Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12010 and EX31_RS12015 are separated by 610 nucleotides EX31_RS12015 and EX31_RS12020 are separated by 300 nucleotides
EX31_RS12010: EX31_RS12010 - cysteine protease, at 65,962 to 66,651
_RS12010
EX31_RS12015: EX31_RS12015 - metallophosphoesterase, at 67,262 to 68,845
_RS12015
EX31_RS12020: EX31_RS12020 - FAD-dependent urate hydroxylase HpxO, at 69,146 to 70,303
_RS12020
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 66.467 kb on + strand, within EX31_RS12010 at 66.467 kb on + strand, within EX31_RS12010 at 66.467 kb on + strand, within EX31_RS12010 at 66.547 kb on - strand, within EX31_RS12010 at 66.609 kb on + strand at 66.716 kb on + strand at 66.716 kb on + strand at 66.865 kb on + strand at 66.866 kb on - strand at 66.890 kb on - strand at 66.935 kb on + strand at 66.994 kb on - strand at 66.994 kb on - strand at 67.048 kb on + strand at 67.048 kb on + strand at 67.049 kb on - strand at 67.050 kb on + strand at 67.050 kb on + strand at 67.051 kb on - strand at 67.051 kb on - strand at 67.051 kb on - strand at 67.051 kb on - strand at 67.062 kb on + strand at 67.062 kb on + strand at 67.134 kb on + strand at 67.135 kb on - strand at 67.135 kb on - strand at 67.138 kb on + strand at 67.138 kb on + strand at 67.160 kb on + strand at 67.160 kb on + strand at 67.223 kb on + strand at 67.223 kb on + strand at 67.224 kb on - strand at 67.272 kb on + strand at 67.273 kb on - strand at 67.273 kb on - strand at 67.279 kb on + strand at 67.280 kb on - strand at 67.301 kb on - strand at 67.301 kb on - strand at 67.306 kb on + strand at 67.306 kb on + strand at 67.306 kb on + strand at 67.306 kb on + strand at 67.307 kb on - strand at 67.307 kb on - strand at 67.341 kb on - strand at 67.350 kb on + strand at 67.350 kb on + strand at 67.351 kb on - strand at 67.351 kb on - strand at 67.351 kb on - strand at 67.351 kb on - strand at 67.484 kb on + strand, within EX31_RS12015 at 67.484 kb on + strand, within EX31_RS12015 at 67.484 kb on + strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.485 kb on - strand, within EX31_RS12015 at 67.539 kb on + strand, within EX31_RS12015 at 67.539 kb on + strand, within EX31_RS12015 at 67.539 kb on + strand, within EX31_RS12015 at 67.595 kb on - strand, within EX31_RS12015 at 67.674 kb on - strand, within EX31_RS12015 at 67.674 kb on - strand, within EX31_RS12015 at 67.677 kb on - strand, within EX31_RS12015 at 67.684 kb on + strand, within EX31_RS12015 at 67.714 kb on + strand, within EX31_RS12015 at 67.715 kb on - strand, within EX31_RS12015 at 67.715 kb on - strand, within EX31_RS12015 at 67.720 kb on + strand, within EX31_RS12015 at 67.721 kb on - strand, within EX31_RS12015 at 67.721 kb on - strand, within EX31_RS12015 at 67.721 kb on - strand, within EX31_RS12015 at 67.721 kb on - strand, within EX31_RS12015 at 67.727 kb on + strand, within EX31_RS12015 at 67.727 kb on + strand, within EX31_RS12015 at 67.729 kb on + strand, within EX31_RS12015 at 67.729 kb on + strand, within EX31_RS12015 at 67.730 kb on - strand, within