Strain Fitness in Rahnella sp. WP5 around EX31_RS01670

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01655 and EX31_RS01660 are separated by 62 nucleotidesEX31_RS01660 and EX31_RS01665 are separated by 10 nucleotidesEX31_RS01665 and EX31_RS01670 overlap by 8 nucleotidesEX31_RS01670 and EX31_RS01675 are separated by 1 nucleotides EX31_RS01655: EX31_RS01655 - hypothetical protein, at 367,554 to 367,757 _RS01655 EX31_RS01660: EX31_RS01660 - hypothetical protein, at 367,820 to 368,077 _RS01660 EX31_RS01665: EX31_RS01665 - lysis protein, at 368,088 to 368,594 _RS01665 EX31_RS01670: EX31_RS01670 - lysozyme, at 368,587 to 369,117 _RS01670 EX31_RS01675: EX31_RS01675 - hypothetical protein, at 369,119 to 369,388 _RS01675 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1at 367.595 kb on - strand, within EX31_RS01655at 367.657 kb on + strand, within EX31_RS01655at 367.721 kb on + strand, within EX31_RS01655at 367.722 kb on - strand, within EX31_RS01655at 367.722 kb on - strand, within EX31_RS01655at 367.725 kb on + strand, within EX31_RS01655at 367.726 kb on - strand, within EX31_RS01655at 367.726 kb on - strand, within EX31_RS01655at 367.761 kb on + strandat 367.762 kb on - strandat 367.770 kb on + strandat 367.770 kb on + strandat 367.804 kb on + strandat 367.805 kb on - strandat 367.807 kb on + strandat 367.807 kb on + strandat 367.808 kb on - strandat 367.812 kb on - strandat 367.812 kb on - strandat 367.821 kb on + strandat 367.822 kb on - strandat 367.908 kb on + strand, within EX31_RS01660at 367.909 kb on - strand, within EX31_RS01660at 367.909 kb on - strand, within EX31_RS01660at 367.948 kb on + strand, within EX31_RS01660at 367.985 kb on - strand, within EX31_RS01660at 368.021 kb on - strand, within EX31_RS01660at 368.044 kb on + strand, within EX31_RS01660at 368.090 kb on - strandat 368.126 kb on - strandat 368.126 kb on - strandat 368.126 kb on - strandat 368.704 kb on - strand, within EX31_RS01670at 368.836 kb on + strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.837 kb on - strand, within EX31_RS01670at 368.845 kb on - strand, within EX31_RS01670at 368.908 kb on - strand, within EX31_RS01670at 368.951 kb on + strand, within EX31_RS01670at 368.952 kb on - strand, within EX31_RS01670at 368.952 kb on - strand, within EX31_RS01670at 368.970 kb on + strand, within EX31_RS01670at 369.253 kb on - strand, within EX31_RS01675at 369.253 kb on - strand, within EX31_RS01675at 369.253 kb on - strand, within EX31_RS01675at 369.317 kb on + strand, within EX31_RS01675at 369.318 kb on - strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.354 kb on + strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.355 kb on - strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.358 kb on + strand, within EX31_RS01675at 369.359 kb on - strand, within EX31_RS01675at 369.437 kb on - strandat 369.559 kb on - strandat 369.562 kb on + strandat 369.563 kb on - strandat 369.641 kb on + strandat 369.641 kb on + strandat 369.642 kb on - strandat 369.642 kb on - strandat 369.690 kb on + strandat 369.845 kb on - strandat 369.863 kb on - strandat 369.863 kb on - strandat 369.865 kb on + strandat 369.866 kb on - strandat 369.866 kb on - strandat 369.866 kb on - strandat 369.953 kb on + strandat 369.968 kb on - strandat 369.972 kb on - strandat 369.972 kb on - strandat 370.035 kb on + strandat 370.036 kb on - strandat 370.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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367,595 - EX31_RS01655 0.20 +0.1
367,657 + EX31_RS01655 0.50 -1.9
367,721 + EX31_RS01655 0.82 +0.2
367,722 - EX31_RS01655 0.82 -0.1
367,722 - EX31_RS01655 0.82 +0.1
367,725 + EX31_RS01655 0.84 +0.6
367,726 - EX31_RS01655 0.84 +0.4
367,726 - EX31_RS01655 0.84 +1.4
367,761 + +0.5
367,762 - +0.7
367,770 + +0.4
367,770 + -0.3
367,804 + +1.0
367,805 - +1.2
367,807 + +0.0
367,807 + -0.1
367,808 - +0.8
367,812 - +0.4
367,812 - -1.5
367,821 + +1.5
367,822 - -0.4
367,908 + EX31_RS01660 0.34 +0.6
367,909 - EX31_RS01660 0.34 +0.2
367,909 - EX31_RS01660 0.34 -0.5
367,948 + EX31_RS01660 0.50 +0.8
367,985 - EX31_RS01660 0.64 +1.3
368,021 - EX31_RS01660 0.78 +0.3
368,044 + EX31_RS01660 0.87 +0.5
368,090 - -0.1
368,126 - +0.5
368,126 - -0.3
368,126 - -0.5
368,704 - EX31_RS01670 0.22 -2.1
368,836 + EX31_RS01670 0.47 -0.1
368,837 - EX31_RS01670 0.47 +0.1
368,837 - EX31_RS01670 0.47 -0.5
368,837 - EX31_RS01670 0.47 +0.0
368,845 - EX31_RS01670 0.49 -2.0
368,908 - EX31_RS01670 0.60 -0.8
368,951 + EX31_RS01670 0.69 +0.3
368,952 - EX31_RS01670 0.69 -2.1
368,952 - EX31_RS01670 0.69 -0.1
368,970 + EX31_RS01670 0.72 +0.7
369,253 - EX31_RS01675 0.50 +0.2
369,253 - EX31_RS01675 0.50 -0.3
369,253 - EX31_RS01675 0.50 +0.1
369,317 + EX31_RS01675 0.73 +0.3
369,318 - EX31_RS01675 0.74 -0.1
369,354 + EX31_RS01675 0.87 +0.5
369,354 + EX31_RS01675 0.87 -0.1
369,354 + EX31_RS01675 0.87 -1.0
369,355 - EX31_RS01675 0.87 +0.0
369,355 - EX31_RS01675 0.87 +0.5
369,355 - EX31_RS01675 0.87 +0.5
369,355 - EX31_RS01675 0.87 +1.3
369,358 + EX31_RS01675 0.89 +0.1
369,358 + EX31_RS01675 0.89 -0.8
369,358 + EX31_RS01675 0.89 +0.3
369,358 + EX31_RS01675 0.89 -0.3
369,358 + EX31_RS01675 0.89 -0.7
369,359 - EX31_RS01675 0.89 +0.7
369,437 - -0.1
369,559 - -0.4
369,562 + -0.8
369,563 - -0.7
369,641 + -0.0
369,641 + +1.0
369,642 - +0.3
369,642 - +0.4
369,690 + +0.1
369,845 - -0.6
369,863 - -0.1
369,863 - +0.5
369,865 + +1.5
369,866 - +0.0
369,866 - -0.5
369,866 - -0.8
369,953 + -0.9
369,968 - +1.3
369,972 - +0.0
369,972 - -0.9
370,035 + +0.1
370,036 - +0.1
370,090 - -0.7

Or see this region's nucleotide sequence