Strain Fitness in Rahnella sp. WP5 around EX31_RS10795

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10790 and EX31_RS10795 are separated by 279 nucleotidesEX31_RS10795 and EX31_RS10800 overlap by 4 nucleotides EX31_RS10790: EX31_RS10790 - cation diffusion facilitator family transporter, at 77,911 to 78,822 _RS10790 EX31_RS10795: EX31_RS10795 - HlyD family secretion protein, at 79,102 to 80,292 _RS10795 EX31_RS10800: EX31_RS10800 - DHA2 family efflux MFS transporter permease subunit, at 80,289 to 81,857 _RS10800 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.119 kb on - strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.142 kb on + strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.143 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.244 kb on - strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.245 kb on + strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.246 kb on - strand, within EX31_RS10790at 78.297 kb on - strand, within EX31_RS10790at 78.330 kb on + strand, within EX31_RS10790at 78.353 kb on + strand, within EX31_RS10790at 78.353 kb on + strand, within EX31_RS10790at 78.354 kb on - strand, within EX31_RS10790at 78.404 kb on + strand, within EX31_RS10790at 78.404 kb on + strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.405 kb on - strand, within EX31_RS10790at 78.463 kb on - strand, within EX31_RS10790at 78.559 kb on + strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.665 kb on - strand, within EX31_RS10790at 78.784 kb on - strandat 78.784 kb on - strandat 78.784 kb on - strandat 78.784 kb on - strandat 78.784 kb on - strandat 78.784 kb on - strandat 78.799 kb on - strandat 78.799 kb on - strandat 78.800 kb on + strandat 78.800 kb on + strandat 78.800 kb on + strandat 78.800 kb on + strandat 78.800 kb on + strandat 78.801 kb on - strandat 78.801 kb on - strandat 78.801 kb on - strandat 78.894 kb on - strandat 78.910 kb on + strandat 78.911 kb on - strandat 78.924 kb on + strandat 78.924 kb on + strandat 78.924 kb on + strandat 78.924 kb on + strandat 78.925 kb on - strandat 78.925 kb on - strandat 78.944 kb on + strandat 78.956 kb on + strandat 79.003 kb on + strandat 79.014 kb on - strandat 79.014 kb on - strandat 79.021 kb on + strandat 79.022 kb on - strandat 79.028 kb on + strandat 79.101 kb on + strandat 79.101 kb on + strandat 79.149 kb on + strandat 79.173 kb on - strandat 79.173 kb on - strandat 79.230 kb on + strand, within EX31_RS10795at 79.230 kb on + strand, within EX31_RS10795at 79.414 kb on + strand, within EX31_RS10795at 79.415 kb on - strand, within EX31_RS10795at 79.440 kb on + strand, within EX31_RS10795at 79.467 kb on - strand, within EX31_RS10795at 79.567 kb on + strand, within EX31_RS10795at 79.601 kb on + strand, within EX31_RS10795at 79.601 kb on + strand, within EX31_RS10795at 79.602 kb on - strand, within EX31_RS10795at 79.602 kb on - strand, within EX31_RS10795at 79.683 kb on - strand, within EX31_RS10795at 79.710 kb on + strand, within EX31_RS10795at 79.710 kb on + strand, within EX31_RS10795at 79.716 kb on + strand, within EX31_RS10795at 79.716 kb on + strand, within EX31_RS10795at 79.716 kb on + strand, within EX31_RS10795at 79.717 kb on - strand, within EX31_RS10795at 79.793 kb on + strand, within EX31_RS10795at 79.794 kb on - strand, within EX31_RS10795at 79.895 kb on - strand, within EX31_RS10795at 79.924 kb on + strand, within EX31_RS10795at 79.938 kb on + strand, within EX31_RS10795at 79.938 kb on + strand, within EX31_RS10795at 80.179 kb on + strandat 80.180 kb on - strandat 80.180 kb on - strandat 80.388 kb on - strandat 80.437 kb on - strandat 80.467 kb on - strand, within EX31_RS10800at 80.535 kb on + strand, within EX31_RS10800at 80.735 kb on + strand, within EX31_RS10800at 80.735 kb on + strand, within EX31_RS10800at 80.783 kb on + strand, within EX31_RS10800at 80.783 kb on + strand, within EX31_RS10800at 80.817 kb on - strand, within EX31_RS10800at 80.850 kb on + strand, within EX31_RS10800at 80.851 kb on - strand, within EX31_RS10800at 80.910 kb on + strand, within EX31_RS10800at 80.910 kb on + strand, within EX31_RS10800at 80.911 kb on - strand, within EX31_RS10800at 80.911 kb on - strand, within EX31_RS10800at 80.950 kb on + strand, within EX31_RS10800at 80.950 kb on + strand, within EX31_RS10800at 81.063 kb on + strand, within EX31_RS10800at 81.063 kb on + strand, within EX31_RS10800at 81.063 kb on + strand, within EX31_RS10800at 81.064 kb on - strand, within EX31_RS10800at 81.095 kb on + strand, within EX31_RS10800at 81.096 kb on - strand, within EX31_RS10800at 81.127 kb on + strand, within EX31_RS10800

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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78,119 - EX31_RS10790 0.23 -1.5
78,119 - EX31_RS10790 0.23 +0.1
78,119 - EX31_RS10790 0.23 +0.3
78,119 - EX31_RS10790 0.23 -1.4
78,142 + EX31_RS10790 0.25 +0.7
78,142 + EX31_RS10790 0.25 -0.0
78,142 + EX31_RS10790 0.25 +0.6
78,143 - EX31_RS10790 0.25 -0.1
78,143 - EX31_RS10790 0.25 +0.3
78,143 - EX31_RS10790 0.25 +0.6
78,143 - EX31_RS10790 0.25 +1.0
78,143 - EX31_RS10790 0.25 -0.5
78,143 - EX31_RS10790 0.25 +0.9
78,143 - EX31_RS10790 0.25 -0.9
78,143 - EX31_RS10790 0.25 +0.5
78,143 - EX31_RS10790 0.25 -0.4
78,143 - EX31_RS10790 0.25 -0.5
78,244 - EX31_RS10790 0.37 -0.1
78,244 - EX31_RS10790 0.37 +0.1
78,244 - EX31_RS10790 0.37 +0.1
78,244 - EX31_RS10790 0.37 +0.1
78,244 - EX31_RS10790 0.37 -0.7
78,244 - EX31_RS10790 0.37 +0.7
78,244 - EX31_RS10790 0.37 +0.1
78,245 + EX31_RS10790 0.37 +0.3
78,245 + EX31_RS10790 0.37 -1.6
78,245 + EX31_RS10790 0.37 -0.0
