Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06790 and EX31_RS06795 are separated by 16 nucleotides EX31_RS06795 and EX31_RS06800 overlap by 1 nucleotides EX31_RS06800 and EX31_RS06805 overlap by 4 nucleotides
EX31_RS06790: EX31_RS06790 - histidinol dehydrogenase, at 145,231 to 146,571
_RS06790
EX31_RS06795: EX31_RS06795 - ABC transporter ATP-binding protein, at 146,588 to 147,358
_RS06795
EX31_RS06800: EX31_RS06800 - ABC transporter permease, at 147,358 to 148,167
_RS06800
EX31_RS06805: EX31_RS06805 - ABC transporter substrate-binding protein, at 148,164 to 149,171
_RS06805
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.370 kb on + strand, within EX31_RS06790 at 146.370 kb on + strand, within EX31_RS06790 at 146.370 kb on + strand, within EX31_RS06790 at 146.760 kb on + strand, within EX31_RS06795 at 146.761 kb on - strand, within EX31_RS06795 at 146.761 kb on - strand, within EX31_RS06795 at 146.763 kb on - strand, within EX31_RS06795 at 146.831 kb on + strand, within EX31_RS06795 at 147.105 kb on + strand, within EX31_RS06795 at 147.106 kb on - strand, within EX31_RS06795 at 147.212 kb on + strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.435 kb on + strand at 147.815 kb on + strand, within EX31_RS06800 at 147.816 kb on - strand, within EX31_RS06800 at 147.945 kb on + strand, within EX31_RS06800 at 147.946 kb on - strand, within EX31_RS06800 at 147.946 kb on - strand, within EX31_RS06800 at 148.070 kb on - strand, within EX31_RS06800 at 148.319 kb on - strand, within EX31_RS06805 at 148.322 kb on - strand, within EX31_RS06805 at 148.322 kb on - strand, within EX31_RS06805 at 148.403 kb on + strand, within EX31_RS06805 at 148.404 kb on - strand, within EX31_RS06805 at 148.480 kb on - strand, within EX31_RS06805 at 148.581 kb on - strand, within EX31_RS06805 at 148.583 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.695 kb on - strand, within EX31_RS06805 at 148.825 kb on - strand, within EX31_RS06805
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 146,370 + EX31_RS06790 0.85 +1.9 146,370 + EX31_RS06790 0.85 +0.3 146,370 + EX31_RS06790 0.85 +0.8 146,760 + EX31_RS06795 0.22 -0.7 146,761 - EX31_RS06795 0.22 -1.3 146,761 - EX31_RS06795 0.22 +1.4 146,763 - EX31_RS06795 0.23 +0.4 146,831 + EX31_RS06795 0.32 -0.1 147,105 + EX31_RS06795 0.67 -1.1 147,106 - EX31_RS06795 0.67 -0.8 147,212 + EX31_RS06795 0.81 -0.3 147,213 - EX31_RS06795 0.81 -0.7 147,213 - EX31_RS06795 0.81 -0.6 147,213 - EX31_RS06795 0.81 +0.5 147,435 + -0.1 147,815 + EX31_RS06800 0.56 -1.9 147,816 - EX31_RS06800 0.57 -1.1 147,945 + EX31_RS06800 0.72 -1.3 147,946 - EX31_RS06800 0.73 -1.0 147,946 - EX31_RS06800 0.73 -0.4 148,070 - EX31_RS06800 0.88 -0.1 148,319 - EX31_RS06805 0.15 -0.8 148,322 - EX31_RS06805 0.16 +1.4 148,322 - EX31_RS06805 0.16 +1.3 148,403 + EX31_RS06805 0.24 +0.3 148,404 - EX31_RS06805 0.24 +0.8 148,480 - EX31_RS06805 0.31 +0.5 148,581 - EX31_RS06805 0.41 -0.1 148,583 - EX31_RS06805 0.42 -0.3 148,592 - EX31_RS06805 0.42 -0.3 148,592 - EX31_RS06805 0.42 +0.1 148,695 - EX31_RS06805 0.53 -0.9 148,825 - EX31_RS06805 0.66 -0.4
Or see this region's nucleotide sequence