Strain Fitness in Rahnella sp. WP5 around EX31_RS13430

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13420 and EX31_RS13425 are separated by 47 nucleotidesEX31_RS13425 and EX31_RS13430 overlap by 8 nucleotidesEX31_RS13430 and EX31_RS13435 are separated by 365 nucleotides EX31_RS13420: EX31_RS13420 - amidohydrolase, at 118,356 to 119,459 _RS13420 EX31_RS13425: EX31_RS13425 - membrane protein, at 119,507 to 119,974 _RS13425 EX31_RS13430: EX31_RS13430 - hypothetical protein, at 119,967 to 120,647 _RS13430 EX31_RS13435: EX31_RS13435 - M20 family metallopeptidase, at 121,013 to 122,152 _RS13435 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1at 118.972 kb on + strand, within EX31_RS13420at 118.972 kb on + strand, within EX31_RS13420at 118.973 kb on - strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 119.042 kb on + strand, within EX31_RS13420at 119.042 kb on + strand, within EX31_RS13420at 119.138 kb on + strand, within EX31_RS13420at 119.139 kb on - strand, within EX31_RS13420at 119.144 kb on + strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.210 kb on + strand, within EX31_RS13420at 119.211 kb on - strand, within EX31_RS13420at 119.211 kb on - strand, within EX31_RS13420at 119.312 kb on + strand, within EX31_RS13420at 119.379 kb on - strandat 119.380 kb on + strandat 119.380 kb on + strandat 119.380 kb on + strandat 119.380 kb on + strandat 119.380 kb on + strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.381 kb on - strandat 119.427 kb on + strandat 119.427 kb on + strandat 119.428 kb on - strandat 119.438 kb on - strandat 119.447 kb on + strandat 119.448 kb on - strandat 119.448 kb on - strandat 119.539 kb on + strandat 119.553 kb on - strandat 119.622 kb on + strand, within EX31_RS13425at 119.622 kb on + strand, within EX31_RS13425at 119.622 kb on + strand, within EX31_RS13425at 119.622 kb on + strand, within EX31_RS13425at 119.623 kb on - strand, within EX31_RS13425at 119.623 kb on - strand, within EX31_RS13425at 119.623 kb on - strand, within EX31_RS13425at 119.623 kb on - strand, within EX31_RS13425at 119.623 kb on - strand, within EX31_RS13425at 119.668 kb on + strand, within EX31_RS13425at 119.668 kb on + strand, within EX31_RS13425at 119.668 kb on + strand, within EX31_RS13425at 119.668 kb on + strand, within EX31_RS13425at 119.669 kb on - strand, within EX31_RS13425at 119.681 kb on - strand, within EX31_RS13425at 119.681 kb on - strand, within EX31_RS13425at 119.710 kb on + strand, within EX31_RS13425at 119.710 kb on + strand, within EX31_RS13425at 119.710 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.714 kb on + strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.715 kb on - strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.749 kb on + strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.750 kb on - strand, within EX31_RS13425at 119.829 kb on - strand, within EX31_RS13425at 119.862 kb on + strand, within EX31_RS13425at 119.862 kb on + strand, within EX31_RS13425at 119.863 kb on - strand, within EX31_RS13425at 119.879 kb on - strand, within EX31_RS13425at 119.891 kb on - strand, within EX31_RS13425at 119.896 kb on + strand, within EX31_RS13425at 