Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16395 and EX31_RS16400 overlap by 53 nucleotides EX31_RS16400 and EX31_RS16410 are separated by 545 nucleotides
EX31_RS16395: EX31_RS16395 - MFS transporter, at 29,783 to 31,048
_RS16395
EX31_RS16400: EX31_RS16400 - L-tyrosine/L-tryptophan isonitrile synthase family protein, at 30,996 to 32,744
_RS16400
EX31_RS16410: EX31_RS16410 - recombinase family protein, at 33,290 to 33,931
_RS16410
Position (kb) 30
31
32
33 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 30.008 kb on + strand, within EX31_RS16395 at 30.009 kb on - strand, within EX31_RS16395 at 30.066 kb on + strand, within EX31_RS16395 at 30.066 kb on + strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.114 kb on - strand, within EX31_RS16395 at 30.164 kb on - strand, within EX31_RS16395 at 30.195 kb on + strand, within EX31_RS16395 at 30.195 kb on + strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.199 kb on + strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.203 kb on + strand, within EX31_RS16395 at 30.204 kb on - strand, within EX31_RS16395 at 30.204 kb on - strand, within EX31_RS16395 at 30.206 kb on + strand, within EX31_RS16395 at 30.286 kb on + strand, within EX31_RS16395 at 30.291 kb on - strand, within EX31_RS16395 at 30.291 kb on - strand, within EX31_RS16395 at 30.320 kb on + strand, within EX31_RS16395 at 30.333 kb on - strand, within EX31_RS16395 at 30.333 kb on - strand, within EX31_RS16395 at 30.385 kb on + strand, within EX31_RS16395 at 30.411 kb on + strand, within EX31_RS16395 at 30.474 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.537 kb on - strand, within EX31_RS16395 at 30.537 kb on - strand, within EX31_RS16395 at 30.621 kb on - strand, within EX31_RS16395 at 30.650 kb on + strand, within EX31_RS16395 at 30.650 kb on + strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.660 kb on - strand, within EX31_RS16395 at 30.677 kb on + strand, within EX31_RS16395 at 30.680 kb on + strand, within EX31_RS16395 at 30.681 kb on - strand, within EX31_RS16395 at 30.699 kb on + strand, within EX31_RS16395 at 30.701 kb on + strand, within EX31_RS16395 at 30.701 kb on + strand, within EX31_RS16395 at 30.703 kb on + strand, within EX31_RS16395 at 30.704 kb on - strand, within EX31_RS16395 at 30.708 kb on - strand, within EX31_RS16395 at 30.754 kb on + strand, within EX31_RS16395 at 30.812 kb on - strand, within EX31_RS16395 at 30.830 kb on + strand, within EX31_RS16395 at 30.831 kb on - strand, within EX31_RS16395 at 30.852 kb on - strand, within EX31_RS16395 at 30.861 kb on + strand, within EX31_RS16395 at 30.873 kb on + strand, within EX31_RS16395 at 30.923 kb on - strand at 30.923 kb on - strand at 30.933 kb on + strand at 30.966 kb on + strand at 30.966 kb on + strand at 30.966 kb on + strand at 30.967 kb on - strand at 30.967 kb on - strand at 30.967 kb on - strand at 30.967 kb on - strand at 31.018 kb on - strand at 31.018 kb on - strand at 31.022 kb on + strand at 31.022 kb on + strand at 31.023 kb on - strand at 31.108 kb on + strand at 31.108 kb on + strand at 31.109 kb on - strand at 31.134 kb on + strand at 31.194 kb on + strand, within EX31_RS16400 at 31.216 kb on - strand, within EX31_RS16400 at 31.338 kb on + strand, within EX31_RS16400 at 31.396 kb on + strand, within EX31_RS16400 at 31.426 kb on - strand, within EX31_RS16400 at 31.441 kb on - strand, within EX31_RS16400 at 31.495 kb on - strand, within EX31_RS16400 at 31.496 kb on + strand, within EX31_RS16400 at 31.548 kb on - strand, within EX31_RS16400 at 31.611 kb on + strand, within EX31_RS16400 at 31.713 kb on + strand, within EX31_RS16400 at 31.828 kb on - strand, within EX31_RS16400 at 31.887 kb on + strand, within EX31_RS16400 at 31.887 kb on + strand, within EX31_RS16400 at 32.198 kb on + strand, within EX31_RS16400 at 32.208 kb on + strand, within EX31_RS16400 at 32.223 kb on + strand, within EX31_RS16400 at 32.378 kb on + strand, within EX31_RS16400 at 32.378 kb on + strand, within EX31_RS16400 at 32.470 kb on - strand, within EX31_RS16400 at 32.470 kb on - strand, within EX31_RS16400 at 32.531 kb on + strand, within EX31_RS16400 at 32.559 kb on - strand, within EX31_RS16400 at 32.575 kb on + strand at 32.575 kb on + strand at 32.575 kb on + strand at 32.576 kb on - strand at 32.576 kb on - strand at 32.576 kb on - strand at 32.580 kb on + strand at 32.624 kb on + strand at 32.624 kb on + strand at 32.658 kb on + strand at 32.659 kb on - strand at 32.692 kb on - strand at 32.692 kb on - strand at 32.702 kb on + strand at 32.702 kb on + strand at 32.707 kb on + strand at 32.724 kb on + strand at 32.724 kb on + strand at 32.724 kb on + strand at 32.725 kb on - strand at 32.725 kb on - strand at 32.725 kb on - strand at 32.725 kb on - strand at 32.725 kb on - strand at 32.744 kb on + strand at 32.744 kb on + strand at 32.744 kb on + strand at 32.744 kb on + strand at 32.755 kb on + strand at 32.764 kb on + strand at 32.799 kb on + strand at 32.815 kb on - strand at 32.827 kb on + strand at 32.838 kb on - strand at 32.838 kb on - strand at 32.855 kb on + strand at 32.855 kb on + strand at 32.856 kb on - strand at 32.856 kb on - strand at 32.865 kb on + strand at 32.865 kb on + strand at 32.865 kb on + strand at 32.866 kb on - strand at 32.887 kb on + strand at 32.891 kb on + strand at 32.892 kb on - strand at 32.892 kb on - strand at 32.892 kb on - strand at 32.892 kb on - strand at 32.934 kb on + strand at 32.934 kb on + strand at 32.934 kb on + strand at 32.934 kb on + strand at 32.935 kb on - strand at 32.935 kb on - strand at 32.935 kb on - strand at 32.935 kb on - strand at 32.935 kb on - strand at 