Strain Fitness in Rahnella sp. WP5 around EX31_RS00430

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00425 and EX31_RS00430 overlap by 4 nucleotidesEX31_RS00430 and EX31_RS00435 are separated by 76 nucleotides EX31_RS00425: EX31_RS00425 - sucrose-6-phosphate hydrolase, at 89,887 to 91,296 _RS00425 EX31_RS00430: EX31_RS00430 - PTS sucrose transporter subunit IIBC, at 91,293 to 92,666 _RS00430 EX31_RS00435: EX31_RS00435 - carbohydrate porin, at 92,743 to 94,323 _RS00435 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 90.364 kb on + strand, within EX31_RS00425at 90.365 kb on - strand, within EX31_RS00425at 90.378 kb on - strand, within EX31_RS00425at 90.458 kb on + strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.555 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.654 kb on - strand, within EX31_RS00425at 90.677 kb on - strand, within EX31_RS00425at 90.740 kb on - strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.788 kb on - strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425at 91.016 kb on + strand, within EX31_RS00425at 91.064 kb on - strand, within EX31_RS00425at 91.170 kb on + strandat 91.315 kb on + strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.376 kb on - strandat 91.552 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.769 kb on - strand, within EX31_RS00430at 92.007 kb on + strand, within EX31_RS00430at 92.007 kb on + strand, within EX31_RS00430at 92.008 kb on - strand, within EX31_RS00430at 92.091 kb on - strand, within EX31_RS00430at 92.196 kb on - strand, within EX31_RS00430at 92.217 kb on - strand, within EX31_RS00430at 92.217 kb on - strand, within EX31_RS00430at 92.229 kb on - strand, within EX31_RS00430at 92.318 kb on + strand, within EX31_RS00430at 92.666 kb on + strandat 92.667 kb on - strandat 92.667 kb on - strandat 92.667 kb on - strandat 92.682 kb on - strandat 92.687 kb on + strandat 92.745 kb on - strandat 92.806 kb on - strandat 92.828 kb on + strandat 92.829 kb on - strandat 92.829 kb on - strandat 92.829 kb on - strandat 92.829 kb on - strandat 92.858 kb on + strandat 92.858 kb on + strandat 92.858 kb on + strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.942 kb on + strand, within EX31_RS00435at 92.967 kb on - strand, within EX31_RS00435at 92.967 kb on - strand, within EX31_RS00435at 92.967 kb on - strand, within EX31_RS00435at 92.976 kb on - strand, within EX31_RS00435at 92.997 kb on + strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.998 kb on - strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 92.999 kb on + strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.000 kb on - strand, within EX31_RS00435at 93.005 kb on + strand, within EX31_RS00435at 93.005 kb on + strand, within EX31_RS00435at 93.005 kb on + strand, within EX31_RS00435at 93.018 kb on - strand, within EX31_RS00435at 93.078 kb on + strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.079 kb on - strand, within EX31_RS00435at 93.081 kb on - strand, within EX31_RS00435at 93.098 kb on + strand, within EX31_RS00435at 93.098 kb on + strand, within EX31_RS00435at 93.099 kb on - strand, within EX31_RS00435at 93.139 kb on - strand, within EX31_RS00435at 93.139 kb on - strand, within