,062 + EX31_RS18465 0.14 +1.3
263,062 + EX31_RS18465 0.14 +0.4
263,062 + EX31_RS18465 0.14 -0.7
263,065 + EX31_RS18465 0.14 +0.1
263,065 + EX31_RS18465 0.14 -0.3
263,076 + EX31_RS18465 0.16 -0.4
263,130 + EX31_RS18465 0.21 -0.3
263,130 + EX31_RS18465 0.21 -0.5
263,130 + EX31_RS18465 0.21 -1.5
263,131 - EX31_RS18465 0.21 +0.5
263,132 + EX31_RS18465 0.21 +0.1
263,132 + EX31_RS18465 0.21 -0.7
263,140 + EX31_RS18465 0.22 -1.4
263,140 + EX31_RS18465 0.22 -0.7
263,141 - EX31_RS18465 0.22 +1.2
263,163 + EX31_RS18465 0.24 +0.7
263,245 + EX31_RS18465 0.33 -0.4
263,245 + EX31_RS18465 0.33 -0.5
263,245 + EX31_RS18465 0.33 +0.3
263,246 - EX31_RS18465 0.33 +0.6
263,246 - EX31_RS18465 0.33 +0.1
263,246 - EX31_RS18465 0.33 -0.2
263,314 + EX31_RS18465 0.40 -1.2
263,316 + EX31_RS18465 0.40 +0.4
263,316 + EX31_RS18465 0.40 +0.2
263,332 + EX31_RS18465 0.42 -1.7
263,357 + EX31_RS18465 0.44 +0.5
263,548 + EX31_RS18465 0.63 -0.1
263,548 + EX31_RS18465 0.63 -0.5
263,548 + EX31_RS18465 0.63 +0.7
263,548 + EX31_RS18465 0.63 +0.0
263,549 - EX31_RS18465 0.64 -0.3
263,549 - EX31_RS18465 0.64 +0.2
263,551 + EX31_RS18465 0.64 +0.0
263,552 - EX31_RS18465 0.64 -0.1
263,624 - EX31_RS18465 0.71 -0.9
263,641 + EX31_RS18465 0.73 +0.6
263,659 + EX31_RS18465 0.75 +0.8
263,698 + EX31_RS18465 0.79 +0.7
263,698 + EX31_RS18465 0.79 -0.7
263,699 - EX31_RS18465 0.79 +1.0
263,699 - EX31_RS18465 0.79 +0.5
263,712 + EX31_RS18465 0.80 +0.2
263,764 + EX31_RS18465 0.85 +0.0
263,779 + EX31_RS18465 0.87 +0.5
263,780 - EX31_RS18465 0.87 -1.9
263,782 + EX31_RS18465 0.87 +0.5
263,782 + EX31_RS18465 0.87 -0.2
263,782 + EX31_RS18465 0.87 -0.1
263,782 + EX31_RS18465 0.87 +0.0
263,782 + EX31_RS18465 0.87 -0.2
263,782 + EX31_RS18465 0.87 +0.3
263,782 + EX31_RS18465 0.87 +0.4
263,785 + EX31_RS18465 0.87 -0.8
263,785 + EX31_RS18465 0.87 +0.3
263,785 + EX31_RS18465 0.87 +0.5
263,785 + EX31_RS18465 0.87 -0.0
263,788 + EX31_RS18465 0.88 +0.0
263,788 + EX31_RS18465 0.88 +0.7
263,793 + EX31_RS18465 0.88 -0.9
263,820 + +0.6
263,820 + +0.2
263,837 + -0.4
263,890 + +1.9
263,890 + +0.1
263,904 + +0.2
263,904 + +0.5
263,904 + -0.4
263,904 + +0.0
263,904 + -1.3
263,905 - -0.5
263,905 - +1.2
263,906 + +0.1
263,906 + -1.7
263,906 + +0.2
263,906 + -0.2
263,906 + -0.2
263,906 + -0.1
263,906 + +1.0
263,906 + +0.5
263,907 - +1.0
263,926 + -0.3
263,926 + -0.0
263,930 + -0.4
263,931 - +0.9
264,033 + EX31_RS18470 0.11 -1.3
264,034 - EX31_RS18470 0.11 +0.1
264,111 + EX31_RS18470 0.20 -0.7
264,112 - EX31_RS18470 0.20 -1.3
264,192 + EX31_RS18470 0.30 -0.2
264,226 + EX31_RS18470 0.35 +1.3
264,226 + EX31_RS18470 0.35 +0.0
264,226 + EX31_RS18470 0.35 -1.1
264,507 + EX31_RS18470 0.70 -0.0
264,508 - EX31_RS18470 0.70 +0.4
264,551 + EX31_RS18470 0.75 -0.7
264,551 + EX31_RS18470 0.75 -1.5
264,551 + EX31_RS18470 0.75 +0.1
264,552 - EX31_RS18470 0.76 -1.3
264,575 + EX31_RS18470 0.78 +0.6
264,575 + EX31_RS18470 0.78 -0.4
264,575 + EX31_RS18470 0.78 -1.5
264,575 + EX31_RS18470 0.78 +0.4
264,575 + EX31_RS18470 0.78 -0.8
264,610 - EX31_RS18470 0.83 +0.6
264,654 + EX31_RS18470 0.88 -0.3
