Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20945 and EX31_RS20950 are separated by 175 nucleotides EX31_RS20950 and EX31_RS20955 are separated by 226 nucleotides EX31_RS20955 and EX31_RS20960 are separated by 123 nucleotides
EX31_RS20945: EX31_RS20945 - tyrosine-type recombinase/integrase, at 833,112 to 834,326
_RS20945
EX31_RS20950: EX31_RS20950 - tRNA-Thr, at 834,502 to 834,577
_RS20950
EX31_RS20955: EX31_RS20955 - tRNA-Thr, at 834,804 to 834,879
_RS20955
EX31_RS20960: EX31_RS20960 - alpha/beta fold hydrolase, at 835,003 to 835,980
_RS20960
Position (kb) 834
835 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 833.616 kb on - strand, within EX31_RS20945 at 833.616 kb on - strand, within EX31_RS20945 at 833.663 kb on - strand, within EX31_RS20945 at 833.678 kb on + strand, within EX31_RS20945 at 833.678 kb on + strand, within EX31_RS20945 at 833.706 kb on - strand, within EX31_RS20945 at 833.768 kb on + strand, within EX31_RS20945 at 833.769 kb on - strand, within EX31_RS20945 at 833.769 kb on - strand, within EX31_RS20945 at 833.770 kb on + strand, within EX31_RS20945 at 834.081 kb on + strand, within EX31_RS20945 at 834.082 kb on - strand, within EX31_RS20945 at 834.082 kb on - strand, within EX31_RS20945 at 834.145 kb on - strand, within EX31_RS20945 at 834.160 kb on + strand, within EX31_RS20945 at 834.161 kb on - strand, within EX31_RS20945 at 834.162 kb on + strand, within EX31_RS20945 at 834.162 kb on + strand, within EX31_RS20945 at 834.162 kb on + strand, within EX31_RS20945 at 834.163 kb on - strand, within EX31_RS20945 at 834.163 kb on - strand, within EX31_RS20945 at 834.163 kb on - strand, within EX31_RS20945 at 834.178 kb on - strand, within EX31_RS20945 at 834.197 kb on + strand, within EX31_RS20945 at 834.202 kb on + strand, within EX31_RS20945 at 834.202 kb on + strand, within EX31_RS20945 at 834.202 kb on + strand, within EX31_RS20945 at 834.203 kb on - strand, within EX31_RS20945 at 834.236 kb on + strand at 834.243 kb on + strand at 834.243 kb on + strand at 834.243 kb on + strand at 834.244 kb on - strand at 834.244 kb on - strand at 834.244 kb on - strand at 834.247 kb on + strand at 834.247 kb on + strand at 834.247 kb on + strand at 834.247 kb on + strand at 834.248 kb on - strand at 834.248 kb on - strand at 834.248 kb on - strand at 834.248 kb on - strand at 834.274 kb on + strand at 834.274 kb on + strand at 834.275 kb on - strand at 834.275 kb on - strand at 834.275 kb on - strand at 834.282 kb on - strand at 834.282 kb on - strand at 834.424 kb on + strand at 834.424 kb on + strand at 834.425 kb on - strand at 834.446 kb on + strand at 834.446 kb on + strand at 834.446 kb on + strand at 834.447 kb on - strand at 834.447 kb on - strand at 834.447 kb on - strand at 834.447 kb on - strand at 834.447 kb on - strand at 834.456 kb on + strand at 834.569 kb on + strand, within EX31_RS20950 at 834.569 kb on + strand, within EX31_RS20950 at 834.569 kb on + strand, within EX31_RS20950 at 834.569 kb on + strand, within EX31_RS20950 at 834.569 kb on + strand, within EX31_RS20950 at 834.569 kb on + strand, within EX31_RS20950 at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.613 kb on + strand at 834.613 kb on + strand at 834.613 kb on + strand at 834.613 kb on + strand