EX31_RS00435at 93.139 kb on - strand, within EX31_RS00435at 93.170 kb on + strand, within EX31_RS00435at 93.171 kb on - strand, within EX31_RS00435at 93.171 kb on - strand, within EX31_RS00435at 93.297 kb on - strand, within EX31_RS00435at 93.297 kb on - strand, within EX31_RS00435at 93.297 kb on - strand, within EX31_RS00435at 93.299 kb on - strand, within EX31_RS00435at 93.328 kb on - strand, within EX31_RS00435at 93.351 kb on + strand, within EX31_RS00435at 93.351 kb on + strand, within EX31_RS00435at 93.352 kb on - strand, within EX31_RS00435at 93.352 kb on - strand, within EX31_RS00435at 93.352 kb on - strand, within EX31_RS00435at 93.437 kb on + strand, within EX31_RS00435at 93.437 kb on + strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.438 kb on - strand, within EX31_RS00435at 93.459 kb on - strand, within EX31_RS00435at 93.519 kb on - strand, within EX31_RS00435at 93.531 kb on + strand, within EX31_RS00435at 93.563 kb on + strand, within EX31_RS00435at 93.563 kb on + strand, within EX31_RS00435at 93.563 kb on + strand, within EX31_RS00435at 93.563 kb on + strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435at 93.564 kb on - strand, within EX31_RS00435

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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90,364 + EX31_RS00425 0.34 -0.7
90,365 - EX31_RS00425 0.34 +0.4
90,378 - EX31_RS00425 0.35 +0.9
90,458 + EX31_RS00425 0.40 +0.2
90,459 - EX31_RS00425 0.41 -0.3
90,459 - EX31_RS00425 0.41 +1.0
90,555 + EX31_RS00425 0.47 -0.2
90,653 + EX31_RS00425 0.54 -1.7
90,653 + EX31_RS00425 0.54 +0.5
90,654 - EX31_RS00425 0.54 -2.7
90,677 - EX31_RS00425 0.56 +0.3
90,740 - EX31_RS00425 0.60 -0.2
90,785 + EX31_RS00425 0.64 +1.0
90,785 + EX31_RS00425 0.64 +0.1
90,785 + EX31_RS00425 0.64 -0.3
90,785 + EX31_RS00425 0.64 -0.6
90,785 + EX31_RS00425 0.64 +0.4
90,785 + EX31_RS00425 0.64 -0.0
90,785 + EX31_RS00425 0.64 -1.8
90,785 + EX31_RS00425 0.64 -1.2
90,785 + EX31_RS00425 0.64 -0.1
90,786 - EX31_RS00425 0.64 -0.8
90,786 - EX31_RS00425 0.64 -0.2
90,786 - EX31_RS00425 0.64 +0.0
90,786 - EX31_RS00425 0.64 +1.0
90,786 - EX31_RS00425 0.64 -0.4
90,786 - EX31_RS00425 0.64 +0.5
90,788 - EX31_RS00425 0.64 -0.6
90,836 + EX31_RS00425 0.67 +0.3
90,836 + EX31_RS00425 0.67 -1.2
90,837 - EX31_RS00425 0.67 -0.5
90,837 - EX31_RS00425 0.67 +0.2
91,016 + EX31_RS00425 0.80 -0.1
91,064 - EX31_RS00425 0.83 +1.0
91,170 + +0.0
91,315 + +0.1
91,316 - -0.1
91,316 - -0.2
91,316 - -0.2
91,316 - -0.7
91,316 - +0.4
91,316 - -1.1
91,376 - +0.2
91,552 - EX31_RS00430 0.19 -0.2
91,622 - EX31_RS00430 0.24 -0.2
91,622 - EX31_RS00430 0.24 -0.7
91,622 - EX31_RS00430 0.24 -0.9
91,671 - EX31_RS00430 0.28 -1.0
91,671 - EX31_RS00430 0.28 -0.2
91,671 - EX31_RS00430 0.28 +0.2
91,769 - EX31_RS00430 0.35 -0.1
92,007 + EX31_RS00430 0.52 -0.8
92,007 + EX31_RS00430 0.52 -0.8
92,008 - EX31_RS00430 0.52 +0.1
92,091 - EX31_RS00430 0.58 +0.1
92,196 - EX31_RS00430 0.66 -1.1
92,217 - EX31_RS00430 0.67 -0.3
92,217 - EX31_RS00430 0.67 +1.4
92,229 - EX31_RS00430 0.68 +0.5
92,318 + EX31_RS00430 0.75 -0.0
92,666 + -0.2
92,667 - +1.4
92,667 - -0.8
92,667 - +0.3
92,682 - +0.8
92,687 + +0.8
92,745 - +1.4
92,806 - -1.1
92,828 + +0.2
92,829 - -0.2
