Strain Fitness in Rahnella sp. WP5 around EX31_RS16955

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16955 and EX31_RS16960 are separated by 17 nucleotides EX31_RS16955: EX31_RS16955 - ABC transporter ATP-binding protein, at 186 to 935 _RS16955 EX31_RS16960: EX31_RS16960 - ABC transporter substrate-binding protein, at 953 to 1,954 _RS16960 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.083 kb on + strandat 0.083 kb on + strandat 0.156 kb on + strandat 0.157 kb on - strandat 0.157 kb on - strandat 0.157 kb on - strandat 0.157 kb on - strandat 0.157 kb on - strandat 0.159 kb on + strandat 0.176 kb on - strandat 0.178 kb on + strandat 0.178 kb on + strandat 0.178 kb on + strandat 0.178 kb on + strandat 0.179 kb on - strandat 0.307 kb on + strand, within EX31_RS16955at 0.308 kb on - strand, within EX31_RS16955at 0.391 kb on + strand, within EX31_RS16955at 0.392 kb on - strand, within EX31_RS16955at 0.499 kb on - strand, within EX31_RS16955at 0.574 kb on + strand, within EX31_RS16955at 0.814 kb on - strand, within EX31_RS16955at 0.814 kb on - strand, within EX31_RS16955at 0.814 kb on - strand, within EX31_RS16955at 0.814 kb on - strand, within EX31_RS16955at 1.074 kb on - strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.218 kb on + strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.219 kb on - strand, within EX31_RS16960at 1.222 kb on + strand, within EX31_RS16960at 1.222 kb on + strand, within EX31_RS16960at 1.223 kb on - strand, within EX31_RS16960at 1.328 kb on + strand, within EX31_RS16960at 1.331 kb on + strand, within EX31_RS16960at 1.331 kb on + strand, within EX31_RS16960at 1.332 kb on - strand, within EX31_RS16960at 1.414 kb on - strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.634 kb on + strand, within EX31_RS16960at 1.635 kb on - strand, within EX31_RS16960at 1.643 kb on + strand, within EX31_RS16960at 1.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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83 + -0.1
83 + -1.5
156 + -0.5
157 - -0.3
157 - +0.6
157 - -1.6
157 - -0.2
157 - -0.1
159 + +0.1
176 - -0.1
178 + +1.6
178 + -0.4
178 + -0.0
178 + +0.6
179 - -0.6
307 + EX31_RS16955 0.16 +0.5
308 - EX31_RS16955 0.16 -0.9
391 + EX31_RS16955 0.27 +0.0
392 - EX31_RS16955 0.27 -0.5
499 - EX31_RS16955 0.42 -1.4
574 + EX31_RS16955 0.52 -0.6
814 - EX31_RS16955 0.84 -0.3
814 - EX31_RS16955 0.84 -0.9
814 - EX31_RS16955 0.84 +1.0
814 - EX31_RS16955 0.84 +0.3
1,074 - EX31_RS16960 0.12 +1.6
1,218 + EX31_RS16960 0.26 +0.2
1,218 + EX31_RS16960 0.26 -0.1
1,218 + EX31_RS16960 0.26 +0.3
1,218 + EX31_RS16960 0.26 +0.9
1,219 - EX31_RS16960 0.27 -0.5
1,219 - EX31_RS16960 0.27 -0.8
1,219 - EX31_RS16960 0.27 +1.2
1,222 + EX31_RS16960 0.27 +1.6
1,222 + EX31_RS16960 0.27 -0.0
1,223 - EX31_RS16960 0.27 +0.2
1,328 + EX31_RS16960 0.37 +1.5
1,331 + EX31_RS16960 0.38 +1.0
1,331 + EX31_RS16960 0.38 +1.0
1,332 - EX31_RS16960 0.38 +1.8
1,414 - EX31_RS16960 0.46 +0.0
1,634 + EX31_RS16960 0.68 -0.4
1,634 + EX31_RS16960 0.68 -0.2
1,634 + EX31_RS16960 0.68 +1.6
1,635 - EX31_RS16960 0.68 -2.3
1,643 + EX31_RS16960 0.69 -0.1
1,910 - -0.1

Or see this region's nucleotide sequence