EX31_RS12015 at 67.730 kb on - strand, within EX31_RS12015 at 67.730 kb on - strand, within EX31_RS12015 at 67.730 kb on - strand, within EX31_RS12015 at 67.750 kb on + strand, within EX31_RS12015 at 67.750 kb on + strand, within EX31_RS12015 at 67.751 kb on - strand, within EX31_RS12015 at 67.892 kb on - strand, within EX31_RS12015 at 67.929 kb on - strand, within EX31_RS12015 at 67.981 kb on + strand, within EX31_RS12015 at 68.005 kb on + strand, within EX31_RS12015 at 68.011 kb on + strand, within EX31_RS12015 at 68.060 kb on - strand, within EX31_RS12015 at 68.084 kb on + strand, within EX31_RS12015 at 68.084 kb on + strand, within EX31_RS12015 at 68.084 kb on + strand, within EX31_RS12015 at 68.084 kb on + strand, within EX31_RS12015 at 68.084 kb on + strand, within EX31_RS12015 at 68.085 kb on - strand, within EX31_RS12015 at 68.141 kb on - strand, within EX31_RS12015 at 68.143 kb on + strand, within EX31_RS12015 at 68.209 kb on + strand, within EX31_RS12015 at 68.209 kb on + strand, within EX31_RS12015 at 68.247 kb on + strand, within EX31_RS12015 at 68.263 kb on - strand, within EX31_RS12015 at 68.269 kb on + strand, within EX31_RS12015 at 68.270 kb on - strand, within EX31_RS12015 at 68.280 kb on + strand, within EX31_RS12015 at 68.281 kb on - strand, within EX31_RS12015 at 68.281 kb on - strand, within EX31_RS12015 at 68.335 kb on + strand, within EX31_RS12015 at 68.335 kb on + strand, within EX31_RS12015 at 68.336 kb on - strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.337 kb on + strand, within EX31_RS12015 at 68.338 kb on - strand, within EX31_RS12015 at 68.386 kb on + strand, within EX31_RS12015 at 68.386 kb on + strand, within EX31_RS12015 at 68.448 kb on - strand, within EX31_RS12015 at 68.472 kb on - strand, within EX31_RS12015 at 68.473 kb on + strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.474 kb on - strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.621 kb on + strand, within EX31_RS12015 at 68.622 kb on - strand, within EX31_RS12015 at 68.622 kb on - strand, within EX31_RS12015 at 68.624 kb on - strand, within EX31_RS12015 at 68.635 kb on + strand, within EX31_RS12015 at 68.734 kb on - strand at 68.756 kb on + strand at 68.757 kb on - strand at 68.757 kb on - strand at 68.793 kb on + strand at 68.793 kb on + strand at 68.794 kb on - strand at 68.843 kb on + strand at 68.844 kb on - strand at 68.873 kb on + strand at 68.873 kb on + strand at 68.873 kb on + strand at 68.874 kb on - strand at 68.907 kb on + strand at 68.920 kb on + strand at 68.920 kb on + strand at 68.921 kb on - strand at 68.983 kb on + strand at 68.984 kb on - strand at 68.984 kb on - strand at 68.984 kb on - strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 68.986 kb on + strand at 69.069 kb on + strand at 69.069 kb on + strand at 69.069 kb on + strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.070 kb on - strand at 69.071 kb on + strand at 69.072 kb on - strand at 69.072 kb on - strand at 69.072 kb on - strand at 69.145 kb on + strand at 69.145 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.230 