119.902 kb on + strand, within EX31_RS13425at 120.065 kb on + strand, within EX31_RS13430at 120.116 kb on - strand, within EX31_RS13430at 120.291 kb on - strand, within EX31_RS13430at 120.303 kb on + strand, within EX31_RS13430at 120.335 kb on - strand, within EX31_RS13430at 120.346 kb on - strand, within EX31_RS13430at 120.574 kb on + strand, within EX31_RS13430at 120.631 kb on - strandat 120.667 kb on + strandat 121.023 kb on - strandat 121.090 kb on + strandat 121.091 kb on - strandat 121.091 kb on - strandat 121.091 kb on - strandat 121.091 kb on - strandat 121.091 kb on - strandat 121.211 kb on - strand, within EX31_RS13435at 121.391 kb on + strand, within EX31_RS13435at 121.391 kb on + strand, within EX31_RS13435at 121.391 kb on + strand, within EX31_RS13435at 121.429 kb on + strand, within EX31_RS13435at 121.430 kb on - strand, within EX31_RS13435at 121.436 kb on - strand, within EX31_RS13435at 121.506 kb on - strand, within EX31_RS13435at 121.613 kb on - strand, within EX31_RS13435

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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118,972 + EX31_RS13420 0.56 -0.5
118,972 + EX31_RS13420 0.56 -1.2
118,973 - EX31_RS13420 0.56 +0.4
118,975 + EX31_RS13420 0.56 -0.2
118,975 + EX31_RS13420 0.56 +0.6
118,975 + EX31_RS13420 0.56 -0.4
118,975 + EX31_RS13420 0.56 +0.0
118,975 + EX31_RS13420 0.56 +0.4
118,975 + EX31_RS13420 0.56 +0.0
118,975 + EX31_RS13420 0.56 -0.2
118,975 + EX31_RS13420 0.56 -0.5
118,975 + EX31_RS13420 0.56 +0.6
118,976 - EX31_RS13420 0.56 +0.4
118,976 - EX31_RS13420 0.56 +0.2
118,976 - EX31_RS13420 0.56 +0.6
118,976 - EX31_RS13420 0.56 -0.5
118,976 - EX31_RS13420 0.56 -0.8
118,976 - EX31_RS13420 0.56 +0.9
118,976 - EX31_RS13420 0.56 -0.4
118,976 - EX31_RS13420 0.56 +0.9
118,976 - EX31_RS13420 0.56 -0.1
118,976 - EX31_RS13420 0.56 -0.0
118,976 - EX31_RS13420 0.56 -1.0
118,976 - EX31_RS13420 0.56 +0.6
118,976 - EX31_RS13420 0.56 -0.2
118,976 - EX31_RS13420 0.56 +0.6
118,976 - EX31_RS13420 0.56 -0.7
118,976 - EX31_RS13420 0.56 -0.1
119,042 + EX31_RS13420 0.62 -0.2
119,042 + EX31_RS13420 0.62 -0.1
119,138 + EX31_RS13420 0.71 -0.3
119,139 - EX31_RS13420 0.71 +0.2
119,144 + EX31_RS13420 0.71 +0.0
119,145 - EX31_RS13420 0.71 +0.1
119,145 - EX31_RS13420 0.71 +0.7
119,145 - EX31_RS13420 0.71 +0.5
119,145 - EX31_RS13420 0.71 -0.8
119,145 - EX31_RS13420 0.71 +0.0
119,210 + EX31_RS13420 0.77 -0.1
119,211 - EX31_RS13420 0.77 -0.2
119,211 - EX31_RS13420 0.77 -0.2
119,312 + EX31_RS13420 0.87 -0.2
119,379 - -0.3
119,380 + -0.8
119,380 + -1.6
119,380 + -0.2
119,380 + -0.7
119,380 + -0.1
119,381 - +0.3
119,381 - -0.2
119,381 - -1.4
119,381 - +0.2
119,381 - +0.2
119,381 - -0.8
119,381 - -1.6
119,427 + +0.0
119,427 + +0.0
119,428 - -0.1
119,438 - +0.6
119,447 + +0.7
119,448 - +0.2
119,448 - -0.1
119,539 + +0.4
119,553 - +0.1
119,622 + EX31_RS13425 0.25 +0.7
119,622 + EX31_RS13425 0.25 -0.2
119,622 + EX31_RS13425 0.25 +0.1
119,622 + EX31_RS13425 0.25 -1.6
119,623 - EX31_RS13425 0.25 -0.7
119,623 - EX31_RS13425 0.25 -2.3
119,623 - EX31_RS13425 0.25 +0.4
119,623 - EX31_RS13425 0.25 -0.2
119,623 - EX31_RS13425 0.25 -1.0
119,668 + EX31_RS13425 0.34 +0.3
