Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02220 and EX31_RS02225 are separated by 504 nucleotides EX31_RS02225 and EX31_RS02230 are separated by 59 nucleotides EX31_RS02230 and EX31_RS02235 are separated by 120 nucleotides EX31_RS02235 and EX31_RS02240 are separated by 118 nucleotides
EX31_RS02220: EX31_RS02220 - adenylate kinase, at 481,287 to 481,823
_RS02220
EX31_RS02225: EX31_RS02225 - hypothetical protein, at 482,328 to 482,585
_RS02225
EX31_RS02230: EX31_RS02230 - SDR family oxidoreductase, at 482,645 to 483,502
_RS02230
EX31_RS02235: EX31_RS02235 - helix-turn-helix transcriptional regulator, at 483,623 to 484,039
_RS02235
EX31_RS02240: EX31_RS02240 - antibiotic biosynthesis monooxygenase, at 484,158 to 484,724
_RS02240
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.740 kb on - strand, within EX31_RS02220 at 481.740 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.749 kb on - strand, within EX31_RS02220 at 481.749 kb on - strand, within EX31_RS02220 at 481.880 kb on + strand at 481.881 kb on - strand at 481.881 kb on - strand at 481.884 kb on - strand at 481.884 kb on - strand at 481.895 kb on + strand at 481.895 kb on + strand at 481.896 kb on - strand at 481.896 kb on - strand at 481.906 kb on + strand at 481.907 kb on - strand at 481.907 kb on - strand at 481.922 kb on - strand at 481.937 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.950 kb on - strand at 481.967 kb on + strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.971 kb on - strand at 482.033 kb on - strand at 482.045 kb on + strand at 482.045 kb on + strand at 482.046 kb on - strand at 482.046 kb on - strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.101 kb on - strand at 482.101 kb on - strand at 482.101 kb on - strand at 482.112 kb on + strand at 482.201 kb on + strand at 482.202 kb on - strand at 482.202 kb on - strand at 482.255 kb on + strand at 482.398 kb on + strand, within EX31_RS02225 at 482.462 kb on + strand, within EX31_RS02225 at 482.462 kb on + strand, within EX31_RS02225 at 482.465 kb on + strand, within EX31_RS02225 at 482.465 kb on + strand, within EX31_RS02225 at 482.519 kb on + strand, within EX31_RS02225 at 482.520 kb on - strand, within EX31_RS02225 at 482.542 kb on + strand, within EX31_RS02225 at 482.604 kb on + strand at 482.634 kb on + strand at 482.720 kb on - strand at 482.720 kb on - strand at 482.776 kb on + strand, within EX31_RS02230 at 482.776 kb on + strand, within EX31_RS02230 at 482.777 kb on - strand, within EX31_RS02230 at 482.777 kb on - strand, within EX31_RS02230 at 482.846 kb on - strand, within EX31_RS02230 at 482.846 kb on - strand, within EX31_RS02230 at 482.847 kb on + strand, within EX31_RS02230 at 482.848 kb on - strand, within EX31_RS02230 at 482.983 kb on - strand, within EX31_RS02230 at 483.072 kb on + strand, within EX31_RS02230 at 483.073 kb on - strand, within EX31_RS02230 at 483.073 