92,829 - -1.0
92,829 - +0.2
92,829 - +0.6
92,858 + -0.3
92,858 + -0.5
92,858 + -0.5
92,859 - +0.8
92,859 - +0.1
92,859 - -1.4
92,859 - +0.9
92,859 - -0.1
92,859 - +0.2
92,859 - +0.3
92,859 - -0.2
92,859 - +0.3
92,859 - +0.3
92,859 - +0.8
92,859 - +0.7
92,859 - +1.3
92,859 - -1.1
92,859 - +0.8
92,859 - -0.2
92,942 + EX31_RS00435 0.13 +0.1
92,967 - EX31_RS00435 0.14 +0.1
92,967 - EX31_RS00435 0.14 -1.0
92,967 - EX31_RS00435 0.14 -0.1
92,976 - EX31_RS00435 0.15 +0.5
92,997 + EX31_RS00435 0.16 +0.1
92,998 - EX31_RS00435 0.16 +0.2
92,998 - EX31_RS00435 0.16 -0.1
92,998 - EX31_RS00435 0.16 -0.5
92,998 - EX31_RS00435 0.16 -0.5
92,998 - EX31_RS00435 0.16 +0.1
92,998 - EX31_RS00435 0.16 +0.6
92,998 - EX31_RS00435 0.16 -0.6
92,998 - EX31_RS00435 0.16 +0.2
92,998 - EX31_RS00435 0.16 +0.7
92,998 - EX31_RS00435 0.16 -0.3
92,999 + EX31_RS00435 0.16 +0.1
92,999 + EX31_RS00435 0.16 -0.4
92,999 + EX31_RS00435 0.16 +1.8
92,999 + EX31_RS00435 0.16 -1.3
92,999 + EX31_RS00435 0.16 -0.9
92,999 + EX31_RS00435 0.16 -1.1
93,000 - EX31_RS00435 0.16 -0.8
93,000 - EX31_RS00435 0.16 +0.9
93,000 - EX31_RS00435 0.16 -0.0
93,000 - EX31_RS00435 0.16 -0.2
93,000 - EX31_RS00435 0.16 +0.0
93,000 - EX31_RS00435 0.16 -0.8
93,000 - EX31_RS00435 0.16 -0.2
93,000 - EX31_RS00435 0.16 -1.1
93,000 - EX31_RS00435 0.16 -0.9
93,000 - EX31_RS00435 0.16 -0.2
93,000 - EX31_RS00435 0.16 -0.1
93,000 - EX31_RS00435 0.16 +0.8
93,000 - EX31_RS00435 0.16 +0.5
93,000 - EX31_RS00435 0.16 -0.7
93,000 - EX31_RS00435 0.16 +0.4
93,005 + EX31_RS00435 0.17 +0.5
93,005 + EX31_RS00435 0.17 +0.5
93,005 + EX31_RS00435 0.17 +0.2
93,018 - EX31_RS00435 0.17 -0.4
93,078 + EX31_RS00435 0.21 +0.4
93,079 - EX31_RS00435 0.21 +0.9
93,079 - EX31_RS00435 0.21 -0.9
93,079 - EX31_RS00435 0.21 -0.2
93,079 - EX31_RS00435 0.21 +0.1
93,079 - EX31_RS00435 0.21 -0.2
93,079 - EX31_RS00435 0.21 -0.6
93,081 - EX31_RS00435 0.21 +2.0
93,098 + EX31_RS00435 0.22 -0.6
93,098 + EX31_RS00435 0.22 -0.2
93,099 - EX31_RS00435 0.23 +0.7
93,139 - EX31_RS00435 0.25 -0.4
93,139 - EX31_RS00435 0.25 -0.3
93,139 - EX31_RS00435 0.25 -0.4
93,170 + EX31_RS00435 0.27 +0.1
93,171 - EX31_RS00435 0.27 +0.8
93,171 - EX31_RS00435 0.27 +0.2
93,297 - EX31_RS00435 0.35 -0.1
93,297 - EX31_RS00435 0.35 -0.5
93,297 - EX31_RS00435 0.35 -1.3
93,299 - EX31_RS00435 0.35 +0.2
93,328 - EX31_RS00435 0.37 -0.4
93,351 + EX31_RS00435 0.38 +0.3
93,351 + EX31_RS00435 0.38 -0.3
93,352 - EX31_RS00435 0.39 +0.2
93,352 - EX31_RS00435 0.39 -1.0
93,352 - EX31_RS00435 0.39 +0.4
93,437 + EX31_RS00435 0.44 +0.5
93,437 + EX31_RS00435 0.44 +0.4
93,438 - EX31_RS00435 0.44 -1.4
93,438 - EX31_RS00435 0.44 +1.0
93,438 - EX31_RS00435 0.44 +1.0
93,438 - EX31_RS00435 0.44 +1.0
93,438 - EX31_RS00435 0.44 +0.4
93,438 - EX31_RS00435 0.44 -0.1
93,459 - EX31_RS00435 0.45 +0.3
93,519 - EX31_RS00435 0.49 +1.1
93,531 + EX31_RS00435 0.50 +1.0
93,563 + EX31_RS00435 0.52 -0.9
93,563 + EX31_RS00435 0.52 +1.5
93,563 + EX31_RS00435 0.52 -1.0
93,563 + EX31_RS00435 0.52 -0.5
93,564 - EX31_RS00435 0.52 +0.4
93,564 - EX31_RS00435 0.52 -0.7
93,564 - EX31_RS00435 0.52 +0.5
93,564 - EX31_RS00435 0.52 +0.3
93,564 - EX31_RS00435 0.52 +0.4
93,564 - EX31_RS00435 0.52 -0.4

Or see this region's nucleotide sequence