Strain Fitness in Rahnella sp. WP5 around EX31_RS02595

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02585 and EX31_RS02590 are separated by 4 nucleotidesEX31_RS02590 and EX31_RS02595 overlap by 4 nucleotidesEX31_RS02595 and EX31_RS02600 are separated by 93 nucleotides EX31_RS02585: EX31_RS02585 - nucleoside hydrolase, at 548,720 to 549,682 _RS02585 EX31_RS02590: EX31_RS02590 - nucleoside hydrolase, at 549,687 to 550,637 _RS02590 EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518 _RS02595 EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171 _RS02600 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1at 549.689 kb on - strandat 549.819 kb on - strand, within EX31_RS02590at 549.819 kb on - strand, within EX31_RS02590at 549.819 kb on - strand, within EX31_RS02590at 549.889 kb on + strand, within EX31_RS02590at 549.889 kb on + strand, within EX31_RS02590at 549.890 kb on - strand, within EX31_RS02590at 549.890 kb on - strand, within EX31_RS02590at 549.890 kb on - strand, within EX31_RS02590at 549.890 kb on - strand, within EX31_RS02590at 549.890 kb on - strand, within EX31_RS02590at 549.969 kb on + strand, within EX31_RS02590at 549.969 kb on + strand, within EX31_RS02590at 550.100 kb on + strand, within EX31_RS02590at 550.101 kb on - strand, within EX31_RS02590at 550.283 kb on + strand, within EX31_RS02590at 550.284 kb on - strand, within EX31_RS02590at 550.284 kb on - strand, within EX31_RS02590at 550.370 kb on + strand, within EX31_RS02590at 550.493 kb on + strand, within EX31_RS02590at 550.493 kb on + strand, within EX31_RS02590at 550.494 kb on - strand, within EX31_RS02590at 550.494 kb on - strand, within EX31_RS02590at 550.754 kb on - strand, within EX31_RS02595at 550.756 kb on + strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.768 kb on + strand, within EX31_RS02595at 550.773 kb on + strand, within EX31_RS02595at 550.773 kb on + strand, within EX31_RS02595at 550.774 kb on - strand, within EX31_RS02595at 550.774 kb on - strand, within EX31_RS02595at 550.857 kb on + strand, within EX31_RS02595at 550.885 kb on + strand, within EX31_RS02595at 550.886 kb on - strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.961 kb on + strand, within EX31_RS02595at 550.961 kb on + strand, within EX31_RS02595at 550.962 kb on - strand, within EX31_RS02595at 551.029 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.033 kb on - strand, within EX31_RS02595at 551.033 kb on - strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.042 kb on - strand, within EX31_RS02595at 551.042 kb on - strand, within EX31_RS02595at 551.111 kb on - strand, within EX31_RS02595at 551.112 kb on + strand, within EX31_RS02595at 551.113 kb on - strand, within EX31_RS02595at 551.113 kb on - strand, within EX31_RS02595at 551.337 kb on - strand, within EX31_RS02595at 551.491 kb on - strandat 551.518 kb on + strandat 551.519 kb on - strandat 551.519 kb on - strandat 551.519 kb on - strandat 551.535 kb on - strandat 551.538 kb on - strandat 551.538 kb on - strandat 551.542 kb on + strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.545 kb on + strandat 551.546 kb on - strandat 551.546 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.553 kb on + strandat 551.644 kb on + strandat 551.667 kb on + strandat 551.667 kb on + strandat 551.668 kb on - strandat 551.668 kb on - strandat 551.668 kb on - strandat 551.671 kb on + strandat 551.671 kb on + strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.673 kb on + strandat 551.673 kb on + strandat 551.674 kb on - strandat 551.674 kb on - strandat 551.674 kb on - strandat 551.698 kb on - strandat 551.698 kb on - strandat 551.815 kb on + strand, within EX31_RS02600at 551.974 kb on - strand, within EX31_RS02600at 551.974 kb on - strand, within EX31_RS02600at 552.008 kb on - strand, within EX31_RS02600at 552.053 kb on - strand, within EX31_RS02600at 552.154 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.365 kb on + strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.376 kb on + strand, within EX31_RS02600at 552.377 kb on - strand, within EX31_RS02600at 552.460 kb on + strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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549,689 - -0.6