kb on - strand, within EX31_RS02230 at 483.178 kb on + strand, within EX31_RS02230 at 483.179 kb on - strand, within EX31_RS02230 at 483.521 kb on + strand at 483.537 kb on + strand at 483.537 kb on + strand at 483.538 kb on - strand at 483.579 kb on - strand at 483.586 kb on - strand at 483.605 kb on - strand at 483.605 kb on - strand at 483.619 kb on + strand at 483.630 kb on + strand at 483.703 kb on + strand, within EX31_RS02235 at 483.703 kb on + strand, within EX31_RS02235 at 483.754 kb on - strand, within EX31_RS02235 at 483.849 kb on + strand, within EX31_RS02235 at 483.849 kb on + strand, within EX31_RS02235 at 483.917 kb on + strand, within EX31_RS02235 at 484.026 kb on + strand at 484.037 kb on + strand at 484.037 kb on + strand at 484.038 kb on - strand at 484.038 kb on - strand at 484.038 kb on - strand at 484.038 kb on - strand at 484.042 kb on - strand at 484.054 kb on + strand at 484.080 kb on - strand at 484.080 kb on - strand at 484.091 kb on + strand at 484.091 kb on + strand at 484.103 kb on - strand at 484.135 kb on - strand at 484.135 kb on - strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.157 kb on + strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.158 kb on - strand at 484.208 kb on + strand at 484.237 kb on - strand, within EX31_RS02240 at 484.237 kb on - strand, within EX31_RS02240 at 484.260 kb on - strand, within EX31_RS02240 at 484.274 kb on + strand, within EX31_RS02240 at 484.332 kb on + strand, within EX31_RS02240 at 484.332 kb on + strand, within EX31_RS02240 at 484.332 kb on + strand, within EX31_RS02240 at 484.332 kb on + strand, within EX31_RS02240 at 484.333 kb on - strand, within EX31_RS02240 at 484.333 kb on - strand, within EX31_RS02240 at 484.333 kb on - strand, within EX31_RS02240 at 484.334 kb on + strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.335 kb on - strand, within EX31_RS02240 at 484.370 kb on + strand, within EX31_RS02240 at 484.371 kb on - strand, within EX31_RS02240 at 484.397 kb on + strand, within EX31_RS02240
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 481,739 + EX31_RS02220 0.84 -0.3 481,739 + EX31_RS02220 0.84 -0.2 481,739 + EX31_RS02220 0.84 +0.5 481,739 + EX31_RS02220 0.84 -0.0 481,739 + EX31_RS02220 0.84 -0.2 481,740 - EX31_RS02220 0.84 -0.1 481,740 - EX31_RS02220 0.84 -0.1 481,742 - EX31_RS02220 0.85 +0.3 481,742 - EX31_RS02220 0.85 -0.1 481,742 - EX31_RS02220 0.85 +0.3 481,749 - EX31_RS02220 0.86 -0.4 481,749 - EX31_RS02220 0.86 +1.9 481,880 + +0.8 481,881 - +1.1 481,881 - -0.2 481,884 - +0.4 481,884 - -0.7 481,895 + -0.1 481,895 + -2.2 481,896 - -0.2 481,896 - -2.0 481,906 + +0.7 481,907 - -0.8 481,907 - +0.7 481,922 - +0.1 481,937 + +0.0 481,949 + -0.4 481,949 + +0.8 481,949 + -0.2 481,949 + -0.8 481,949 + +1.0 481,949 + -1.0 481,950 - -0.2 481,967 + +0.4 481,968 - +0.0 481,968 - -0.4 481,968 - +0.2 481,968 - -0.5 481,971 - +0.1 482,033 - -0.9 