Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09605 and EX31_RS09610 are separated by 84 nucleotides EX31_RS09610 and EX31_RS09615 are separated by 67 nucleotides EX31_RS09615 and EX31_RS09620 overlap by 4 nucleotides EX31_RS09620 and EX31_RS09625 are separated by 12 nucleotides
EX31_RS09605: EX31_RS09605 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 123,370 to 124,500
_RS09605
EX31_RS09610: EX31_RS09610 - YbjO family protein, at 124,585 to 125,031
_RS09610
EX31_RS09615: EX31_RS09615 - putrescine ABC transporter permease PotI, at 125,099 to 125,944
_RS09615
EX31_RS09620: EX31_RS09620 - putrescine ABC transporter permease PotH, at 125,941 to 126,894
_RS09620
EX31_RS09625: EX31_RS09625 - putrescine ABC transporter ATP-binding subunit PotG, at 126,907 to 128,040
_RS09625
Position (kb)
125
126 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 124.189 kb on - strand, within EX31_RS09605 at 124.289 kb on - strand, within EX31_RS09605 at 124.289 kb on - strand, within EX31_RS09605 at 124.330 kb on - strand, within EX31_RS09605 at 124.436 kb on - strand at 124.439 kb on + strand at 124.484 kb on + strand at 124.484 kb on + strand at 124.485 kb on - strand at 124.575 kb on + strand at 124.575 kb on + strand at 124.576 kb on - strand at 124.576 kb on - strand at 124.576 kb on - strand at 124.576 kb on - strand at 124.587 kb on - strand at 124.628 kb on + strand at 124.628 kb on + strand at 124.628 kb on + strand at 124.628 kb on + strand at 124.629 kb on - strand at 124.629 kb on - strand at 124.629 kb on - strand at 124.708 kb on - strand, within EX31_RS09610 at 124.720 kb on - strand, within EX31_RS09610 at 124.757 kb on + strand, within EX31_RS09610 at 124.758 kb on - strand, within EX31_RS09610 at 124.758 kb on - strand, within EX31_RS09610 at 124.826 kb on + strand, within EX31_RS09610 at 124.827 kb on - strand, within EX31_RS09610 at 124.951 kb on + strand, within EX31_RS09610 at 124.952 kb on - strand, within EX31_RS09610 at 124.952 kb on - strand, within EX31_RS09610 at 124.952 kb on - strand, within EX31_RS09610 at 124.952 kb on - strand, within EX31_RS09610 at 125.016 kb on + strand at 125.032 kb on - strand at 125.032 kb on - strand at 125.155 kb on + strand at 125.156 kb on - strand at 125.329 kb on + strand, within EX31_RS09615 at 125.380 kb on + strand, within EX31_RS09615 at 125.383 kb on + strand, within EX31_RS09615 at 125.383 kb on + strand, within EX31_RS09615 at 125.383 kb on + strand, within EX31_RS09615 at 125.384 kb on - strand, within EX31_RS09615 at 125.484 kb on + strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.485 kb on - strand, within EX31_RS09615 at 125.633 kb on - strand, within EX31_RS09615 at 125.788 kb on + strand, within EX31_RS09615 at 125.790 kb on + strand, within EX31_RS09615 at 125.791 kb on - strand, within EX31_RS09615 at 125.791 kb on - strand, within EX31_RS09615 at 125.791 kb on - strand, within EX31_RS09615 at 125.801 kb on - strand, within EX31_RS09615 at 125.847 kb on + strand, within EX31_RS09615 at 125.848 kb on - strand, within EX31_RS09615 at 125.852 kb on - strand, within EX31_RS09615 at 125.902 kb on + strand at 125.903 kb on - strand at 125.991 kb on + strand at 126.090 kb on + strand, within EX31_RS09620 at 126.091 kb on - strand, within EX31_RS09620 at 126.093 kb on + strand, within EX31_RS09620 at 126.094 kb on - strand, within EX31_RS09620 at 126.128 kb on + strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.301 kb on - strand, within EX31_RS09620 at 126.311 kb on + strand, within EX31_RS09620 at 126.312 kb on - strand, within EX31_RS09620 at 126.312 kb on - strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.333 kb on - strand, within EX31_RS09620 at 126.333 kb on - strand, within EX31_RS09620 at 126.395 kb on - strand, within EX31_RS09620 at 126.399 kb on + strand, within EX31_RS09620 at 126.406 kb on + strand, within EX31_RS09620 at 126.609 kb on + strand, within EX31_RS09620 at 126.611 kb on + strand, within EX31_RS09620 at 126.612 kb on - strand, within EX31_RS09620 at 126.638 kb on + strand, within EX31_RS09620 at 126.639 kb on - strand, within EX31_RS09620 at 126.696 kb on + strand, within EX31_RS09620 at 126.697 kb on - strand, within EX31_RS09620
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 124,189 - EX31_RS09605 0.72 +0.8 124,289 - EX31_RS09605 0.81 -0.7 124,289 - EX31_RS09605 0.81 +0.2 124,330 - EX31_RS09605 0.85 +0.3 124,436 - +0.5 124,439 + +0.1 124,484 + -1.2 124,484 + +0.9 124,485 - -0.2 124,575 + +0.0 124,575 + +0.3 124,576 - +2.0 124,576 - +0.2 124,576 - -1.2 124,576 - -1.0 124,587 - +0.8 124,628 + +0.0 124,628 + +0.8 124,628 + -1.0 124,628 + -1.0 124,629 - -1.6 124,629 - +0.7 124,629 - -0.6 124,708 - EX31_RS09610 0.28 -0.5 124,720 - EX31_RS09610 0.30 -0.2 124,757 + EX31_RS09610 0.38 +0.2 124,758 - EX31_RS09610 0.39 -1.8 124,758 - EX31_RS09610 0.39 -1.3 124,826 + EX31_RS09610 0.54 -0.2 124,827 - EX31_RS09610 0.54 +0.8 124,951 + EX31_RS09610 0.82 +0.5 124,952 - EX31_RS09610 0.82 +0.2 124,952 - EX31_RS09610 0.82 +1.0 124,952 - EX31_RS09610 0.82 -0.4 124,952 - EX31_RS09610 0.82 +0.1 125,016 + -1.9 125,032 - +0.5 125,032 - -0.2 125,155 + +0.6 125,156 - +0.8 125,329 + EX31_RS09615 0.27 +1.2 125,380 + EX31_RS09615 0.33 +0.3 125,383 + EX31_RS09615 0.34 -0.5 125,383 + EX31_RS09615 0.34 -2.0 125,383 + EX31_RS09615 0.34 -0.4 125,384 - EX31_RS09615 0.34 -2.2 125,484 + EX31_RS09615 0.46 -0.2 125,485 - EX31_RS09615 0.46 -0.4 125,485 - EX31_RS09615 0.46 -0.9 125,485 - EX31_RS09615 0.46 -0.4 125,485 - EX31_RS09615 0.46 -0.6 125,485 - EX31_RS09615 0.46 +0.6 125,485 - EX31_RS09615 0.46 -0.4 125,485 - EX31_RS09615 0.46 +0.7 125,485 - EX31_RS09615 0.46 -0.7 125,485 - EX31_RS09615 0.46 +0.4 125,485 - EX31_RS09615 0.46 -1.1 125,633 - EX31_RS09615 0.63 -0.8 125,788 + EX31_RS09615 0.81 +1.9 125,790 + EX31_RS09615 0.82 -0.9 125,791 - EX31_RS09615 0.82 -0.1 125,791 - EX31_RS09615 0.82 -0.3 125,791 - EX31_RS09615 0.82 -0.5 125,801 - EX31_RS09615 0.83 -0.7 125,847 + EX31_RS09615 0.88 -0.8 125,848 - EX31_RS09615 0.89 -0.1 125,852 - EX31_RS09615 0.89 +0.2 125,902 + -0.7 125,903 - -0.2 125,991 + +0.3 126,090 + EX31_RS09620 0.16 -1.9 126,091 - EX31_RS09620 0.16 -0.0 126,093 + EX31_RS09620 0.16 -0.3 126,094 - EX31_RS09620 0.16 -0.9 126,128 + EX31_RS09620 0.20 +0.8 126,129 - EX31_RS09620 0.20 -0.1 126,129 - EX31_RS09620 0.20 -1.3 126,129 - EX31_RS09620 0.20 +0.1 126,301 - EX31_RS09620 0.38 +0.6 126,311 + EX31_RS09620 0.39 +0.0 126,312 - EX31_RS09620 0.39 -0.2 126,312 - EX31_RS09620 0.39 -0.2 126,332 + EX31_RS09620 0.41 -0.9 126,332 + EX31_RS09620 0.41 -0.2 126,332 + EX31_RS09620 0.41 +1.3 126,333 - EX31_RS09620 0.41 +0.8 126,333 - EX31_RS09620 0.41 +0.1 126,395 - EX31_RS09620 0.48 +0.4 126,399 + EX31_RS09620 0.48 -0.7 126,406 + EX31_RS09620 0.49 -0.9 126,609 + EX31_RS09620 0.70 -0.6 126,611 + EX31_RS09620 0.70 +0.4 126,612 - EX31_RS09620 0.70 -0.1 126,638 + EX31_RS09620 0.73 -0.3 126,639 - EX31_RS09620 0.73 +0.1 126,696 + EX31_RS09620 0.79 -1.8 126,697 - EX31_RS09620 0.79 -0.1
Or see this region's nucleotide sequence