264,654 + EX31_RS18470 0.88 +1.6
264,655 - EX31_RS18470 0.88 -0.5
264,671 - -0.6
264,737 + -0.5
264,741 + -0.1
264,755 + +0.0
264,755 + -0.5
264,756 - +0.0
264,797 - -0.2
264,811 - -0.4
264,837 + -1.2
264,838 - +0.5
264,874 - +0.4
264,874 - -2.2
264,874 - +0.0
264,880 - +0.4
264,960 - +1.6
265,013 + EX31_RS18475 0.14 -0.5
265,014 - EX31_RS18475 0.14 +0.0
265,014 - EX31_RS18475 0.14 -0.1
265,014 - EX31_RS18475 0.14 -0.7
265,014 - EX31_RS18475 0.14 -0.0
265,083 + EX31_RS18475 0.20 +0.4
265,083 + EX31_RS18475 0.20 +1.2
265,084 - EX31_RS18475 0.20 +1.0
265,084 - EX31_RS18475 0.20 -0.6
265,084 - EX31_RS18475 0.20 -1.3
265,123 - EX31_RS18475 0.24 +0.4
265,291 + EX31_RS18475 0.38 -0.6
265,292 - EX31_RS18475 0.38 +1.1
265,292 - EX31_RS18475 0.38 -0.4
265,292 - EX31_RS18475 0.38 +0.1
265,292 - EX31_RS18475 0.38 -0.5
265,292 - EX31_RS18475 0.38 +0.3
265,292 - EX31_RS18475 0.38 +0.1
265,292 - EX31_RS18475 0.38 -0.5
265,292 - EX31_RS18475 0.38 +0.3
265,343 + EX31_RS18475 0.43 -0.5
265,346 - EX31_RS18475 0.43 +0.5
265,346 - EX31_RS18475 0.43 -1.5
265,346 - EX31_RS18475 0.43 -0.0
265,371 + EX31_RS18475 0.45 -0.9
265,371 + EX31_RS18475 0.45 -0.1
265,372 - EX31_RS18475 0.45 -0.2
265,372 - EX31_RS18475 0.45 -0.5
265,372 - EX31_RS18475 0.45 -0.4
265,374 + EX31_RS18475 0.45 -0.6
265,375 - EX31_RS18475 0.46 -0.4
265,402 - EX31_RS18475 0.48 +1.2
265,461 + EX31_RS18475 0.53 +0.7
265,461 + EX31_RS18475 0.53 +0.3
265,472 - EX31_RS18475 0.54 -0.6
265,472 - EX31_RS18475 0.54 +0.9
265,519 + EX31_RS18475 0.58 +0.2
265,519 + EX31_RS18475 0.58 +1.4
265,519 + EX31_RS18475 0.58 -0.9
265,520 - EX31_RS18475 0.58 -0.3
265,520 - EX31_RS18475 0.58 +0.3
265,520 - EX31_RS18475 0.58 +0.3
265,520 - EX31_RS18475 0.58 -0.1
265,526 - EX31_RS18475 0.59 -0.4
265,580 + EX31_RS18475 0.63 -0.8
265,581 - EX31_RS18475 0.64 -1.1
265,581 - EX31_RS18475 0.64 -0.6
265,583 + EX31_RS18475 0.64 -1.0
265,583 + EX31_RS18475 0.64 -0.4
265,584 - EX31_RS18475 0.64 -0.2
265,584 - EX31_RS18475 0.64 +0.5
265,584 - EX31_RS18475 0.64 +0.5
265,584 - EX31_RS18475 0.64 +0.2
265,584 - EX31_RS18475 0.64 +1.0
265,584 - EX31_RS18475 0.64 -1.1
265,584 - EX31_RS18475 0.64 +0.3
265,584 - EX31_RS18475 0.64 +0.4
265,584 - EX31_RS18475 0.64 -0.0
265,584 - EX31_RS18475 0.64 -0.1
265,593 + EX31_RS18475 0.65 +0.6
265,593 + EX31_RS18475 0.65 -0.6
265,593 + EX31_RS18475 0.65 -1.2
265,594 - EX31_RS18475 0.65 +0.4
265,594 - EX31_RS18475 0.65 +0.4
265,594 - EX31_RS18475 0.65 -0.5
265,595 + EX31_RS18475 0.65 +0.5
265,595 + EX31_RS18475 0.65 -0.1
265,595 + EX31_RS18475 0.65 -0.6
265,595 + EX31_RS18475 0.65 -0.2
265,595 + EX31_RS18475 0.65 +0.8
265,595 + EX31_RS18475 0.65 -0.0
265,596 - EX31_RS18475 0.65 +0.8
265,596 - EX31_RS18475 0.65 -0.9
265,596 - EX31_RS18475 0.65 -0.0
265,596 - EX31_RS18475 0.65 +0.1
265,596 - EX31_RS18475 0.65 +2.4
265,596 - EX31_RS18475 0.65 -0.5
265,596 - EX31_RS18475 0.65 -0.4
265,596 - EX31_RS18475 0.65 -0.6
265,596 - EX31_RS18475 0.65 +0.3
265,596 - EX31_RS18475 0.65 -0.5
265,640 - EX31_RS18475 0.69 +0.1
265,723 + EX31_RS18475 0.76 -1.9

Or see this region's nucleotide sequence