482,045 + -1.2 482,045 + +0.2 482,046 - +0.3 482,046 - +0.6 482,100 + +0.0 482,100 + +0.7 482,100 + -0.3 482,100 + -0.1 482,100 + -0.0 482,100 + -0.2 482,100 + +0.8 482,100 + -1.0 482,101 - -0.2 482,101 - -0.1 482,101 - -1.0 482,112 + +0.0 482,201 + -0.1 482,202 - -0.3 482,202 - -0.1 482,255 + -0.3 482,398 + EX31_RS02225 0.27 +0.7 482,462 + EX31_RS02225 0.52 -1.2 482,462 + EX31_RS02225 0.52 +0.9 482,465 + EX31_RS02225 0.53 +0.2 482,465 + EX31_RS02225 0.53 +0.2 482,519 + EX31_RS02225 0.74 -0.2 482,520 - EX31_RS02225 0.74 +0.0 482,542 + EX31_RS02225 0.83 +1.9 482,604 + -0.6 482,634 + -0.5 482,720 - -0.4 482,720 - +0.8 482,776 + EX31_RS02230 0.15 -0.7 482,776 + EX31_RS02230 0.15 -0.6 482,777 - EX31_RS02230 0.15 +0.5 482,777 - EX31_RS02230 0.15 -1.0 482,846 - EX31_RS02230 0.23 +0.5 482,846 - EX31_RS02230 0.23 -0.3 482,847 + EX31_RS02230 0.24 -1.3 482,848 - EX31_RS02230 0.24 -0.3 482,983 - EX31_RS02230 0.39 -0.6 483,072 + EX31_RS02230 0.50 -0.0 483,073 - EX31_RS02230 0.50 -1.6 483,073 - EX31_RS02230 0.50 -0.7 483,178 + EX31_RS02230 0.62 +0.4 483,179 - EX31_RS02230 0.62 -0.5 483,521 + -0.3 483,537 + +0.4 483,537 + +0.8 483,538 - -0.6 483,579 - +0.9 483,586 - +0.6 483,605 - +0.2 483,605 - -1.3 483,619 + +1.0 483,630 + -1.7 483,703 + EX31_RS02235 0.19 -0.4 483,703 + EX31_RS02235 0.19 +1.1 483,754 - EX31_RS02235 0.31 +1.0 483,849 + EX31_RS02235 0.54 -0.4 483,849 + EX31_RS02235 0.54 +0.1 483,917 + EX31_RS02235 0.71 -0.6 484,026 + -0.8 484,037 + -0.6 484,037 + +0.4 484,038 - -1.3 484,038 - -0.5 484,038 - -0.2 484,038 - +0.4 484,042 - -0.2 484,054 + -0.7 484,080 - -0.5 484,080 - +0.3 484,091 + -0.1 484,091 + +0.5 484,103 - -0.6 484,135 - +1.2 484,135 - +0.4 484,157 + +0.2 484,157 + -0.0 484,157 + -0.4 484,157 + -0.5 484,157 + -0.5 484,157 + -0.1 484,157 + +0.3 484,157 + +2.4 484,157 + +0.1 484,157 + +0.5 484,158 - -0.6 484,158 - +0.3 484,158 - -0.2 484,158 - +0.7 484,158 - -0.5 484,158 - +0.6 484,158 - -0.5 484,158 - +0.4 484,158 - -0.3 484,158 - +1.1 484,158 - +0.3 484,158 - -0.4 484,158 - -0.8 484,158 - +0.2 484,158 - -0.6 484,158 - +0.2 484,158 - -0.6 484,208 + +0.5 484,237 - EX31_RS02240 0.14 -0.2 484,237 - EX31_RS02240 0.14 +0.9 484,260 - EX31_RS02240 0.18 +0.5 484,274 + EX31_RS02240 0.20 +0.6 484,332 + EX31_RS02240 0.31 +0.1 484,332 + EX31_RS02240 0.31 +0.5 484,332 + EX31_RS02240 0.31 +0.7 484,332 + EX31_RS02240 0.31 +0.5 484,333 - EX31_RS02240 0.31 -0.4 484,333 - EX31_RS02240 0.31 -0.5 484,333 - EX31_RS02240 0.31 +1.1 484,334 + EX31_RS02240 0.31 -1.4 484,335 - EX31_RS02240 0.31 +0.4 484,335 - EX31_RS02240 0.31 +0.2 484,335 - EX31_RS02240 0.31 +1.4 484,335 - EX31_RS02240 0.31 -0.3 484,335 - EX31_RS02240 0.31 -0.2 484,335 - EX31_RS02240 0.31 +0.3 484,335 - EX31_RS02240 0.31 +1.7 484,335 - EX31_RS02240 0.31 +0.0 484,370 + EX31_RS02240 0.37 +0.0 484,371 - EX31_RS02240 0.38 -0.2 484,397 + EX31_RS02240 0.42 -1.4
Or see this region's nucleotide sequence