Strain Fitness in Rahnella sp. WP5 around EX31_RS01260

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01250 and EX31_RS01255 are separated by 134 nucleotidesEX31_RS01255 and EX31_RS01260 are separated by 52 nucleotidesEX31_RS01260 and EX31_RS01265 are separated by 202 nucleotidesEX31_RS01265 and EX31_RS01270 are separated by 115 nucleotides EX31_RS01250: EX31_RS01250 - M24 family metallopeptidase, at 279,090 to 280,484 _RS01250 EX31_RS01255: EX31_RS01255 - Crp/Fnr family transcriptional regulator, at 280,619 to 281,251 _RS01255 EX31_RS01260: EX31_RS01260 - YebG family protein, at 281,304 to 281,699 _RS01260 EX31_RS01265: EX31_RS01265 - GNAT family N-acetyltransferase, at 281,902 to 282,357 _RS01265 EX31_RS01270: EX31_RS01270 - LysR family transcriptional regulator, at 282,473 to 283,348 _RS01270 Position (kb) 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 280.327 kb on + strand, within EX31_RS01250at 280.327 kb on + strand, within EX31_RS01250at 280.328 kb on - strand, within EX31_RS01250at 280.433 kb on - strandat 280.433 kb on - strandat 280.466 kb on - strandat 280.520 kb on - strandat 280.582 kb on - strandat 280.582 kb on - strandat 280.614 kb on + strandat 280.737 kb on - strand, within EX31_RS01255at 280.784 kb on - strand, within EX31_RS01255at 280.960 kb on - strand, within EX31_RS01255at 281.007 kb on - strand, within EX31_RS01255at 281.007 kb on - strand, within EX31_RS01255at 281.120 kb on + strand, within EX31_RS01255at 281.192 kb on + strandat 281.192 kb on + strandat 281.212 kb on + strandat 281.212 kb on + strandat 281.317 kb on - strandat 281.317 kb on - strandat 281.489 kb on + strand, within EX31_RS01260at 281.572 kb on - strand, within EX31_RS01260at 281.617 kb on + strand, within EX31_RS01260at 281.714 kb on - strandat 281.754 kb on - strandat 281.804 kb on + strandat 281.805 kb on - strandat 281.805 kb on - strandat 281.805 kb on - strandat 281.805 kb on - strandat 281.816 kb on + strandat 281.817 kb on - strandat 281.817 kb on - strandat 281.817 kb on - strandat 281.817 kb on - strandat 281.817 kb on - strandat 281.935 kb on + strandat 281.935 kb on + strandat 281.935 kb on + strandat 281.935 kb on + strandat 281.936 kb on - strandat 281.936 kb on - strandat 282.145 kb on + strand, within EX31_RS01265at 282.145 kb on + strand, within EX31_RS01265at 282.146 kb on - strand, within EX31_RS01265at 282.146 kb on - strand, within EX31_RS01265at 282.146 kb on - strand, within EX31_RS01265at 282.246 kb on + strand, within EX31_RS01265at 282.247 kb on - strand, within EX31_RS01265at 282.247 kb on - strand, within EX31_RS01265at 282.307 kb on + strand, within EX31_RS01265at 282.474 kb on + strandat 282.474 kb on + strandat 282.474 kb on + strandat 282.474 kb on + strandat 282.474 kb on + strandat 282.475 kb on - strandat 282.475 kb on - strandat 282.475 kb on - strandat 282.475 kb on - strandat 282.476 kb on + strandat 282.478 kb on + strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.479 kb on - strandat 282.524 kb on - strandat 282.686 kb on - strand, within EX31_RS01270at 282.686 kb on - strand, within EX31_RS01270

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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280,327 + EX31_RS01250 0.89 +0.9
280,327 + EX31_RS01250 0.89 -0.2
280,328 - EX31_RS01250 0.89 +0.6
280,433 - +0.1
280,433 - -1.0
280,466 - +1.6
280,520 - -0.7
280,582 - -0.0
280,582 - -1.1
280,614 + -0.4
280,737 - EX31_RS01255 0.19 -0.3
280,784 - EX31_RS01255 0.26 +0.5
280,960 - EX31_RS01255 0.54 +1.1
281,007 - EX31_RS01255 0.61 -0.1
281,007 - EX31_RS01255 0.61 +0.7
281,120 + EX31_RS01255 0.79 -1.6
281,192 + +0.2
281,192 + -0.6
281,212 + +0.9
281,212 + -0.2
281,317 - -0.3
281,317 - -0.7
281,489 + EX31_RS01260 0.47 -0.2
281,572 - EX31_RS01260 0.68 -0.3
281,617 + EX31_RS01260 0.79 -0.7
281,714 - +0.2
281,754 - +0.7
281,804 + -0.0
281,805 - +0.0
281,805 - -0.2
281,805 - +0.7
281,805 - +0.1
281,816 + -1.9
281,817 - +0.2
281,817 - +0.6
281,817 - -0.3
281,817 - -0.3
281,817 - -0.2
281,935 + +0.2
281,935 + +0.6
281,935 + +0.3
281,935 + -1.2
281,936 - +0.0
281,936 - +1.8
282,145 + EX31_RS01265 0.53 +1.0
282,145 + EX31_RS01265 0.53 +0.1
282,146 - EX31_RS01265 0.54 -2.1
282,146 - EX31_RS01265 0.54 +0.6
282,146 - EX31_RS01265 0.54 -0.7
282,246 + EX31_RS01265 0.75 -0.3
282,247 - EX31_RS01265 0.76 -0.1
282,247 - EX31_RS01265 0.76 +0.1
282,307 + EX31_RS01265 0.89 +0.2
282,474 + +0.1
282,474 + -0.2
282,474 + -0.2
282,474 + -0.6
282,474 + -0.1
282,475 - -1.2
282,475 - -1.0
282,475 - -2.8
282,475 - -0.3
282,476 + +1.6
282,478 + +0.0
282,479 - +0.7
282,479 - +1.5
282,479 - -0.3
282,479 - -0.1
282,479 - +0.5
282,479 - -0.2
282,479 - -0.7
282,524 - +0.1
282,686 - EX31_RS01270 0.24 +0.2
282,686 - EX31_RS01270 0.24 -0.2

Or see this region's nucleotide sequence