Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02145 and EX31_RS02150 are separated by 197 nucleotides EX31_RS02150 and EX31_RS02155 are separated by 69 nucleotides EX31_RS02155 and EX31_RS02160 are separated by 275 nucleotides
EX31_RS02145: EX31_RS02145 - methionine synthase, at 468,051 to 469,082
_RS02145
EX31_RS02150: EX31_RS02150 - YceI family protein, at 469,280 to 469,840
_RS02150
EX31_RS02155: EX31_RS02155 - HD domain-containing protein, at 469,910 to 471,040
_RS02155
EX31_RS02160: EX31_RS02160 - helix-turn-helix domain-containing protein, at 471,316 to 472,098
_RS02160
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.105 kb on + strand at 469.173 kb on + strand at 469.173 kb on + strand at 469.173 kb on + strand at 469.174 kb on - strand at 469.174 kb on - strand at 469.288 kb on + strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.290 kb on + strand at 469.290 kb on + strand at 469.291 kb on - strand at 469.291 kb on - strand at 469.322 kb on - strand at 469.426 kb on + strand, within EX31_RS02150 at 469.427 kb on - strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.565 kb on - strand, within EX31_RS02150 at 469.574 kb on + strand, within EX31_RS02150 at 469.574 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.738 kb on + strand, within EX31_RS02150 at 469.739 kb on - strand, within EX31_RS02150 at 469.739 kb on - strand, within EX31_RS02150 at 469.911 kb on + strand at 469.939 kb on + strand at 470.050 kb on - strand, within EX31_RS02155 at 470.062 kb on - strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.258 kb on - strand, within EX31_RS02155 at 470.258 kb on - strand, within EX31_RS02155 at 470.333 kb on + strand, within EX31_RS02155 at 470.334 kb on - strand, within EX31_RS02155 at 470.416 kb on + strand, within EX31_RS02155 at 470.513 kb on + strand, within EX31_RS02155 at 470.514 kb on - strand, within EX31_RS02155 at 470.871 kb on - strand, within EX31_RS02155 at 470.944 kb on + strand at 470.944 kb on + strand at 470.944 kb on + strand at 470.945 kb on - strand at 470.945 kb on - strand at 470.945 kb on - strand at 470.946 kb on + strand at 470.946 kb on + strand at 470.946 kb on + strand at 470.946 kb on + strand at 470.947 kb on - strand at 470.947 kb on - strand at 470.947 kb on - strand at 470.947 kb on - strand at 470.947 kb on - strand at 470.947 kb on - strand at 470.984 kb on + strand at 470.985 kb on - strand at 471.031 kb on + strand at 471.032 kb on - strand at 471.032 kb on - strand at 471.042 kb on + strand at 471.043 kb on - strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.121 kb on + strand at 471.122 kb on - strand at 471.122 kb on - strand at 471.122 kb on - strand at 471.122 kb on - strand at 471.122 kb on - strand at 471.122 kb on - strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.123 kb on + strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.124 kb on - strand at 471.125 kb on + strand at 471.126 kb on - strand at 471.127 kb on + strand at 471.128 kb on - strand at 471.128 kb on - strand at 471.163 kb on + strand at 471.163 kb on + strand at 471.166 kb on + strand at 471.166 kb on + strand at 471.166 kb on + strand at 471.166 kb on + strand at 471.167 kb on - strand at 471.167 kb on - strand at 471.205 kb on + strand at 471.206 kb on - strand at 471.206 kb on - strand at 471.206 kb on - strand at 471.236 kb on + strand at 471.236 kb on + strand at 471.243 kb on + strand at 471.243 kb on + strand at 471.243 kb on + strand at 471.243 kb on + strand at 471.243 kb on + strand at 471.244 kb on - strand at 471.244 kb on - strand at 471.244 kb on - strand at 471.244 kb on - strand at 471.245 kb on + strand at 471.246 kb on - strand at 471.248 kb on + strand at 471.248 kb on + strand at 471.248 kb on + strand at 471.251 kb on + strand at 471.589 kb on - strand, within EX31_RS02160 at 471.610 kb on - strand, within EX31_RS02160 at 471.750 kb on + strand, within EX31_RS02160 at 471.858 kb on + strand, within EX31_RS02160 at 471.951 kb on + strand, within EX31_RS02160 at 471.952 kb on - strand, within EX31_RS02160 at 471.970 kb on + strand, within EX31_RS02160 at 471.970 kb on + strand, within EX31_RS02160 at 471.971 kb on - strand, within EX31_RS02160 at 471.972 kb on + strand, within EX31_RS02160 at 471.984 kb on - strand, within EX31_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 469,036 + -1.6 469,036 + +0.8 469,036 + +1.7 469,036 + +0.4 469,036 + -0.2 469,036 + +0.4 469,037 - -0.4 469,037 - -0.2 469,037 - +0.2 469,037 - -0.2 469,105 + +0.0 469,173 + -0.4 469,173 + -0.6 469,173 + -0.5 469,174 - -0.3 469,174 - -0.4 469,288 + -1.2 469,289 - +0.1 469,289 - -0.3 469,289 - +0.5 469,289 - +1.0 469,289 - -0.8 469,289 - -1.6 469,290 + +0.7 469,290 + -0.3 469,291 - -0.1 469,291 - -0.0 469,322 - +0.2 469,426 + EX31_RS02150 0.26 +0.5 469,427 - EX31_RS02150 0.26 -1.2 469,564 + EX31_RS02150 0.51 -0.5 469,564 + EX31_RS02150 0.51 -0.3 469,564 + EX31_RS02150 0.51 -0.9 469,564 + EX31_RS02150 0.51 +0.6 469,564 + EX31_RS02150 0.51 -0.2 469,564 + EX31_RS02150 0.51 -0.8 469,564 + EX31_RS02150 0.51 -0.9 469,565 - EX31_RS02150 0.51 -0.0 469,574 + EX31_RS02150 0.52 -0.9 469,574 + EX31_RS02150 0.52 +0.8 469,634 + EX31_RS02150 0.63 -0.7 469,634 + EX31_RS02150 0.63 -0.6 469,634 + EX31_RS02150 0.63 -0.2 469,634 + EX31_RS02150 0.63 -0.9 469,634 + EX31_RS02150 0.63 -1.9 469,634 + EX31_RS02150 0.63 -0.0 469,634 + EX31_RS02150 0.63 -1.6 469,634 + EX31_RS02150 0.63 -1.0 469,634 + EX31_RS02150 0.63 +0.2 469,635 - EX31_RS02150 0.63 -0.9 469,635 - EX31_RS02150 0.63 -1.0 469,635 - EX31_RS02150 0.63 +0.5 469,738 + EX31_RS02150 0.82 +0.8 469,739 - EX31_RS02150 0.82 +0.9 469,739 - EX31_RS02150 0.82 +0.8 469,911 + -1.8 469,939 + -0.0 470,050 - EX31_RS02155 0.12 +0.8 470,062 - EX31_RS02155 0.13 -1.8 470,255 + EX31_RS02155 0.31 -0.8 470,255 + EX31_RS02155 0.31 -0.0 470,255 + EX31_RS02155 0.31 -1.1 470,255 + EX31_RS02155 0.31 -0.2 470,255 + EX31_RS02155 0.31 -1.9 470,256 - EX31_RS02155 0.31 +0.1 470,256 - EX31_RS02155 0.31 +0.4 470,256 - EX31_RS02155 0.31 -0.5 470,256 - EX31_RS02155 0.31 -0.0 470,256 - EX31_RS02155 0.31 -0.6 470,256 - EX31_RS02155 0.31 -0.7 470,258 - EX31_RS02155 0.31 +0.0 470,258 - EX31_RS02155 0.31 +0.1 470,333 + EX31_RS02155 0.37 -0.0 470,334 - EX31_RS02155 0.37 -0.1 470,416 + EX31_RS02155 0.45 -0.7 470,513 + EX31_RS02155 0.53 -0.5 470,514 - EX31_RS02155 0.53 -1.6 470,871 - EX31_RS02155 0.85 -0.7 470,944 + +0.4 470,944 + -0.5 470,944 + +0.6 470,945 - +0.5 470,945 - +0.1 470,945 - -0.5 470,946 + +0.3 470,946 + -0.5 470,946 + +0.6 470,946 + -0.4 470,947 - +0.2 470,947 - +1.1 470,947 - -0.4 470,947 - -0.9 470,947 - -0.5 470,947 - +0.4 470,984 + -0.2 470,985 - +0.1 471,031 + -0.5 471,032 - +0.2 471,032 - -1.1 471,042 + +0.1 471,043 - -0.3 471,121 + -2.5 471,121 + -0.8 471,121 + +1.1 471,121 + -0.8 471,121 + +0.8 471,121 + -2.1 471,121 + +0.9 471,121 + +0.5 471,122 - +0.8 471,122 - +0.4 471,122 - +0.1 471,122 - -0.2 471,122 - -0.2 471,122 - +1.5 471,123 + +0.0 471,123 + -0.3 471,123 + -0.2 471,123 + -1.1 471,123 + -0.2 471,123 + +0.1 471,123 + -0.1 471,123 + -0.3 471,123 + -0.5 471,123 + +0.6 471,123 + +0.5 471,124 - -0.7 471,124 - -0.1 471,124 - +0.4 471,124 - -1.2 471,124 - +0.7 471,125 + +0.4 471,126 - -0.1 471,127 + +0.4 471,128 - -0.4 471,128 - -0.5 471,163 + -0.6 471,163 + +0.2 471,166 + +0.2 471,166 + -1.0 471,166 + -0.2 471,166 + -0.2 471,167 - -0.9 471,167 - -2.2 471,205 + -0.3 471,206 - -0.5 471,206 - -0.5 471,206 - -1.2 471,236 + -0.2 471,236 + -0.9 471,243 + -0.6 471,243 + +0.7 471,243 + +0.8 471,243 + +1.7 471,243 + -0.3 471,244 - -0.4 471,244 - -0.5 471,244 - +0.6 471,244 - -1.2 471,245 + -1.2 471,246 - -1.1 471,248 + +0.0 471,248 + -1.6 471,248 + -0.4 471,251 + +0.1 471,589 - EX31_RS02160 0.35 +0.0 471,610 - EX31_RS02160 0.38 -0.1 471,750 + EX31_RS02160 0.55 -0.3 471,858 + EX31_RS02160 0.69 +0.0 471,951 + EX31_RS02160 0.81 +0.4 471,952 - EX31_RS02160 0.81 +0.9 471,970 + EX31_RS02160 0.84 -1.1 471,970 + EX31_RS02160 0.84 -0.1 471,971 - EX31_RS02160 0.84 -0.6 471,972 + EX31_RS02160 0.84 -0.5 471,984 - EX31_RS02160 0.85 +0.1
Or see this region's nucleotide sequence