at 834.614 kb on - strand at 834.666 kb on + strand at 834.667 kb on - strand at 834.684 kb on + strand at 834.684 kb on + strand at 834.685 kb on - strand at 834.690 kb on + strand at 834.690 kb on + strand at 834.690 kb on + strand at 834.692 kb on + strand at 834.692 kb on + strand at 834.692 kb on + strand at 834.692 kb on + strand at 834.693 kb on - strand at 834.693 kb on - strand at 834.693 kb on - strand at 834.693 kb on - strand at 834.755 kb on + strand at 834.755 kb on + strand at 834.755 kb on + strand at 834.755 kb on + strand at 834.756 kb on - strand at 834.756 kb on - strand at 834.768 kb on + strand at 834.769 kb on - strand at 834.800 kb on + strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.801 kb on - strand at 834.837 kb on - strand, within EX31_RS20955 at 834.837 kb on - strand, within EX31_RS20955 at 834.843 kb on + strand, within EX31_RS20955 at 834.844 kb on - strand, within EX31_RS20955 at 834.844 kb on - strand, within EX31_RS20955 at 834.844 kb on - strand, within EX31_RS20955 at 834.844 kb on - strand, within EX31_RS20955 at 834.860 kb on - strand, within EX31_RS20955 at 834.860 kb on - strand, within EX31_RS20955 at 834.860 kb on - strand, within EX31_RS20955 at 834.860 kb on - strand, within EX31_RS20955 at 834.864 kb on - strand, within EX31_RS20955 at 834.864 kb on - strand, within EX31_RS20955 at 834.864 kb on - strand, within EX31_RS20955 at 834.864 kb on - strand, within EX31_RS20955 at 834.904 kb on - strand at 834.904 kb on - strand at 834.904 kb on - strand at 834.904 kb on - strand at 834.913 kb on - strand at 834.917 kb on + strand at 834.917 kb on + strand at 834.918 kb on - strand at 834.957 kb on + strand at 834.957 kb on + strand at 834.957 kb on + strand at 834.958 kb on - strand at 834.958 kb on - strand at 835.050 kb on - strand at 835.050 kb on - strand at 835.195 kb on + strand, within EX31_RS20960 at 835.195 kb on + strand, within EX31_RS20960 at 835.195 kb on + strand, within EX31_RS20960 at 835.195 kb on + strand, within EX31_RS20960 at 835.196 kb on - strand, within EX31_RS20960 at 835.230 kb on - strand, within EX31_RS20960 at 835.342 kb on - strand, within EX31_RS20960 at 835.534 kb on - strand, within EX31_RS20960 at 835.534 kb on - strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.553 kb on + strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.554 kb on - strand, within EX31_RS20960 at 835.558 kb on - strand, within EX31_RS20960
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 833,616 - EX31_RS20945 0.41 -0.2 833,616 - EX31_RS20945 0.41 +0.4 833,663 - EX31_RS20945 0.45 -0.0 833,678 + EX31_RS20945 0.47 +0.3 833,678 + EX31_RS20945 0.47 +3.3 833,706 - EX31_RS20945 0.49 -0.4 833,768 + EX31_RS20945 0.54 -0.3 833,769 - EX31_RS20945 0.54 +0.2 833,769 - EX31_RS20945 0.54 -0.6 833,770 + EX31_RS20945 0.54 +0.2 834,081 + EX31_RS20945 0.80 -0.1 834,082 - EX31_RS20945 0.80 -0.0 834,082 - EX31_RS20945 0.80 -0.2 834,145 - EX31_RS20945 0.85 -0.5 834,160 + EX31_RS20945 0.86 -0.6 834,161 - EX31_RS20945 0.86 -0.4 834,162 + EX31_RS20945 0.86 +2.1 834,162 + EX31_RS20945 0.86 +1.0 834,162 + EX31_RS20945 0.86 -0.2 834,163 - EX31_RS20945 0.87 -0.1 834,163 - EX31_RS20945 0.87 +0.3 834,163 - EX31_RS20945 0.87 -1.0 834,178 - EX31_RS20945 0.88 -0.0 