Strain Fitness in Rahnella sp. WP5 around EX31_RS18480

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18475 and EX31_RS18480 are separated by 133 nucleotidesEX31_RS18480 and EX31_RS18485 overlap by 1 nucleotidesEX31_RS18485 and EX31_RS18490 are separated by 69 nucleotides EX31_RS18475: EX31_RS18475 - MFS transporter, at 264,853 to 265,998 _RS18475 EX31_RS18480: EX31_RS18480 - ferredoxin-type protein NapF, at 266,132 to 266,704 _RS18480 EX31_RS18485: EX31_RS18485 - Tat proofreading chaperone DmsD, at 266,704 to 267,312 _RS18485 EX31_RS18490: EX31_RS18490 - dimethyl sulfoxide reductase anchor subunit, at 267,382 to 268,239 _RS18490 Position (kb) 266 267Strain fitness (log2 ratio) -2 -1 0 1at 265.291 kb on + strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.292 kb on - strand, within EX31_RS18475at 265.343 kb on + strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.346 kb on - strand, within EX31_RS18475at 265.371 kb on + strand, within EX31_RS18475at 265.371 kb on + strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.372 kb on - strand, within EX31_RS18475at 265.374 kb on + strand, within EX31_RS18475at 265.375 kb on - strand, within EX31_RS18475at 265.402 kb on - strand, within EX31_RS18475at 265.461 kb on + strand, within EX31_RS18475at 265.461 kb on + strand, within EX31_RS18475at 265.472 kb on - strand, within EX31_RS18475at 265.472 kb on - strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.519 kb on + strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.520 kb on - strand, within EX31_RS18475at 265.526 kb on - strand, within EX31_RS18475at 265.580 kb on + strand, within EX31_RS18475at 265.581 kb on - strand, within EX31_RS18475at 265.581 kb on - strand, within EX31_RS18475at 265.583 kb on + strand, within EX31_RS18475at 265.583 kb on + strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.584 kb on - strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.593 kb on + strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.594 kb on - strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.595 kb on + strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.596 kb on - strand, within EX31_RS18475at 265.640 kb on - strand, within EX31_RS18475at 265.723 kb on + strand, within EX31_RS18475at 265.775 kb on + strand, within EX31_RS18475at 265.775 kb on + strand, within EX31_RS18475at 265.776 kb on - strand, within EX31_RS18475at 265.776 kb on - strand, within EX31_RS18475at 265.778 kb on + strand, within EX31_RS18475at 265.778 kb on + strand, within EX31_RS18475at 265.779 kb on - strand, within EX31_RS18475at 265.804 kb on - strand, within EX31_RS18475at 265.827 kb on + strand, within EX31_RS18475at 265.846 kb on - strand, within EX31_RS18475at 265.851 kb on - strand, within EX31_RS18475at 265.988 kb on + strandat 265.999 kb on - strandat 265.999 kb on - strandat 266.055 kb on + strandat 266.055 kb on + strandat 266.134 kb on - strandat 266.327 kb on - strand, within EX31_RS18480at 266.392 kb on + strand, within EX31_RS18480at 266.392 kb on + strand, within EX31_RS18480at 