119,668 + EX31_RS13425 0.34 -0.2
119,668 + EX31_RS13425 0.34 -0.1
119,668 + EX31_RS13425 0.34 +0.7
119,669 - EX31_RS13425 0.35 +0.3
119,681 - EX31_RS13425 0.37 -0.2
119,681 - EX31_RS13425 0.37 +0.0
119,710 + EX31_RS13425 0.43 -0.0
119,710 + EX31_RS13425 0.43 -0.6
119,710 + EX31_RS13425 0.43 -0.8
119,714 + EX31_RS13425 0.44 +0.5
119,714 + EX31_RS13425 0.44 -0.6
119,714 + EX31_RS13425 0.44 +0.2
119,714 + EX31_RS13425 0.44 +0.7
119,714 + EX31_RS13425 0.44 +0.4
119,714 + EX31_RS13425 0.44 -1.2
119,714 + EX31_RS13425 0.44 -0.3
119,714 + EX31_RS13425 0.44 -0.1
119,714 + EX31_RS13425 0.44 +0.3
119,714 + EX31_RS13425 0.44 +0.1
119,715 - EX31_RS13425 0.44 -0.2
119,715 - EX31_RS13425 0.44 +0.3
119,715 - EX31_RS13425 0.44 -0.4
119,715 - EX31_RS13425 0.44 -0.3
119,715 - EX31_RS13425 0.44 +0.5
119,715 - EX31_RS13425 0.44 +0.1
119,715 - EX31_RS13425 0.44 -0.3
119,715 - EX31_RS13425 0.44 +0.1
119,715 - EX31_RS13425 0.44 +0.3
119,715 - EX31_RS13425 0.44 -0.6
119,715 - EX31_RS13425 0.44 -1.1
119,715 - EX31_RS13425 0.44 +0.5
119,715 - EX31_RS13425 0.44 -1.5
119,715 - EX31_RS13425 0.44 +0.7
119,749 + EX31_RS13425 0.52 -0.7
119,749 + EX31_RS13425 0.52 +0.1
119,749 + EX31_RS13425 0.52 +0.3
119,749 + EX31_RS13425 0.52 +0.2
119,749 + EX31_RS13425 0.52 +1.2
119,749 + EX31_RS13425 0.52 -0.4
119,749 + EX31_RS13425 0.52 -0.7
119,749 + EX31_RS13425 0.52 +0.2
119,749 + EX31_RS13425 0.52 -0.3
119,749 + EX31_RS13425 0.52 +0.6
119,749 + EX31_RS13425 0.52 +1.4
119,749 + EX31_RS13425 0.52 +0.2
119,749 + EX31_RS13425 0.52 -0.4
119,749 + EX31_RS13425 0.52 +0.5
119,749 + EX31_RS13425 0.52 -0.2
119,749 + EX31_RS13425 0.52 -0.5
119,750 - EX31_RS13425 0.52 -0.0
119,750 - EX31_RS13425 0.52 -1.0
119,750 - EX31_RS13425 0.52 -0.4
119,750 - EX31_RS13425 0.52 -0.3
119,750 - EX31_RS13425 0.52 +0.1
119,750 - EX31_RS13425 0.52 -0.2
119,750 - EX31_RS13425 0.52 +0.6
119,750 - EX31_RS13425 0.52 -0.2
119,750 - EX31_RS13425 0.52 +0.8
119,750 - EX31_RS13425 0.52 +0.7
119,750 - EX31_RS13425 0.52 +0.5
119,750 - EX31_RS13425 0.52 -0.1
119,750 - EX31_RS13425 0.52 +0.2
119,750 - EX31_RS13425 0.52 +0.4
119,750 - EX31_RS13425 0.52 -0.5
119,750 - EX31_RS13425 0.52 +0.7
119,750 - EX31_RS13425 0.52 +0.7
119,750 - EX31_RS13425 0.52 -0.6
119,829 - EX31_RS13425 0.69 -0.6
119,862 + EX31_RS13425 0.76 +0.9
119,862 + EX31_RS13425 0.76 +0.3
119,863 - EX31_RS13425 0.76 -1.0
119,879 - EX31_RS13425 0.79 -0.0
119,891 - EX31_RS13425 0.82 -0.5
119,896 + EX31_RS13425 0.83 +0.8
119,902 + EX31_RS13425 0.84 -0.0
120,065 + EX31_RS13430 0.14 -0.9
120,116 - EX31_RS13430 0.22 -0.7
120,291 - EX31_RS13430 0.48 +0.0
120,303 + EX31_RS13430 0.49 -0.6
120,335 - EX31_RS13430 0.54 -0.2
120,346 - EX31_RS13430 0.56 -0.6
120,574 + EX31_RS13430 0.89 -0.1
120,631 - -0.3
120,667 + +0.6
121,023 - +1.1
121,090 + +0.2
121,091 - -0.2
121,091 - -0.5
121,091 - -0.4
121,091 - +0.5
121,091 - -0.7
121,211 - EX31_RS13435 0.17 +0.4
121,391 + EX31_RS13435 0.33 -0.4
121,391 + EX31_RS13435 0.33 -0.1
121,391 + EX31_RS13435 0.33 -0.2
121,429 + EX31_RS13435 0.36 +0.7
121,430 - EX31_RS13435 0.37 +0.3
121,436 - EX31_RS13435 0.37 +0.0
121,506 - EX31_RS13435 0.43 +0.3
121,613 - EX31_RS13435 0.53 +0.3

Or see this region's nucleotide sequence