Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14025 and EX31_RS14030 are separated by 19 nucleotides EX31_RS14030 and EX31_RS14035 are separated by 73 nucleotides
EX31_RS14025: EX31_RS14025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 69,756 to 70,505
_RS14025
EX31_RS14030: EX31_RS14030 - glutathione peroxidase, at 70,525 to 71,076
_RS14030
EX31_RS14035: EX31_RS14035 - vitamin B12 ABC transporter permease BtuC, at 71,150 to 72,157
_RS14035
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.527 kb on + strand at 69.725 kb on - strand at 69.728 kb on - strand at 69.728 kb on - strand at 69.730 kb on + strand at 69.730 kb on + strand at 69.731 kb on - strand at 69.737 kb on - strand at 69.815 kb on - strand at 69.829 kb on - strand at 69.887 kb on + strand, within EX31_RS14025 at 69.887 kb on + strand, within EX31_RS14025 at 69.888 kb on - strand, within EX31_RS14025 at 69.888 kb on - strand, within EX31_RS14025 at 70.049 kb on + strand, within EX31_RS14025 at 70.080 kb on + strand, within EX31_RS14025 at 70.161 kb on + strand, within EX31_RS14025 at 70.161 kb on + strand, within EX31_RS14025 at 70.162 kb on - strand, within EX31_RS14025 at 70.162 kb on - strand, within EX31_RS14025 at 70.162 kb on - strand, within EX31_RS14025 at 70.162 kb on - strand, within EX31_RS14025 at 70.281 kb on + strand, within EX31_RS14025 at 70.371 kb on - strand, within EX31_RS14025 at 70.424 kb on + strand, within EX31_RS14025 at 70.662 kb on + strand, within EX31_RS14030 at 70.929 kb on - strand, within EX31_RS14030 at 70.932 kb on + strand, within EX31_RS14030 at 70.933 kb on - strand, within EX31_RS14030 at 70.949 kb on + strand, within EX31_RS14030 at 70.950 kb on - strand, within EX31_RS14030 at 70.950 kb on - strand, within EX31_RS14030 at 70.950 kb on - strand, within EX31_RS14030 at 70.996 kb on + strand, within EX31_RS14030 at 71.007 kb on + strand, within EX31_RS14030 at 71.007 kb on + strand, within EX31_RS14030 at 71.007 kb on + strand, within EX31_RS14030 at 71.008 kb on - strand, within EX31_RS14030 at 71.008 kb on - strand, within EX31_RS14030 at 71.010 kb on - strand, within EX31_RS14030 at 71.041 kb on - strand at 71.055 kb on + strand at 71.055 kb on + strand at 71.055 kb on + strand at 71.061 kb on - strand at 71.071 kb on - strand at 71.097 kb on + strand at 71.103 kb on - strand at 71.229 kb on - strand at 71.261 kb on + strand, within EX31_RS14035 at 71.262 kb on - strand, within EX31_RS14035 at 71.276 kb on + strand, within EX31_RS14035 at 71.277 kb on - strand, within EX31_RS14035 at 71.438 kb on - strand, within EX31_RS14035 at 71.439 kb on + strand, within EX31_RS14035 at 71.459 kb on + strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.535 kb on - strand, within EX31_RS14035 at 71.607 kb on + strand, within EX31_RS14035 at 71.607 kb on + strand, within EX31_RS14035 at 71.608 kb on - strand, within EX31_RS14035 at 71.644 kb on - strand, within EX31_RS14035 at 71.660 kb on + strand, within EX31_RS14035 at 71.661 kb on - strand, within EX31_RS14035 at 71.661 kb on - strand, within EX31_RS14035 at 71.683 kb on + strand, within EX31_RS14035 at 71.684 kb on - strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.742 kb on - strand, within EX31_RS14035 at 71.820 kb on - strand, within EX31_RS14035 at 71.820 kb on - strand, within EX31_RS14035 at 71.831 kb on + strand, within EX31_RS14035 at 71.832 kb on - strand, within EX31_RS14035 at 71.832 kb on - strand, within EX31_RS14035 at 71.871 kb on - strand, within EX31_RS14035