266.422 kb on - strand, within EX31_RS18480at 266.459 kb on + strand, within EX31_RS18480at 266.459 kb on + strand, within EX31_RS18480at 266.460 kb on - strand, within EX31_RS18480at 266.461 kb on + strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.634 kb on - strand, within EX31_RS18480at 266.677 kb on - strandat 266.679 kb on + strandat 266.680 kb on - strandat 266.680 kb on - strandat 266.680 kb on - strandat 266.711 kb on + strandat 266.712 kb on - strandat 266.712 kb on - strandat 266.739 kb on + strandat 266.739 kb on + strandat 266.739 kb on + strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.761 kb on + strandat 266.761 kb on + strandat 266.762 kb on - strandat 266.780 kb on - strand, within EX31_RS18485at 266.855 kb on - strand, within EX31_RS18485at 267.078 kb on - strand, within EX31_RS18485at 267.217 kb on + strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.226 kb on + strand, within EX31_RS18485at 267.227 kb on - strand, within EX31_RS18485at 267.294 kb on + strandat 267.313 kb on - strandat 267.313 kb on - strandat 267.343 kb on - strandat 267.411 kb on + strandat 267.411 kb on + strandat 267.412 kb on - strandat 267.423 kb on - strandat 267.502 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.579 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.704 kb on - strand, within EX31_RS18490

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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265,291 + EX31_RS18475 0.38 -0.9
265,292 - EX31_RS18475 0.38 +1.3
265,292 - EX31_RS18475 0.38 -0.3
265,292 - EX31_RS18475 0.38 -1.1
265,292 - EX31_RS18475 0.38 +0.1
265,292 - EX31_RS18475 0.38 +0.1
265,292 - EX31_RS18475 0.38 +1.1
265,292 - EX31_RS18475 0.38 +0.0
265,292 - EX31_RS18475 0.38 -0.2
265,343 + EX31_RS18475 0.43 +1.1
265,346 - EX31_RS18475 0.43 +0.2
265,346 - EX31_RS18475 0.43 -1.5
265,346 - EX31_RS18475 0.43 -1.2
265,371 + EX31_RS18475 0.45 -0.7
265,371 + EX31_RS18475 0.45 +0.3
265,372 - EX31_RS18475 0.45 +0.1
265,372 - EX31_RS18475 0.45 +0.6
265,372 - EX31_RS18475 0.45 +0.2
265,374 + EX31_RS18475 0.45 -1.6
265,375 - EX31_RS18475 0.46 +0.2
265,402 - EX31_RS18475 0.48 -0.6
265,461 + EX31_RS18475 0.53 -0.3
265,461 + EX31_RS18475 0.53 -0.1
265,472 - EX31_RS18475 0.54 +0.6
265,472 - EX31_RS18475 0.54 +0.9
265,519 + EX31_RS18475 0.58 +0.1
265,519 + EX31_RS18475 0.58 +0.2
265,519 + EX31_RS18475 0.58 +0.1
265,520 - EX31_RS18475 0.58 +0.5
265,520 - EX31_RS18475 0.58 -0.3
265,520 - EX31_RS18475 0.58 +0.1
265,520 - EX31_RS18475 0.58 -1.1
265,526 - EX31_RS18475 0.59 -0.4
265,580 + EX31_RS18475 0.63 -1.0
265,581 - EX31_RS18475 0.64 +0.4
265,581 - EX31_RS18475 0.64 -0.1
265,583 + EX31_RS18475 0.64 -0.8
265,583 + EX31_RS18475 0.64 +0.4
265,584 - EX31_RS18475 0.64 -0.3
265,584 - EX31_RS18475 0.64 -0.5
265,584 - EX31_RS18475 0.64 +0.2
265,584 - EX31_RS18475 0.64 +0.5
265,584 - EX31_RS18475 0.64 +0.5
265,584 - EX31_RS18475 0.64 -0.8
265,584 - EX31_RS18475 0.64 +0.2
265,584 - EX31_RS18475 0.64 -0.8
265,584 - EX31_RS18475 0.64 -0.0
265,584 - EX31_RS18475 0.64 -0.2
265,593 + EX31_RS18475 0.65 -0.1
