Strain Fitness in Rahnella sp. WP5 around EX31_RS06565

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06560 and EX31_RS06565 are separated by 73 nucleotidesEX31_RS06565 and EX31_RS06570 are separated by 119 nucleotides EX31_RS06560: EX31_RS06560 - NarK family nitrate/nitrite MFS transporter, at 87,936 to 89,354 _RS06560 EX31_RS06565: EX31_RS06565 - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 89,428 to 89,700 _RS06565 EX31_RS06570: EX31_RS06570 - nickel/cobalt efflux protein RcnA, at 89,820 to 90,695 _RS06570 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1at 88.438 kb on + strand, within EX31_RS06560at 88.438 kb on + strand, within EX31_RS06560at 88.439 kb on - strand, within EX31_RS06560at 88.536 kb on - strand, within EX31_RS06560at 88.717 kb on + strand, within EX31_RS06560at 88.718 kb on - strand, within EX31_RS06560at 88.722 kb on + strand, within EX31_RS06560at 88.723 kb on - strand, within EX31_RS06560at 88.723 kb on - strand, within EX31_RS06560at 88.778 kb on + strand, within EX31_RS06560at 88.778 kb on + strand, within EX31_RS06560at 88.908 kb on + strand, within EX31_RS06560at 88.908 kb on + strand, within EX31_RS06560at 89.000 kb on + strand, within EX31_RS06560at 89.001 kb on - strand, within EX31_RS06560at 89.043 kb on + strand, within EX31_RS06560at 89.271 kb on + strandat 89.271 kb on + strandat 89.304 kb on + strandat 89.304 kb on + strandat 89.317 kb on + strandat 89.317 kb on + strandat 89.318 kb on - strandat 89.439 kb on - strandat 89.508 kb on + strand, within EX31_RS06565at 89.508 kb on + strand, within EX31_RS06565at 89.508 kb on + strand, within EX31_RS06565at 89.508 kb on + strand, within EX31_RS06565at 89.509 kb on - strand, within EX31_RS06565at 89.623 kb on - strand, within EX31_RS06565at 89.623 kb on - strand, within EX31_RS06565at 89.737 kb on + strandat 89.764 kb on - strandat 89.798 kb on + strandat 89.798 kb on + strandat 89.816 kb on + strandat 89.843 kb on - strandat 89.843 kb on - strandat 89.881 kb on + strandat 89.976 kb on - strand, within EX31_RS06570at 89.980 kb on + strand, within EX31_RS06570at 90.008 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.045 kb on + strand, within EX31_RS06570at 90.046 kb on - strand, within EX31_RS06570at 90.046 kb on - strand, within EX31_RS06570at 90.046 kb on - strand, within EX31_RS06570at 90.269 kb on + strand, within EX31_RS06570at 90.270 kb on - strand, within EX31_RS06570at 90.270 kb on - strand, within EX31_RS06570at 90.270 kb on - strand, within EX31_RS06570at 90.270 kb on - strand, within EX31_RS06570at 90.471 kb on - strand, within EX31_RS06570at 90.499 kb on + strand, within EX31_RS06570at 90.499 kb on + strand, within EX31_RS06570at 90.535 kb on + strand, within EX31_RS06570at 90.657 kb on + strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.658 kb on - strandat 90.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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88,438 + EX31_RS06560 0.35 +0.3
88,438 + EX31_RS06560 0.35 -2.4
88,439 - EX31_RS06560 0.35 +0.7
88,536 - EX31_RS06560 0.42 -0.1
88,717 + EX31_RS06560 0.55 +0.4
88,718 - EX31_RS06560 0.55 -0.2
88,722 + EX31_RS06560 0.55 -1.7
88,723 - EX31_RS06560 0.55 +0.5
88,723 - EX31_RS06560 0.55 +1.3
88,778 + EX31_RS06560 0.59 -1.3
88,778 + EX31_RS06560 0.59 +0.2
88,908 + EX31_RS06560 0.68 +0.3
88,908 + EX31_RS06560 0.68 -0.2
89,000 + EX31_RS06560 0.75 +0.0
89,001 - EX31_RS06560 0.75 -0.7
89,043 + EX31_RS06560 0.78 -0.8
89,271 + +0.3
89,271 + +1.3
89,304 + +0.4
89,304 + -1.1
89,317 + +0.9
89,317 + +0.3
89,318 - -0.4
89,439 - +0.1
89,508 + EX31_RS06565 0.29 -0.7
89,508 + EX31_RS06565 0.29 -1.5
89,508 + EX31_RS06565 0.29 +1.6
89,508 + EX31_RS06565 0.29 +0.4
89,509 - EX31_RS06565 0.30 -0.0
89,623 - EX31_RS06565 0.71 -0.4
89,623 - EX31_RS06565 0.71 -0.6
89,737 + +0.5
89,764 - -1.8
89,798 + +0.8
89,798 + -1.2
89,816 + +1.1
89,843 - +0.3
89,843 - +0.8
89,881 + +0.7
89,976 - EX31_RS06570 0.18 +0.5
89,980 + EX31_RS06570 0.18 -0.0
90,008 + EX31_RS06570 0.21 -2.5
90,045 + EX31_RS06570 0.26 -0.2
90,045 + EX31_RS06570 0.26 -0.6
90,045 + EX31_RS06570 0.26 +1.5
90,045 + EX31_RS06570 0.26 -0.3
90,045 + EX31_RS06570 0.26 -0.2
90,045 + EX31_RS06570 0.26 -0.1
90,046 - EX31_RS06570 0.26 -0.2
90,046 - EX31_RS06570 0.26 -1.0
90,046 - EX31_RS06570 0.26 +1.7
90,269 + EX31_RS06570 0.51 +0.6
90,270 - EX31_RS06570 0.51 -0.0
90,270 - EX31_RS06570 0.51 +1.2
90,270 - EX31_RS06570 0.51 -1.0
90,270 - EX31_RS06570 0.51 -0.9
90,471 - EX31_RS06570 0.74 -0.0
90,499 + EX31_RS06570 0.78 -0.3
90,499 + EX31_RS06570 0.78 -1.4
90,535 + EX31_RS06570 0.82 -0.3
90,657 + -0.2
90,657 + -2.4
90,657 + +0.3
90,657 + -0.4
90,657 + -0.6
90,658 - -0.6
90,658 - +0.1

Or see this region's nucleotide sequence