549,819 - EX31_RS02590 0.14 -0.3
549,819 - EX31_RS02590 0.14 +0.1
549,819 - EX31_RS02590 0.14 +1.5
549,889 + EX31_RS02590 0.21 -0.6
549,889 + EX31_RS02590 0.21 +0.4
549,890 - EX31_RS02590 0.21 +0.5
549,890 - EX31_RS02590 0.21 +0.4
549,890 - EX31_RS02590 0.21 -0.4
549,890 - EX31_RS02590 0.21 -0.3
549,890 - EX31_RS02590 0.21 -0.2
549,969 + EX31_RS02590 0.30 -0.3
549,969 + EX31_RS02590 0.30 +0.5
550,100 + EX31_RS02590 0.43 -1.0
550,101 - EX31_RS02590 0.44 -0.3
550,283 + EX31_RS02590 0.63 -0.6
550,284 - EX31_RS02590 0.63 -0.4
550,284 - EX31_RS02590 0.63 -1.3
550,370 + EX31_RS02590 0.72 -0.3
550,493 + EX31_RS02590 0.85 -2.6
550,493 + EX31_RS02590 0.85 -0.1
550,494 - EX31_RS02590 0.85 +0.2
550,494 - EX31_RS02590 0.85 -0.4
550,754 - EX31_RS02595 0.14 -0.5
550,756 + EX31_RS02595 0.14 -0.3
550,757 - EX31_RS02595 0.14 -0.4
550,757 - EX31_RS02595 0.14 -1.3
550,757 - EX31_RS02595 0.14 -0.5
550,757 - EX31_RS02595 0.14 -0.3
550,768 + EX31_RS02595 0.15 -0.2
550,773 + EX31_RS02595 0.16 -0.3
550,773 + EX31_RS02595 0.16 -0.3
550,774 - EX31_RS02595 0.16 -0.5
550,774 - EX31_RS02595 0.16 +0.8
550,857 + EX31_RS02595 0.25 -1.6
550,885 + EX31_RS02595 0.28 -0.4
550,886 - EX31_RS02595 0.28 -0.2
550,942 + EX31_RS02595 0.35 -0.7
550,942 + EX31_RS02595 0.35 -1.0
550,942 + EX31_RS02595 0.35 -0.2
550,942 + EX31_RS02595 0.35 -1.7
550,943 - EX31_RS02595 0.35 -1.8
550,943 - EX31_RS02595 0.35 -1.0
550,943 - EX31_RS02595 0.35 -0.1
550,943 - EX31_RS02595 0.35 -0.1
550,943 - EX31_RS02595 0.35 -0.8
550,943 - EX31_RS02595 0.35 -1.5
550,961 + EX31_RS02595 0.37 -1.4
550,961 + EX31_RS02595 0.37 -0.6
550,962 - EX31_RS02595 0.37 +0.5
551,029 + EX31_RS02595 0.45 -1.0
551,032 + EX31_RS02595 0.45 +0.2
551,032 + EX31_RS02595 0.45 -0.4
551,032 + EX31_RS02595 0.45 +0.4
551,032 + EX31_RS02595 0.45 -1.6
551,033 - EX31_RS02595 0.45 -0.8
551,033 - EX31_RS02595 0.45 -2.5
551,034 + EX31_RS02595 0.45 +0.4
551,034 + EX31_RS02595 0.45 +0.2
551,034 + EX31_RS02595 0.45 -2.0
551,034 + EX31_RS02595 0.45 -0.0
551,035 - EX31_RS02595 0.45 -1.0
551,035 - EX31_RS02595 0.45 -0.7
551,035 - EX31_RS02595 0.45 -1.8
551,035 - EX31_RS02595 0.45 +0.2
551,035 - EX31_RS02595 0.45 -0.8
551,035 - EX31_RS02595 0.45 +0.2
551,035 - EX31_RS02595 0.45 +0.6
551,035 - EX31_RS02595 0.45 -0.0
551,035 - EX31_RS02595 0.45 -0.5
551,035 - EX31_RS02595 0.45 -1.1
551,042 - EX31_RS02595 0.46 +1.1
551,042 - EX31_RS02595 0.46 -0.5
551,111 - EX31_RS02595 0.54 +0.1
551,112 + EX31_RS02595 0.54 -0.5
551,113 - EX31_RS02595 0.54 -1.1
551,113 - EX31_RS02595 0.54 -0.2
551,337 - EX31_RS02595 0.79 +0.1
551,491 - -0.2
551,518 + -0.2
551,519 - +0.1
551,519 - -1.0
551,519 - +0.5
551,535 - -0.1
551,538 - -0.2
551,538 - +0.2
551,542 + -0.9
551,543 - -1.0
551,543 - -0.5
551,543 - +0.6
551,543 - +0.0
551,543 - -1.7
551,543 - +0.1
551,543 - -0.6
551,543 - -0.5
551,543 - -0.4
551,543 - -1.2
551,543 - +0.6
551,543 - -0.0
551,543 - -0.2
551,543 - +0.3
551,543 - -0.2
551,545 + -0.1
551,546 - -0.3
551,546 - -0.3
551,551 - -0.2
551,551 - +0.4
551,551 - -1.1
551,551 - -0.4
551,553 + -0.1
551,644 + -0.5
551,667 + -0.3
551,667 + +0.3
551,668 - +0.1
551,668 - +0.0
551,668 - +1.0
551,671 + -0.5
551,671 + -0.6
551,672 - -0.6
551,672 - -0.6
551,672 - -1.1
551,672 - +0.4
551,672 - -0.0
551,673 + -0.5
551,673 + -0.4
551,674 - +0.2
551,674 - -0.2
551,674 - +0.1
551,698 - -0.7
551,698 - +1.2
551,815 + EX31_RS02600 0.13 +0.5
551,974 - EX31_RS02600 0.23 -0.5
551,974 - EX31_RS02600 0.23 +0.4
552,008 - EX31_RS02600 0.25 -0.5
552,053 - EX31_RS02600 0.28 +0.8
552,154 - EX31_RS02600 0.35 -0.7
552,190 - EX31_RS02600 0.37 +0.1
552,190 - EX31_RS02600 0.37 -0.0
552,190 - EX31_RS02600 0.37 +0.5
552,365 + EX31_RS02600 0.48 +0.7
552,366 - EX31_RS02600 0.48 -0.1
552,366 - EX31_RS02600 0.48 -1.2
552,369 + EX31_RS02600 0.49 -1.3
552,369 + EX31_RS02600 0.49 -0.6
552,376 + EX31_RS02600 0.49 -0.2
552,377 - EX31_RS02600 0.49 -0.1
552,460 + EX31_RS02600 0.54 -0.5
552,461 - EX31_RS02600 0.54 +0.4
552,461 - EX31_RS02600 0.54 +0.1

Or see this region's nucleotide sequence