265,593 + EX31_RS18475 0.65 -0.4
265,593 + EX31_RS18475 0.65 -2.2
265,594 - EX31_RS18475 0.65 +1.0
265,594 - EX31_RS18475 0.65 -1.4
265,594 - EX31_RS18475 0.65 -0.5
265,595 + EX31_RS18475 0.65 +0.3
265,595 + EX31_RS18475 0.65 -0.6
265,595 + EX31_RS18475 0.65 -1.6
265,595 + EX31_RS18475 0.65 +0.8
265,595 + EX31_RS18475 0.65 +0.6
265,595 + EX31_RS18475 0.65 -0.1
265,596 - EX31_RS18475 0.65 -0.2
265,596 - EX31_RS18475 0.65 +0.6
265,596 - EX31_RS18475 0.65 -0.2
265,596 - EX31_RS18475 0.65 +0.7
265,596 - EX31_RS18475 0.65 +0.8
265,596 - EX31_RS18475 0.65 +0.3
265,596 - EX31_RS18475 0.65 -0.2
265,596 - EX31_RS18475 0.65 -0.1
265,596 - EX31_RS18475 0.65 +0.7
265,596 - EX31_RS18475 0.65 +1.1
265,640 - EX31_RS18475 0.69 +0.4
265,723 + EX31_RS18475 0.76 -0.9
265,775 + EX31_RS18475 0.80 -0.4
265,775 + EX31_RS18475 0.80 -0.1
265,776 - EX31_RS18475 0.81 -1.6
265,776 - EX31_RS18475 0.81 -0.4
265,778 + EX31_RS18475 0.81 +0.6
265,778 + EX31_RS18475 0.81 +0.2
265,779 - EX31_RS18475 0.81 +0.0
265,804 - EX31_RS18475 0.83 +1.3
265,827 + EX31_RS18475 0.85 +0.3
265,846 - EX31_RS18475 0.87 +0.6
265,851 - EX31_RS18475 0.87 -1.1
265,988 + -0.4
265,999 - +0.7
265,999 - +0.0
266,055 + +0.2
266,055 + -0.3
266,134 - +0.1
266,327 - EX31_RS18480 0.34 +0.4
266,392 + EX31_RS18480 0.45 -0.3
266,392 + EX31_RS18480 0.45 -0.7
266,422 - EX31_RS18480 0.51 -0.4
266,459 + EX31_RS18480 0.57 -0.9
266,459 + EX31_RS18480 0.57 -0.7
266,460 - EX31_RS18480 0.57 -1.2
266,461 + EX31_RS18480 0.57 +0.5
266,462 - EX31_RS18480 0.58 -0.6
266,462 - EX31_RS18480 0.58 -0.2
266,462 - EX31_RS18480 0.58 -0.1
266,634 - EX31_RS18480 0.88 +0.2
266,677 - -1.3
266,679 + -0.2
266,680 - -0.8
266,680 - -1.6
266,680 - -0.3
266,711 + -0.2
266,712 - +0.0
266,712 - -0.3
266,739 + +0.3
266,739 + +0.1
266,739 + +0.1
266,740 - +0.0
266,740 - -1.6
266,740 - +0.5
266,740 - -0.5
266,740 - -1.6
266,740 - +0.3
266,761 + +0.4
266,761 + +0.2
266,762 - -0.1
266,780 - EX31_RS18485 0.12 -0.2
266,855 - EX31_RS18485 0.25 +1.0
267,078 - EX31_RS18485 0.61 -0.3
267,217 + EX31_RS18485 0.84 +0.1
267,223 - EX31_RS18485 0.85 +0.2
267,223 - EX31_RS18485 0.85 -0.1
267,223 - EX31_RS18485 0.85 +0.7
267,223 - EX31_RS18485 0.85 +0.7
267,223 - EX31_RS18485 0.85 -0.6
267,226 + EX31_RS18485 0.86 -0.0
267,227 - EX31_RS18485 0.86 -0.2
267,294 + -0.2
267,313 - +0.2
267,313 - -0.9
267,343 - +0.9
267,411 + +1.4
267,411 + +0.5
267,412 - +0.2
267,423 - +0.2
267,502 - EX31_RS18490 0.14 -0.0
267,509 - EX31_RS18490 0.15 -0.3
267,509 - EX31_RS18490 0.15 +0.2
267,509 - EX31_RS18490 0.15 +0.6
267,509 - EX31_RS18490 0.15 +0.0
267,509 - EX31_RS18490 0.15 -0.4
267,509 - EX31_RS18490 0.15 -0.3
267,511 - EX31_RS18490 0.15 +0.3
267,511 - EX31_RS18490 0.15 -0.2
267,511 - EX31_RS18490 0.15 +1.1
267,511 - EX31_RS18490 0.15 +0.3
267,511 - EX31_RS18490 0.15 -1.0
267,511 - EX31_RS18490 0.15 +0.2
267,511 - EX31_RS18490 0.15 +0.3
267,579 - EX31_RS18490 0.23 +1.4
267,661 - EX31_RS18490 0.33 +0.9
267,661 - EX31_RS18490 0.33 -0.3
267,661 - EX31_RS18490 0.33 +0.3
267,704 - EX31_RS18490 0.38 -0.1

Or see this region's nucleotide sequence