32.947 kb on + strand at 33.004 kb on - strand at 33.020 kb on + strand at 33.020 kb on + strand at 33.109 kb on - strand at 33.120 kb on + strand at 33.121 kb on - strand at 33.282 kb on - strand at 33.286 kb on - strand at 33.286 kb on - strand at 33.322 kb on + strand at 33.323 kb on - strand at 33.323 kb on - strand at 33.323 kb on - strand at 33.323 kb on - strand at 33.332 kb on + strand at 33.332 kb on + strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.333 kb on - strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.334 kb on + strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.335 kb on - strand at 33.338 kb on + strand at 33.338 kb on + strand at 33.338 kb on + strand at 33.338 kb on + strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.339 kb on - strand at 33.340 kb on + strand at 33.340 kb on + strand at 33.341 kb on - strand at 33.341 kb on - strand at 33.341 kb on - strand at 33.341 kb on - strand at 33.341 kb on - strand at 33.365 kb on + strand, within EX31_RS16410 at 33.365 kb on + strand, within EX31_RS16410 at 33.366 kb on - strand, within EX31_RS16410 at 33.366 kb on - strand, within EX31_RS16410 at 33.377 kb on - strand, within EX31_RS16410 at 33.377 kb on - strand, within EX31_RS16410 at 33.377 kb on - strand, within EX31_RS16410 at 33.377 kb on - strand, within EX31_RS16410 at 33.421 kb on + strand, within EX31_RS16410 at 33.421 kb on + strand, within EX31_RS16410 at 33.422 kb on - strand, within EX31_RS16410 at 33.478 kb on + strand, within EX31_RS16410 at 33.479 kb on - strand, within EX31_RS16410 at 33.517 kb on - strand, within EX31_RS16410 at 33.533 kb on - strand, within EX31_RS16410 at 33.533 kb on - strand, within EX31_RS16410 at 33.544 kb on + strand, within EX31_RS16410 at 33.544 kb on + strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.545 kb on - strand, within EX31_RS16410 at 33.670 kb on + strand, within EX31_RS16410 at 33.714 kb on - strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.739 kb on + strand, within EX31_RS16410 at 33.740 kb on - strand, within EX31_RS16410 at 33.740 kb on - strand, within EX31_RS16410
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 30,008 + EX31_RS16395 0.18 -0.6 30,009 - EX31_RS16395 0.18 -0.1 30,066 + EX31_RS16395 0.22 +0.4 30,066 + EX31_RS16395 0.22 +0.9 30,067 - EX31_RS16395 0.22 +0.2 30,067 - EX31_RS16395 0.22 -1.0 30,067 - EX31_RS16395 0.22 +1.3 30,114 - EX31_RS16395 0.26 -0.3 30,164 - EX31_RS16395 0.30 -0.8 30,195 + EX31_RS16395 0.33 +0.7 30,195 + EX31_RS16395 0.33 +2.1 30,196 - EX31_RS16395 0.33 -0.8 30,196 - EX31_RS16395 0.33 -1.0 30,196 - EX31_RS16395 0.33 -0.5 30,196 - EX31_RS16395 0.33 -1.7 30,196 - EX31_RS16395 0.33 -0.2 30,196 - EX31_RS16395 0.33 +0.8 30,196 - EX31_RS16395 0.33 -0.3 30,199 + EX31_RS16395 0.33 -1.0 30,200 - EX31_RS16395 0.33 -0.3 