Strain Fitness in Rahnella sp. WP5 around EX31_RS17025

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17020 and EX31_RS17025 overlap by 14 nucleotidesEX31_RS17025 and EX31_RS17030 are separated by 307 nucleotides EX31_RS17020: EX31_RS17020 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 14,925 to 16,103 _RS17020 EX31_RS17025: EX31_RS17025 - FadR family transcriptional regulator, at 16,090 to 16,803 _RS17025 EX31_RS17030: EX31_RS17030 - FAD-dependent oxidoreductase, at 17,111 to 18,319 _RS17030 Position (kb) 16 17Strain fitness (log2 ratio) -2 -1 0 1at 15.392 kb on + strand, within EX31_RS17020at 15.392 kb on + strand, within EX31_RS17020at 15.393 kb on - strand, within EX31_RS17020at 15.393 kb on - strand, within EX31_RS17020at 15.395 kb on - strand, within EX31_RS17020at 15.395 kb on - strand, within EX31_RS17020at 15.395 kb on - strand, within EX31_RS17020at 15.395 kb on - strand, within EX31_RS17020at 15.469 kb on + strand, within EX31_RS17020at 15.470 kb on - strand, within EX31_RS17020at 15.562 kb on - strand, within EX31_RS17020at 15.562 kb on - strand, within EX31_RS17020at 15.749 kb on - strand, within EX31_RS17020at 15.973 kb on + strand, within EX31_RS17020at 15.974 kb on - strand, within EX31_RS17020at 16.003 kb on + strandat 16.004 kb on - strandat 16.050 kb on + strandat 16.088 kb on + strandat 16.132 kb on + strandat 16.133 kb on - strandat 16.154 kb on - strandat 16.198 kb on + strand, within EX31_RS17025at 16.277 kb on + strand, within EX31_RS17025at 16.277 kb on + strand, within EX31_RS17025at 16.325 kb on + strand, within EX31_RS17025at 16.405 kb on - strand, within EX31_RS17025at 16.522 kb on - strand, within EX31_RS17025at 16.522 kb on - strand, within EX31_RS17025at 16.724 kb on + strand, within EX31_RS17025at 16.724 kb on + strand, within EX31_RS17025at 16.725 kb on - strand, within EX31_RS17025at 16.725 kb on - strand, within EX31_RS17025at 16.783 kb on + strandat 16.783 kb on + strandat 16.784 kb on - strandat 16.789 kb on + strandat 16.790 kb on - strandat 16.790 kb on - strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.033 kb on + strandat 17.179 kb on - strandat 17.189 kb on + strandat 17.281 kb on + strand, within EX31_RS17030at 17.282 kb on - strand, within EX31_RS17030at 17.425 kb on + strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.537 kb on - strand, within EX31_RS17030at 17.688 kb on + strand, within EX31_RS17030

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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15,392 + EX31_RS17020 0.40 -0.0
15,392 + EX31_RS17020 0.40 -1.2
15,393 - EX31_RS17020 0.40 +0.4
15,393 - EX31_RS17020 0.40 -0.0
15,395 - EX31_RS17020 0.40 +0.9
15,395 - EX31_RS17020 0.40 +0.8
15,395 - EX31_RS17020 0.40 +1.0
15,395 - EX31_RS17020 0.40 +0.6
15,469 + EX31_RS17020 0.46 +1.3
15,470 - EX31_RS17020 0.46 +0.6
15,562 - EX31_RS17020 0.54 +0.0
15,562 - EX31_RS17020 0.54 +0.2
15,749 - EX31_RS17020 0.70 +0.4
15,973 + EX31_RS17020 0.89 -0.4
15,974 - EX31_RS17020 0.89 -0.3
16,003 + -1.1
16,004 - -1.3
16,050 + -0.3
16,088 + +0.6
16,132 + -0.6
16,133 - -0.2
16,154 - +0.2
16,198 + EX31_RS17025 0.15 -0.3
16,277 + EX31_RS17025 0.26 +1.0
16,277 + EX31_RS17025 0.26 -1.1
16,325 + EX31_RS17025 0.33 +0.3
16,405 - EX31_RS17025 0.44 -1.6
16,522 - EX31_RS17025 0.61 -0.1
16,522 - EX31_RS17025 0.61 -1.1
16,724 + EX31_RS17025 0.89 +0.8
16,724 + EX31_RS17025 0.89 +0.3
16,725 - EX31_RS17025 0.89 -0.4
16,725 - EX31_RS17025 0.89 -0.9
16,783 + -0.8
16,783 + +0.4
16,784 - +0.1
16,789 + -0.3
16,790 - -0.8
16,790 - +0.9
17,033 + -1.1
17,033 + +0.0
17,033 + -0.0
17,033 + +0.3
17,033 + +0.8
17,179 - -0.5
17,189 + -2.2
17,281 + EX31_RS17030 0.14 +1.5
17,282 - EX31_RS17030 0.14 +0.5
17,425 + EX31_RS17030 0.26 -0.2
17,537 - EX31_RS17030 0.35 +1.0
17,537 - EX31_RS17030 0.35 -0.9
17,537 - EX31_RS17030 0.35 +0.1
17,688 + EX31_RS17030 0.48 +0.2

Or see this region's nucleotide sequence