834,197 + EX31_RS20945 0.89 -1.4 834,202 + EX31_RS20945 0.90 +0.0 834,202 + EX31_RS20945 0.90 +0.6 834,202 + EX31_RS20945 0.90 +0.4 834,203 - EX31_RS20945 0.90 +0.1 834,236 + -1.2 834,243 + -0.3 834,243 + -0.2 834,243 + -0.1 834,244 - +0.0 834,244 - -0.3 834,244 - -2.6 834,247 + +0.1 834,247 + +0.4 834,247 + -0.7 834,247 + +0.6 834,248 - +0.5 834,248 - +1.0 834,248 - -1.9 834,248 - -0.2 834,274 + -0.0 834,274 + +0.3 834,275 - +0.3 834,275 - +0.4 834,275 - +0.1 834,282 - -0.1 834,282 - -0.3 834,424 + +0.5 834,424 + -0.5 834,425 - -0.9 834,446 + +0.2 834,446 + +0.1 834,446 + -0.5 834,447 - -0.7 834,447 - +0.3 834,447 - -0.2 834,447 - +0.4 834,447 - -1.4 834,456 + +0.1 834,569 + EX31_RS20950 0.88 -0.1 834,569 + EX31_RS20950 0.88 +0.1 834,569 + EX31_RS20950 0.88 -0.5 834,569 + EX31_RS20950 0.88 +0.1 834,569 + EX31_RS20950 0.88 -0.9 834,569 + EX31_RS20950 0.88 -0.8 834,570 - +0.2 834,570 - -0.1 834,570 - +0.2 834,570 - -0.2 834,570 - +0.2 834,570 - -0.4 834,570 - +0.2 834,570 - +0.4 834,613 + +1.1 834,613 + -0.5 834,613 + +0.1 834,613 + -1.6 834,614 - +0.2 834,666 + +0.3 834,667 - +0.1 834,684 + +1.0 834,684 + +0.4 834,685 - +0.1 834,690 + +0.0 834,690 + +0.5 834,690 + -0.2 834,692 + +0.1 834,692 + +0.5 834,692 + +0.1 834,692 + +0.5 834,693 - -0.5 834,693 - +0.9 834,693 - +0.3 834,693 - +0.4 834,755 + -0.5 834,755 + +0.4 834,755 + -0.0 834,755 + -0.1 834,756 - +0.3 834,756 - +0.7 834,768 + +0.9 834,769 - -0.7 834,800 + +1.3 834,801 - +0.5 834,801 - +0.3 834,801 - -0.3 834,801 - -0.3 834,801 - +0.2 834,801 - -0.1 834,801 - +0.5 834,801 - +0.7 834,801 - -0.6 834,837 - EX31_RS20955 0.43 -0.6 834,837 - EX31_RS20955 0.43 +0.3 834,843 + EX31_RS20955 0.51 -1.4 834,844 - EX31_RS20955 0.53 -0.5 834,844 - EX31_RS20955 0.53 +0.4 834,844 - EX31_RS20955 0.53 +0.7 834,844 - EX31_RS20955 0.53 -0.2 834,860 - EX31_RS20955 0.74 -0.2 834,860 - EX31_RS20955 0.74 -0.0 834,860 - EX31_RS20955 0.74 -0.2 834,860 - EX31_RS20955 0.74 +0.7 834,864 - EX31_RS20955 0.79 -0.9 834,864 - EX31_RS20955 0.79 +0.5 834,864 - EX31_RS20955 0.79 -1.0 834,864 - EX31_RS20955 0.79 +0.2 834,904 - +0.2 834,904 - +0.5 834,904 - +0.2 834,904 - -0.3 834,913 - -0.4 834,917 + -0.6 834,917 + +0.5 834,918 - -0.6 834,957 + -0.3 834,957 + +0.2 834,957 + +0.1 834,958 - +0.3 834,958 - +0.2 835,050 - +1.2 835,050 - +0.0 835,195 + EX31_RS20960 0.20 -0.8 835,195 + EX31_RS20960 0.20 +1.6 835,195 + EX31_RS20960 0.20 -0.3 835,195 + EX31_RS20960 0.20 -0.4 835,196 - EX31_RS20960 0.20 +0.6 835,230 - EX31_RS20960 0.23 +0.3 835,342 - EX31_RS20960 0.35 +0.9 835,534 - EX31_RS20960 0.54 -0.0 835,534 - EX31_RS20960 0.54 -1.2 835,553 + EX31_RS20960 0.56 -0.4 835,553 + EX31_RS20960 0.56 -1.0 835,553 + EX31_RS20960 0.56 +1.0 835,553 + EX31_RS20960 0.56 +0.3 835,553 + EX31_RS20960 0.56 +0.5 835,553 + EX31_RS20960 0.56 -0.3 835,553 + EX31_RS20960 0.56 -0.6 835,554 - EX31_RS20960 0.56 -0.3 835,554 - EX31_RS20960 0.56 +0.3 835,554 - EX31_RS20960 0.56 -1.1 835,554 - EX31_RS20960 0.56 -1.1 835,554 - EX31_RS20960 0.56 -0.3 835,554 - EX31_RS20960 0.56 -0.2 835,554 - EX31_RS20960 0.56 +0.2 835,554 - EX31_RS20960 0.56 -0.2 835,554 - EX31_RS20960 0.56 +0.1 835,554 - EX31_RS20960 0.56 -0.4 835,554 - EX31_RS20960 0.56 -0.0 835,558 - EX31_RS20960 0.57 +0.2
Or see this region's nucleotide sequence