78,246 - EX31_RS10790 0.37 -1.5
78,246 - EX31_RS10790 0.37 +0.2
78,246 - EX31_RS10790 0.37 -0.9
78,246 - EX31_RS10790 0.37 +0.2
78,297 - EX31_RS10790 0.42 +0.8
78,330 + EX31_RS10790 0.46 -1.0
78,353 + EX31_RS10790 0.48 -0.2
78,353 + EX31_RS10790 0.48 +1.1
78,354 - EX31_RS10790 0.49 -1.3
78,404 + EX31_RS10790 0.54 +0.2
78,404 + EX31_RS10790 0.54 +0.0
78,405 - EX31_RS10790 0.54 -0.2
78,405 - EX31_RS10790 0.54 +0.5
78,405 - EX31_RS10790 0.54 +0.3
78,405 - EX31_RS10790 0.54 +0.5
78,463 - EX31_RS10790 0.61 -0.2
78,559 + EX31_RS10790 0.71 -1.4
78,665 - EX31_RS10790 0.83 -2.0
78,665 - EX31_RS10790 0.83 -0.0
78,665 - EX31_RS10790 0.83 -0.4
78,665 - EX31_RS10790 0.83 -0.2
78,784 - +0.6
78,784 - +0.8
78,784 - -0.1
78,784 - -0.5
78,784 - -0.5
78,784 - +1.0
78,799 - -0.1
78,799 - -0.7
78,800 + +2.6
78,800 + +0.6
78,800 + +1.3
78,800 + +0.0
78,800 + +1.3
78,801 - +0.7
78,801 - +0.3
78,801 - -0.4
78,894 - +1.4
78,910 + +0.1
78,911 - -0.7
78,924 + -1.0
78,924 + -0.6
78,924 + -0.1
78,924 + +0.4
78,925 - -1.6
78,925 - -0.7
78,944 + -1.5
78,956 + +0.9
79,003 + +1.0
79,014 - +0.7
79,014 - +0.2
79,021 + -0.4
79,022 - -0.2
79,028 + +0.3
79,101 + -0.2
79,101 + -0.7
79,149 + +0.5
79,173 - +0.3
79,173 - +0.2
79,230 + EX31_RS10795 0.11 -0.9
79,230 + EX31_RS10795 0.11 -0.5
79,414 + EX31_RS10795 0.26 +1.2
79,415 - EX31_RS10795 0.26 +0.4
79,440 + EX31_RS10795 0.28 -0.9
79,467 - EX31_RS10795 0.31 -0.7
79,567 + EX31_RS10795 0.39 -0.7
79,601 + EX31_RS10795 0.42 +0.0
79,601 + EX31_RS10795 0.42 -0.5
79,602 - EX31_RS10795 0.42 +0.8
79,602 - EX31_RS10795 0.42 -0.6
79,683 - EX31_RS10795 0.49 -0.8
79,710 + EX31_RS10795 0.51 +0.0
79,710 + EX31_RS10795 0.51 -0.1
79,716 + EX31_RS10795 0.52 +0.2
79,716 + EX31_RS10795 0.52 +0.1
79,716 + EX31_RS10795 0.52 -0.7
79,717 - EX31_RS10795 0.52 -1.0
79,793 + EX31_RS10795 0.58 +0.7
79,794 - EX31_RS10795 0.58 +0.0
79,895 - EX31_RS10795 0.67 -0.6
79,924 + EX31_RS10795 0.69 -1.9
79,938 + EX31_RS10795 0.70 -1.0
79,938 + EX31_RS10795 0.70 -0.4
80,179 + -0.3
80,180 - -0.2
80,180 - +0.8
80,388 - +0.5
80,437 - -0.2
80,467 - EX31_RS10800 0.11 -0.3
80,535 + EX31_RS10800 0.16 -0.7
80,735 + EX31_RS10800 0.28 -1.4
80,735 + EX31_RS10800 0.28 +0.2
80,783 + EX31_RS10800 0.31 -2.4
80,783 + EX31_RS10800 0.31 +0.4
80,817 - EX31_RS10800 0.34 +0.1
80,850 + EX31_RS10800 0.36 +0.0
80,851 - EX31_RS10800 0.36 -1.4
80,910 + EX31_RS10800 0.40 +0.1
80,910 + EX31_RS10800 0.40 +0.2
80,911 - EX31_RS10800 0.40 +0.1
80,911 - EX31_RS10800 0.40 -0.3
80,950 + EX31_RS10800 0.42 -2.4
80,950 + EX31_RS10800 0.42 +0.7
81,063 + EX31_RS10800 0.49 +0.4
81,063 + EX31_RS10800 0.49 +0.1
81,063 + EX31_RS10800 0.49 +0.3
81,064 - EX31_RS10800 0.49 -0.8
81,095 + EX31_RS10800 0.51 -0.4
81,096 - EX31_RS10800 0.51 +0.3
81,127 + EX31_RS10800 0.53 +0.3

Or see this region's nucleotide sequence