30,200 - EX31_RS16395 0.33 +0.6 30,200 - EX31_RS16395 0.33 -0.3 30,203 + EX31_RS16395 0.33 +1.8 30,204 - EX31_RS16395 0.33 +0.4 30,204 - EX31_RS16395 0.33 +1.1 30,206 + EX31_RS16395 0.33 +0.5 30,286 + EX31_RS16395 0.40 +1.3 30,291 - EX31_RS16395 0.40 +0.1 30,291 - EX31_RS16395 0.40 +1.1 30,320 + EX31_RS16395 0.42 -0.2 30,333 - EX31_RS16395 0.43 -0.6 30,333 - EX31_RS16395 0.43 -0.2 30,385 + EX31_RS16395 0.48 +0.6 30,411 + EX31_RS16395 0.50 +0.4 30,474 + EX31_RS16395 0.55 +0.3 30,536 + EX31_RS16395 0.59 +0.3 30,536 + EX31_RS16395 0.59 +0.4 30,536 + EX31_RS16395 0.59 -1.1 30,536 + EX31_RS16395 0.59 -0.4 30,537 - EX31_RS16395 0.60 +0.1 30,537 - EX31_RS16395 0.60 -1.0 30,621 - EX31_RS16395 0.66 -0.5 30,650 + EX31_RS16395 0.68 -0.4 30,650 + EX31_RS16395 0.68 +1.2 30,651 - EX31_RS16395 0.69 -0.4 30,651 - EX31_RS16395 0.69 +0.5 30,651 - EX31_RS16395 0.69 -0.1 30,651 - EX31_RS16395 0.69 -0.9 30,651 - EX31_RS16395 0.69 +0.5 30,660 - EX31_RS16395 0.69 -0.7 30,677 + EX31_RS16395 0.71 +0.5 30,680 + EX31_RS16395 0.71 +0.4 30,681 - EX31_RS16395 0.71 -0.9 30,699 + EX31_RS16395 0.72 -0.2 30,701 + EX31_RS16395 0.73 -0.8 30,701 + EX31_RS16395 0.73 +1.6 30,703 + EX31_RS16395 0.73 -0.0 30,704 - EX31_RS16395 0.73 -0.5 30,708 - EX31_RS16395 0.73 +0.8 30,754 + EX31_RS16395 0.77 +0.3 30,812 - EX31_RS16395 0.81 +0.5 30,830 + EX31_RS16395 0.83 -0.0 30,831 - EX31_RS16395 0.83 -0.2 30,852 - EX31_RS16395 0.84 -0.4 30,861 + EX31_RS16395 0.85 +0.7 30,873 + EX31_RS16395 0.86 -0.1 30,923 - +1.4 30,923 - +0.6 30,933 + +0.6 30,966 + +0.7 30,966 + +1.0 30,966 + -0.7 30,967 - +0.5 30,967 - -0.5 30,967 - -0.4 30,967 - +0.3 31,018 - -0.4 31,018 - -0.4 31,022 + +0.4 31,022 + -2.2 31,023 - +0.4 31,108 + +0.3 31,108 + +1.4 31,109 - -0.5 31,134 + +0.6 31,194 + EX31_RS16400 0.11 -0.5 31,216 - EX31_RS16400 0.13 +1.2 31,338 + EX31_RS16400 0.20 +0.2 31,396 + EX31_RS16400 0.23 -1.0 31,426 - EX31_RS16400 0.25 -0.9 31,441 - EX31_RS16400 0.25 +0.1 31,495 - EX31_RS16400 0.29 +0.1 31,496 + EX31_RS16400 0.29 -2.2 31,548 - EX31_RS16400 0.32 -0.5 31,611 + EX31_RS16400 0.35 -1.3 31,713 + EX31_RS16400 0.41 +0.7 31,828 - EX31_RS16400 0.48 +0.6 31,887 + EX31_RS16400 0.51 +0.4 31,887 + EX31_RS16400 0.51 +0.3 32,198 + EX31_RS16400 0.69 -1.1 32,208 + EX31_RS16400 0.69 -0.7 32,223 + EX31_RS16400 0.70 +0.1 32,378 + EX31_RS16400 0.79 -0.7 32,378 + EX31_RS16400 0.79 +0.1 32,470 - EX31_RS16400 0.84 +0.1 32,470 - EX31_RS16400 0.84 -1.0 32,531 + EX31_RS16400 0.88 -1.3 32,559 - EX31_RS16400 0.89 -0.2 32,575 + -1.6 32,575 + +0.6 32,575 + -0.5 32,576 - -0.7 32,576 - +0.3 32,576 - -0.0 32,580 + -0.2 32,624 + -0.7 32,624 + -0.0 32,658 + -0.6 32,659 - +1.0 32,692 - +0.2 32,692 - -0.4 32,702 + +0.5 32,702 + +0.2 32,707 + +0.6 32,724 + -0.6 32,724 + -1.1 32,724 + -0.7 32,725 - +0.3 32,725 - -0.5 32,725 - -0.3 32,725 - -0.8 32,725 - +0.2 32,744 + -0.0 