kb on + strand at 69.231 kb on - strand at 69.231 kb on - strand at 69.231 kb on - strand at 69.292 kb on - strand, within EX31_RS12020 at 69.305 kb on + strand, within EX31_RS12020 at 69.306 kb on - strand, within EX31_RS12020 at 69.306 kb on - strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.362 kb on + strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.363 kb on - strand, within EX31_RS12020 at 69.441 kb on - strand, within EX31_RS12020 at 69.441 kb on - strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.485 kb on + strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.486 kb on - strand, within EX31_RS12020 at 69.671 kb on + strand, within EX31_RS12020 at 69.676 kb on + strand, within EX31_RS12020 at 69.677 kb on - strand, within EX31_RS12020 at 69.791 kb on + strand, within EX31_RS12020 at 69.792 kb on - strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.841 kb on + strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020 at 69.842 kb on - strand, within EX31_RS12020
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 66,467 + EX31_RS12010 0.73 -0.0 66,467 + EX31_RS12010 0.73 +0.3 66,467 + EX31_RS12010 0.73 -0.7 66,547 - EX31_RS12010 0.85 +0.4 66,609 + -1.4 66,716 + +0.1 66,716 + +0.6 66,865 + +0.5 66,866 - -0.0 66,890 - -0.3 66,935 + +0.0 66,994 - +0.0 66,994 - -0.8 67,048 + -3.5 67,048 + -0.7 67,049 - -0.5 67,050 + -0.3 67,050 + +1.0 67,051 - -0.4 67,051 - +0.9 67,051 - -0.1 67,051 - +0.4 67,062 + +0.5 67,062 + +0.8 67,134 + +0.5 67,135 - -0.5 67,135 - -0.5 67,138 + +0.4 67,138 + -0.0 67,160 + -0.2 67,160 + -1.5 67,223 + -0.2 67,223 + -1.9 67,224 - -1.4 67,272 + -0.3 67,273 - -0.3 67,273 - -0.5 67,279 + -0.7 67,280 - -0.8 67,301 - +0.7 67,301 - +0.3 67,306 + -0.4 67,306 + +0.0 67,306 + -0.4 67,306 + -0.5 67,307 - -1.2 67,307 - -0.9 67,341 - +1.1 67,350 + -0.0 67,350 + +0.2 67,351 - +0.4 67,351 - +1.0 67,351 - +0.0 67,351 - +0.9 67,484 + EX31_RS12015 0.14 -0.4 67,484 + EX31_RS12015 0.14 +0.0 67,484 + EX31_RS12015 0.14 +0.3 67,485 - EX31_RS12015 0.14 -1.1 67,485 - EX31_RS12015 0.14 +1.4 67,485 - EX31_RS12015 0.14 +0.1 67,485 - EX31_RS12015 0.14 +0.1 67,485 - EX31_RS12015 0.14 -1.5 67,485 - EX31_RS12015 0.14 +0.2 67,539 + EX31_RS12015 0.17 +0.5 67,539 + EX31_RS12015 0.17 -0.4 67,539 + EX31_RS12015 0.17 -0.1 67,595 - EX31_RS12015 0.21 +0.3 67,674 - EX31_RS12015 0.26 -0.2 67,674 - EX31_RS12015 0.26 +0.1 67,677 - EX31_RS12015 0.26 -0.2 67,684 + EX31_RS12015 0.27 -0.1 67,714 + EX31_RS12015 0.29 -0.2 67,715 - EX31_RS12015 0.29 +0.2 67,715 - EX31_RS12015 0.29 -0.5 67,720 + EX31_RS12015 0.29 -0.0 67,721 - EX31_RS12015 0.29 -0.4 67,721 - EX31_RS12015 0.29 +0.2 67,721 - EX31_RS12015 0.29 +1.1 67,721 - EX31_RS12015 0.29 +0.4 67,727 + EX31_RS12015 0.29 +0.0 67,727 + EX31_RS12015 0.29 +0.7 67,729 + EX31_RS12015 0.29 +0.5 67,729 + EX31_RS12015 0.29 +1.4 67,730 - EX31_RS12015 0.30 -0.3 67,730 - EX31_RS12015 0.30 +1.3 67,730 - EX31_RS12015 0.30 +1.0 67,730 - EX31_RS12015 0.30 -1.4 67,750 + EX31_RS12015 0.31 -1.8 67,750 + EX31_RS12015 0.31 +0.6 67,751 - EX31_RS12015 0.31 -0.1 67,892 - EX31_RS12015 0.40 -0.5 67,929 - EX31_RS12015 0.42 +0.2 67,981 + EX31_RS12015 0.45 -0.0 68,005 + EX31_RS12015 0.47 +0.1 68,011 + EX31_RS12015 0.47 +0.9 68,060 - EX31_RS12015 0.50 -0.0 68,084 + EX31_RS12015 0.52 +1.6 68,084 + EX31_RS12015 0.52 +0.4 68,084 + EX31_RS12015 0.52 +0.2 68,084 + EX31_RS12015 0.52 +0.1 68,084 + EX31_RS12015 0.52 +0.1 68,085 - EX31_RS12015 0.52 +0.4 68,141 - EX31_RS12015 0.55 +0.3 68,143 + EX31_RS12015 0.56 -0.2 68,209 + EX31_RS12015 0.60 -0.1 68,209 + EX31_RS12015 0.60 -1.1 68,247 + EX31_RS12015 0.62 +0.4 68,263 - EX31_RS12015 0.63 -0.2 68,269 + EX31_RS12015 0.64 -0.0 68,270 - EX31_RS12015 0.64 -0.7 68,280 + EX31_RS12015 0.64 +1.4 68,281 - EX31_RS12015 0.64 -0.8 68,281 - EX31_RS12015 0.64 -0.8 68,335 + EX31_RS12015 0.68 +0.1 68,335 + EX31_RS12015 0.68 -0.2 68,336 - EX31_RS12015 0.68 +0.7 68,337 + EX31_RS12015 0.68 +0.7 68,337 + EX31_RS12015 0.68 +0.4 68,337 + EX31_RS12015 0.68 +0.6 68,337 + EX31_RS12015 0.68 +0.1 68,338 - EX31_RS12015 0.68 -0.7 68,386 + EX31_RS12015 0.71 -0.2 68,386 + EX31_RS12015 0.71 -0.0 68,448 - EX31_RS12015 0.75 +0.8 68,472 - EX31_RS12015 0.76 -0.0 68,473 + EX31_RS12015 0.76 +0.2 68,474 - EX31_RS12015 0.77 -0.1 68,474 - EX31_RS12015 0.77 +0.0 68,474 - EX31_RS12015 0.77 -0.4 68,621 + EX31_RS12015 0.86 +0.5 68,621 + EX31_RS12015 0.86 +0.3 68,621 + EX31_RS12015 0.86 -0.5 68,622 - EX31_RS12015 0.86 -0.1 68,622 - EX31_RS12015 0.86 +0.3 68,624 - EX31_RS12015 0.86 -0.4 68,635 + EX31_RS12015 0.87 -0.1 68,734 - -0.6 68,756 + +0.2 68,757 - -0.0 68,757 - +0.2 68,793 + +0.4 68,793 + -0.1 68,794 - -0.6 68,843 + +0.6 68,844 - -1.0 68,873 + +0.1 68,873 + +0.5 68,873 + +0.1 68,874 - -1.5 68,907 + -0.0 68,920 + +0.5 68,920 + +1.1 68,921 - -1.1 68,983 + -2.1 68,984 - +0.4 68,984 - -0.2 68,984 - -0.4 68,986 + -0.1 68,986 + -0.6 68,986 + +0.9 68,986 + +0.3 68,986 + -0.1 68,986 + -0.2 69,069 + +0.6 69,069 + +0.2 69,069 + +0.1 69,070 - -0.7 69,070 - -0.3 69,070 - -0.4 69,070 - -0.1 69,070 - -0.3 69,071 + -1.3 69,072 - -0.0 69,072 - -0.2 69,072 - -0.4 69,145 + -0.2 69,145 + -0.1 69,230 + -0.5 69,230 + -0.7 69,230 + -0.1 69,230 + -0.7 69,230 + +0.4 69,230 + -0.9 69,231 - -0.1 69,231 - +0.1 69,231 - +1.0 69,292 - EX31_RS12020 0.13 +0.1 69,305 + EX31_RS12020 0.14 +0.0 69,306 - EX31_RS12020 0.14 -0.3 69,306 - EX31_RS12020 0.14 -0.5 69,362 + EX31_RS12020 0.19 -0.5 69,362 + EX31_RS12020 0.19 -0.3 69,362 + EX31_RS12020 0.19 +0.1 69,363 - EX31_RS12020 0.19 -0.1 69,363 - EX31_RS12020 0.19 +0.5 69,363 - EX31_RS12020 0.19 +0.3 69,441 - EX31_RS12020 0.25 +0.5 69,441 - EX31_RS12020 0.25 +0.0 69,485 + EX31_RS12020 0.29 -0.3 69,485 + EX31_RS12020 0.29 +0.7 69,485 + EX31_RS12020 0.29 +0.3 69,485 + EX31_RS12020 0.29 +0.2 69,486 - EX31_RS12020 0.29 +0.7 69,486 - EX31_RS12020 0.29 -1.3 69,671 + EX31_RS12020 0.45 +0.4 69,676 + EX31_RS12020 0.46 +0.0 69,677 - EX31_RS12020 0.46 +0.5 69,791 + EX31_RS12020 0.56 +0.5 69,792 - EX31_RS12020 0.56 +0.4 69,841 + EX31_RS12020 0.60 -0.1 69,841 + EX31_RS12020 0.60 -1.4 69,842 - EX31_RS12020 0.60 -0.1 69,842 - EX31_RS12020 0.60 +0.6
Or see this region's nucleotide sequence