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 69,527 + -1.7 69,725 - -0.6 69,728 - +1.0 69,728 - -0.2 69,730 + -0.7 69,730 + -0.6 69,731 - +0.0 69,737 - +0.4 69,815 - -0.8 69,829 - +0.2 69,887 + EX31_RS14025 0.17 +0.2 69,887 + EX31_RS14025 0.17 +1.6 69,888 - EX31_RS14025 0.18 +0.0 69,888 - EX31_RS14025 0.18 -0.1 70,049 + EX31_RS14025 0.39 -0.4 70,080 + EX31_RS14025 0.43 -0.4 70,161 + EX31_RS14025 0.54 +0.1 70,161 + EX31_RS14025 0.54 -0.0 70,162 - EX31_RS14025 0.54 -0.2 70,162 - EX31_RS14025 0.54 +0.8 70,162 - EX31_RS14025 0.54 +0.8 70,162 - EX31_RS14025 0.54 +0.4 70,281 + EX31_RS14025 0.70 -0.8 70,371 - EX31_RS14025 0.82 +0.8 70,424 + EX31_RS14025 0.89 -1.0 70,662 + EX31_RS14030 0.25 -1.4 70,929 - EX31_RS14030 0.73 -1.5 70,932 + EX31_RS14030 0.74 -0.9 70,933 - EX31_RS14030 0.74 -0.8 70,949 + EX31_RS14030 0.77 -0.6 70,950 - EX31_RS14030 0.77 -0.7 70,950 - EX31_RS14030 0.77 -0.0 70,950 - EX31_RS14030 0.77 -0.9 70,996 + EX31_RS14030 0.85 -0.8 71,007 + EX31_RS14030 0.87 +0.8 71,007 + EX31_RS14030 0.87 -0.0 71,007 + EX31_RS14030 0.87 -0.4 71,008 - EX31_RS14030 0.88 -0.5 71,008 - EX31_RS14030 0.88 +0.4 71,010 - EX31_RS14030 0.88 -1.2 71,041 - +0.8 71,055 + -0.8 71,055 + -0.2 71,055 + -1.1 71,061 - +1.2 71,071 - -0.1 71,097 + +0.3 71,103 - -2.6 71,229 - +1.0 71,261 + EX31_RS14035 0.11 -0.6 71,262 - EX31_RS14035 0.11 -1.3 71,276 + EX31_RS14035 0.12 -1.5 71,277 - EX31_RS14035 0.13 +1.9 71,438 - EX31_RS14035 0.29 +0.4 71,439 + EX31_RS14035 0.29 -0.8 71,459 + EX31_RS14035 0.31 -0.8 71,499 - EX31_RS14035 0.35 -0.9 71,499 - EX31_RS14035 0.35 -0.2 71,499 - EX31_RS14035 0.35 -0.6 71,499 - EX31_RS14035 0.35 +1.0 71,499 - EX31_RS14035 0.35 +0.0 71,535 - EX31_RS14035 0.38 -1.4 71,607 + EX31_RS14035 0.45 +0.7 71,607 + EX31_RS14035 0.45 +0.2 71,608 - EX31_RS14035 0.45 -0.4 71,644 - EX31_RS14035 0.49 +0.2 71,660 + EX31_RS14035 0.51 +0.4 71,661 - EX31_RS14035 0.51 +0.2 71,661 - EX31_RS14035 0.51 -0.3 71,683 + EX31_RS14035 0.53 -1.0 71,684 - EX31_RS14035 0.53 +0.1 71,737 + EX31_RS14035 0.58 -0.3 71,737 + EX31_RS14035 0.58 +0.0 71,737 + EX31_RS14035 0.58 -0.2 71,737 + EX31_RS14035 0.58 +0.2 71,737 + EX31_RS14035 0.58 +0.5 71,738 - EX31_RS14035 0.58 +0.1 71,738 - EX31_RS14035 0.58 +0.1 71,738 - EX31_RS14035 0.58 -0.3 71,738 - EX31_RS14035 0.58 -0.2 71,738 - EX31_RS14035 0.58 -0.3 71,738 - EX31_RS14035 0.58 -0.8 71,738 - EX31_RS14035 0.58 +1.2 71,739 + EX31_RS14035 0.58 -0.7 71,739 + EX31_RS14035 0.58 +0.2 71,739 + EX31_RS14035 0.58 +0.0 71,740 - EX31_RS14035 0.59 +0.1 71,740 - EX31_RS14035 0.59 +0.6 71,740 - EX31_RS14035 0.59 -0.9 71,740 - EX31_RS14035 0.59 -0.5 71,740 - EX31_RS14035 0.59 -0.3 71,740 - EX31_RS14035 0.59 -0.1 71,740 - EX31_RS14035 0.59 -1.5 71,740 - EX31_RS14035 0.59 +1.0 71,741 + EX31_RS14035 0.59 -1.5 71,741 + EX31_RS14035 0.59 -0.9 71,741 + EX31_RS14035 0.59 -0.6 71,741 + EX31_RS14035 0.59 -0.1 71,742 - EX31_RS14035 0.59 -1.3 71,820 - EX31_RS14035 0.66 -0.1 71,820 - EX31_RS14035 0.66 -0.3 71,831 + EX31_RS14035 0.68 +0.0 71,832 - EX31_RS14035 0.68 +0.4 71,832 - EX31_RS14035 0.68 -0.3 71,871 - EX31_RS14035 0.72 -0.8
Or see this region's nucleotide sequence