32,744 + -0.8 32,744 + +0.2 32,744 + -0.1 32,755 + -1.1 32,764 + -0.6 32,799 + +0.5 32,815 - +0.4 32,827 + -0.0 32,838 - -0.2 32,838 - -0.4 32,855 + -0.3 32,855 + -1.1 32,856 - -1.5 32,856 - +0.4 32,865 + +0.0 32,865 + -0.7 32,865 + -0.5 32,866 - -0.5 32,887 + -1.6 32,891 + -1.0 32,892 - -0.2 32,892 - -0.1 32,892 - +0.0 32,892 - -3.8 32,934 + -1.9 32,934 + -2.2 32,934 + -0.2 32,934 + +0.2 32,935 - -1.0 32,935 - +0.4 32,935 - -0.3 32,935 - -0.4 32,935 - +1.0 32,947 + -0.9 33,004 - -0.4 33,020 + +0.5 33,020 + -0.8 33,109 - +0.0 33,120 + -0.4 33,121 - +0.0 33,282 - -0.1 33,286 - +0.4 33,286 - -0.0 33,322 + -0.4 33,323 - +0.8 33,323 - +0.4 33,323 - -1.1 33,323 - -0.3 33,332 + -0.9 33,332 + -1.3 33,333 - -0.2 33,333 - +0.5 33,333 - +0.0 33,333 - -0.3 33,333 - +0.5 33,333 - -1.1 33,334 + -0.3 33,334 + -0.7 33,334 + +2.6 33,334 + -0.6 33,334 + +0.3 33,334 + -0.6 33,334 + -0.3 33,334 + +0.3 33,334 + +0.3 33,334 + +0.2 33,334 + +0.2 33,335 - +0.8 33,335 - -0.1 33,335 - -0.2 33,335 - -0.3 33,335 - +0.2 33,335 - -0.1 33,335 - +0.5 33,335 - -0.3 33,335 - -0.5 33,335 - +0.4 33,335 - +0.4 33,335 - -0.2 33,335 - -0.6 33,335 - -0.5 33,335 - -0.9 33,335 - +0.2 33,335 - -0.3 33,335 - +0.2 33,335 - -0.0 33,335 - +0.4 33,335 - +0.7 33,335 - -0.0 33,335 - -0.5 33,335 - -0.1 33,335 - -0.1 33,338 + -0.0 33,338 + +0.3 33,338 + -0.4 33,338 + +0.3 33,339 - +0.1 33,339 - +0.0 33,339 - -0.1 33,339 - +0.3 33,339 - +0.9 33,339 - +0.2 33,339 - -0.3 33,339 - +0.1 33,339 - -0.1 33,339 - -0.1 33,339 - -0.1 33,339 - -0.5 33,339 - -0.1 33,340 + -1.1 33,340 + -0.6 33,341 - +0.6 33,341 - -0.5 33,341 - +0.6 33,341 - +0.2 33,341 - -0.2 33,365 + EX31_RS16410 0.12 -1.5 33,365 + EX31_RS16410 0.12 -0.7 33,366 - EX31_RS16410 0.12 +0.6 33,366 - EX31_RS16410 0.12 +0.3 33,377 - EX31_RS16410 0.14 +0.5 33,377 - EX31_RS16410 0.14 -0.1 33,377 - EX31_RS16410 0.14 -0.5 33,377 - EX31_RS16410 0.14 -0.2 33,421 + EX31_RS16410 0.20 +0.1 33,421 + EX31_RS16410 0.20 -1.3 33,422 - EX31_RS16410 0.21 -0.4 33,478 + EX31_RS16410 0.29 -0.2 33,479 - EX31_RS16410 0.29 +0.3 33,517 - EX31_RS16410 0.35 +0.3 33,533 - EX31_RS16410 0.38 -0.7 33,533 - EX31_RS16410 0.38 +0.2 33,544 + EX31_RS16410 0.40 -1.3 33,544 + EX31_RS16410 0.40 +0.3 33,545 - EX31_RS16410 0.40 +0.3 33,545 - EX31_RS16410 0.40 +0.1 33,545 - EX31_RS16410 0.40 +0.4 33,545 - EX31_RS16410 0.40 -0.6 33,545 - EX31_RS16410 0.40 -0.3 33,545 - EX31_RS16410 0.40 +0.1 33,545 - EX31_RS16410 0.40 +0.0 33,545 - EX31_RS16410 0.40 +0.1 33,670 + EX31_RS16410 0.59 +0.4 33,714 - EX31_RS16410 0.66 +0.6 33,739 + EX31_RS16410 0.70 +0.6 33,739 + EX31_RS16410 0.70 -0.9 33,739 + EX31_RS16410 0.70 +0.5 33,739 + EX31_RS16410 0.70 +0.2 33,739 + EX31_RS16410 0.70 +1.3 33,739 + EX31_RS16410 0.70 -0.7 33,740 - EX31_RS16410 0.70 -0.3 33,740 - EX31_RS16410 0.70 -1.8
Or see this region's nucleotide sequence