Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09305 and EX31_RS09310 overlap by 4 nucleotides EX31_RS09310 and EX31_RS09315 overlap by 1 nucleotides EX31_RS09315 and EX31_RS09320 overlap by 4 nucleotides
EX31_RS09305: EX31_RS09305 - respiratory nitrate reductase subunit gamma, at 61,103 to 61,783
_RS09305
EX31_RS09310: EX31_RS09310 - nitrate reductase molybdenum cofactor assembly chaperone, at 61,780 to 62,502
_RS09310
EX31_RS09315: EX31_RS09315 - nitrate reductase subunit beta, at 62,502 to 64,037
_RS09315
EX31_RS09320: EX31_RS09320 - nitrate reductase subunit alpha, at 64,034 to 67,798
_RS09320
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 61.551 kb on + strand, within EX31_RS09305 at 61.551 kb on + strand, within EX31_RS09305 at 61.551 kb on + strand, within EX31_RS09305 at 61.551 kb on + strand, within EX31_RS09305 at 61.551 kb on + strand, within EX31_RS09305 at 61.552 kb on - strand, within EX31_RS09305 at 61.552 kb on - strand, within EX31_RS09305 at 61.693 kb on - strand, within EX31_RS09305 at 61.741 kb on - strand at 61.747 kb on - strand at 61.747 kb on - strand at 61.747 kb on - strand at 61.824 kb on - strand at 62.145 kb on - strand, within EX31_RS09310 at 62.153 kb on + strand, within EX31_RS09310 at 62.165 kb on + strand, within EX31_RS09310 at 62.318 kb on + strand, within EX31_RS09310 at 62.366 kb on + strand, within EX31_RS09310 at 62.366 kb on + strand, within EX31_RS09310 at 62.366 kb on + strand, within EX31_RS09310 at 62.367 kb on - strand, within EX31_RS09310 at 62.367 kb on - strand, within EX31_RS09310 at 62.367 kb on - strand, within EX31_RS09310 at 62.476 kb on + strand at 62.491 kb on + strand at 62.491 kb on + strand at 62.491 kb on + strand at 62.492 kb on - strand at 62.553 kb on - strand at 62.687 kb on - strand, within EX31_RS09315 at 62.705 kb on - strand, within EX31_RS09315 at 62.816 kb on + strand, within EX31_RS09315 at 62.817 kb on - strand, within EX31_RS09315 at 62.817 kb on - strand, within EX31_RS09315 at 62.977 kb on + strand, within EX31_RS09315 at 62.977 kb on + strand, within EX31_RS09315 at 62.978 kb on - strand, within EX31_RS09315 at 63.146 kb on + strand, within EX31_RS09315 at 63.146 kb on + strand, within EX31_RS09315 at 63.163 kb on + strand, within EX31_RS09315 at 63.164 kb on - strand, within EX31_RS09315 at 63.217 kb on + strand, within EX31_RS09315 at 63.217 kb on + strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.356 kb on - strand, within EX31_RS09315 at 63.436 kb on + strand, within EX31_RS09315 at 63.736 kb on + strand, within EX31_RS09315 at 63.740 kb on - strand, within EX31_RS09315 at 63.740 kb on - strand, within EX31_RS09315 at 63.959 kb on + strand at 64.071 kb on + strand at 64.072 kb on - strand at 64.158 kb on + strand at 64.161 kb on + strand at 64.162 kb on - strand at 64.244 kb on - strand at 64.305 kb on + strand at 64.305 kb on + strand at 64.305 kb on + strand at 64.306 kb on - strand at 64.460 kb on + strand, within EX31_RS09320 at 64.460 kb on + strand, within EX31_RS09320 at 64.461 kb on - strand, within EX31_RS09320 at 64.461 kb on - strand, within EX31_RS09320 at 64.488 kb on + strand, within EX31_RS09320 at 64.488 kb on + strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.501 kb on + strand, within EX31_RS09320 at 64.726 kb on - strand, within EX31_RS09320 at 64.996 kb on - strand, within EX31_RS09320
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 61,551 + EX31_RS09305 0.66 -1.8 61,551 + EX31_RS09305 0.66 +0.5 61,551 + EX31_RS09305 0.66 -1.6 61,551 + EX31_RS09305 0.66 -0.8 61,551 + EX31_RS09305 0.66 +0.7 61,552 - EX31_RS09305 0.66 -0.7 61,552 - EX31_RS09305 0.66 -0.1 61,693 - EX31_RS09305 0.87 -0.1 61,741 - +0.2 61,747 - +0.0 61,747 - -0.6 61,747 - -2.0 61,824 - +1.4 62,145 - EX31_RS09310 0.50 +0.8 62,153 + EX31_RS09310 0.52 +1.0 62,165 + EX31_RS09310 0.53 +1.0 62,318 + EX31_RS09310 0.74 -0.5 62,366 + EX31_RS09310 0.81 -0.3 62,366 + EX31_RS09310 0.81 -3.0 62,366 + EX31_RS09310 0.81 +0.6 62,367 - EX31_RS09310 0.81 +0.1 62,367 - EX31_RS09310 0.81 +0.2 62,367 - EX31_RS09310 0.81 -0.5 62,476 + -0.4 62,491 + -0.1 62,491 + -0.2 62,491 + +1.1 62,492 - -0.1 62,553 - +2.2 62,687 - EX31_RS09315 0.12 -0.3 62,705 - EX31_RS09315 0.13 +0.9 62,816 + EX31_RS09315 0.20 -0.6 62,817 - EX31_RS09315 0.21 -1.5 62,817 - EX31_RS09315 0.21 -1.5 62,977 + EX31_RS09315 0.31 +0.6 62,977 + EX31_RS09315 0.31 +1.8 62,978 - EX31_RS09315 0.31 -0.7 63,146 + EX31_RS09315 0.42 -0.3 63,146 + EX31_RS09315 0.42 -0.6 63,163 + EX31_RS09315 0.43 -0.2 63,164 - EX31_RS09315 0.43 -0.1 63,217 + EX31_RS09315 0.47 -0.7 63,217 + EX31_RS09315 0.47 +1.3 63,218 - EX31_RS09315 0.47 -0.2 63,218 - EX31_RS09315 0.47 -0.5 63,218 - EX31_RS09315 0.47 -0.3 63,356 - EX31_RS09315 0.56 -0.2 63,436 + EX31_RS09315 0.61 -0.2 63,736 + EX31_RS09315 0.80 -1.0 63,740 - EX31_RS09315 0.81 -0.9 63,740 - EX31_RS09315 0.81 -0.3 63,959 + -1.0 64,071 + +1.1 64,072 - +0.0 64,158 + -0.7 64,161 + +1.0 64,162 - -0.7 64,244 - -1.0 64,305 + +0.4 64,305 + +0.9 64,305 + -0.6 64,306 - -0.6 64,460 + EX31_RS09320 0.11 +0.4 64,460 + EX31_RS09320 0.11 +1.8 64,461 - EX31_RS09320 0.11 +0.1 64,461 - EX31_RS09320 0.11 -0.3 64,488 + EX31_RS09320 0.12 +0.4 64,488 + EX31_RS09320 0.12 +0.9 64,489 - EX31_RS09320 0.12 +0.4 64,489 - EX31_RS09320 0.12 +0.9 64,489 - EX31_RS09320 0.12 +0.0 64,489 - EX31_RS09320 0.12 -0.5 64,501 + EX31_RS09320 0.12 -1.5 64,726 - EX31_RS09320 0.18 -0.6 64,996 - EX31_RS09320 0.26 -0.2
Or see this region's nucleotide sequence