Strain Fitness in Rahnella sp. WP5 around EX31_RS15655

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15650 and EX31_RS15655 are separated by 366 nucleotidesEX31_RS15655 and EX31_RS15660 are separated by 116 nucleotides EX31_RS15650: EX31_RS15650 - HlyD family secretion protein, at 29,490 to 30,836 _RS15650 EX31_RS15655: EX31_RS15655 - hypothetical protein, at 31,203 to 31,394 _RS15655 EX31_RS15660: EX31_RS15660 - TIGR01620 family protein, at 31,511 to 32,578 _RS15660 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.218 kb on + strand, within EX31_RS15650at 30.218 kb on + strand, within EX31_RS15650at 30.241 kb on + strand, within EX31_RS15650at 30.377 kb on + strand, within EX31_RS15650at 30.428 kb on + strand, within EX31_RS15650at 30.449 kb on + strand, within EX31_RS15650at 30.496 kb on - strand, within EX31_RS15650at 30.496 kb on - strand, within EX31_RS15650at 30.535 kb on + strand, within EX31_RS15650at 30.536 kb on - strand, within EX31_RS15650at 30.575 kb on + strand, within EX31_RS15650at 30.576 kb on - strand, within EX31_RS15650at 30.576 kb on - strand, within EX31_RS15650at 30.576 kb on - strand, within EX31_RS15650at 30.628 kb on + strand, within EX31_RS15650at 30.629 kb on - strand, within EX31_RS15650at 30.629 kb on - strand, within EX31_RS15650at 30.629 kb on - strand, within EX31_RS15650at 30.655 kb on - strand, within EX31_RS15650at 30.756 kb on + strandat 30.776 kb on + strandat 30.776 kb on + strandat 30.780 kb on + strandat 30.836 kb on + strandat 30.836 kb on + strandat 30.837 kb on - strandat 30.883 kb on + strandat 30.884 kb on - strandat 31.032 kb on + strandat 31.046 kb on + strandat 31.054 kb on + strandat 31.126 kb on + strandat 31.126 kb on + strandat 31.268 kb on + strand, within EX31_RS15655at 31.322 kb on + strand, within EX31_RS15655at 31.342 kb on - strand, within EX31_RS15655at 31.380 kb on + strandat 31.380 kb on + strandat 31.380 kb on + strandat 31.393 kb on - strandat 31.393 kb on - strandat 31.399 kb on - strandat 31.432 kb on - strandat 31.451 kb on + strandat 31.454 kb on + strandat 31.454 kb on + strandat 31.454 kb on + strandat 31.454 kb on + strandat 31.455 kb on - strandat 31.601 kb on - strandat 31.781 kb on - strand, within EX31_RS15660at 31.818 kb on + strand, within EX31_RS15660at 31.819 kb on - strand, within EX31_RS15660at 31.821 kb on + strand, within EX31_RS15660at 31.839 kb on + strand, within EX31_RS15660at 31.839 kb on + strand, within EX31_RS15660at 32.004 kb on + strand, within EX31_RS15660at 32.004 kb on + strand, within EX31_RS15660at 32.005 kb on - strand, within EX31_RS15660at 32.005 kb on - strand, within EX31_RS15660at 32.117 kb on + strand, within EX31_RS15660at 32.118 kb on - strand, within EX31_RS15660at 32.118 kb on - strand, within EX31_RS15660at 32.118 kb on - strand, within EX31_RS15660at 32.197 kb on - strand, within EX31_RS15660at 32.197 kb on - strand, within EX31_RS15660at 32.307 kb on - strand, within EX31_RS15660at 32.307 kb on - strand, within EX31_RS15660

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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30,218 + EX31_RS15650 0.54 -1.2
30,218 + EX31_RS15650 0.54 -1.7
30,241 + EX31_RS15650 0.56 +0.0
30,377 + EX31_RS15650 0.66 +0.1
30,428 + EX31_RS15650 0.70 -0.6
30,449 + EX31_RS15650 0.71 -0.2
30,496 - EX31_RS15650 0.75 -0.7
30,496 - EX31_RS15650 0.75 -0.6
30,535 + EX31_RS15650 0.78 -1.3
30,536 - EX31_RS15650 0.78 +0.3
30,575 + EX31_RS15650 0.81 -1.5
30,576 - EX31_RS15650 0.81 +1.6
30,576 - EX31_RS15650 0.81 -0.3
30,576 - EX31_RS15650 0.81 +0.4
30,628 + EX31_RS15650 0.84 -0.1
30,629 - EX31_RS15650 0.85 -0.5
30,629 - EX31_RS15650 0.85 -0.3
30,629 - EX31_RS15650 0.85 +0.7
30,655 - EX31_RS15650 0.86 +0.6
30,756 + -0.6
30,776 + +0.1
30,776 + +0.1
30,780 + +0.6
30,836 + -2.1
30,836 + +0.3
30,837 - +0.4
30,883 + -1.1
30,884 - +1.0
31,032 + +0.4
31,046 + +0.6
31,054 + -0.9
31,126 + +0.1
31,126 + +0.4
31,268 + EX31_RS15655 0.34 -1.3
31,322 + EX31_RS15655 0.62 -0.6
31,342 - EX31_RS15655 0.72 -0.2
31,380 + -0.2
31,380 + -0.1
31,380 + +0.1
31,393 - -1.3
31,393 - -0.4
31,399 - +1.0
31,432 - -0.6
31,451 + -0.7
31,454 + -0.4
31,454 + +0.1
31,454 + +0.2
31,454 + +0.5
31,455 - +0.4
31,601 - -0.1
31,781 - EX31_RS15660 0.25 +0.8
31,818 + EX31_RS15660 0.29 +0.4
31,819 - EX31_RS15660 0.29 -0.2
31,821 + EX31_RS15660 0.29 +1.9
31,839 + EX31_RS15660 0.31 +0.4
31,839 + EX31_RS15660 0.31 +0.9
32,004 + EX31_RS15660 0.46 +0.2
32,004 + EX31_RS15660 0.46 -1.2
32,005 - EX31_RS15660 0.46 +1.4
32,005 - EX31_RS15660 0.46 +0.2
32,117 + EX31_RS15660 0.57 +0.6
32,118 - EX31_RS15660 0.57 -0.2
32,118 - EX31_RS15660 0.57 +0.4
32,118 - EX31_RS15660 0.57 -0.3
32,197 - EX31_RS15660 0.64 -0.1
32,197 - EX31_RS15660 0.64 +0.7
32,307 - EX31_RS15660 0.75 -0.4
32,307 - EX31_RS15660 0.75 -0.1

Or see this region's nucleotide sequence