Strain Fitness in Rahnella sp. WP5 around EX31_RS09270

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09260 and EX31_RS09265 are separated by 30 nucleotidesEX31_RS09265 and EX31_RS09270 overlap by 1 nucleotidesEX31_RS09270 and EX31_RS09275 are separated by 284 nucleotides EX31_RS09260: EX31_RS09260 - ABC transporter ATP-binding protein, at 50,795 to 52,663 _RS09260 EX31_RS09265: EX31_RS09265 - L-Ala-D/L-Glu epimerase, at 52,694 to 53,659 _RS09265 EX31_RS09270: EX31_RS09270 - DUF1611 domain-containing protein, at 53,659 to 54,669 _RS09270 EX31_RS09275: EX31_RS09275 - porin, at 54,954 to 56,033 _RS09275 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.683 kb on - strandat 52.925 kb on - strand, within EX31_RS09265at 52.939 kb on - strand, within EX31_RS09265at 53.318 kb on - strand, within EX31_RS09265at 53.467 kb on + strand, within EX31_RS09265at 53.467 kb on + strand, within EX31_RS09265at 53.468 kb on - strand, within EX31_RS09265at 53.562 kb on + strand, within EX31_RS09265at 53.570 kb on + strandat 53.570 kb on + strandat 53.571 kb on - strandat 53.571 kb on - strandat 53.794 kb on - strand, within EX31_RS09270at 53.904 kb on + strand, within EX31_RS09270at 53.938 kb on + strand, within EX31_RS09270at 53.938 kb on + strand, within EX31_RS09270at 53.939 kb on - strand, within EX31_RS09270at 53.939 kb on - strand, within EX31_RS09270at 53.996 kb on + strand, within EX31_RS09270at 54.204 kb on - strand, within EX31_RS09270at 54.321 kb on + strand, within EX31_RS09270at 54.648 kb on - strandat 54.648 kb on - strandat 54.648 kb on - strandat 54.754 kb on + strandat 54.755 kb on - strandat 54.755 kb on - strandat 54.794 kb on + strandat 54.799 kb on - strandat 54.869 kb on + strandat 54.937 kb on + strandat 54.938 kb on - strandat 54.943 kb on - strandat 54.956 kb on - strandat 54.956 kb on - strandat 54.956 kb on - strandat 54.976 kb on - strandat 54.976 kb on - strandat 55.039 kb on + strandat 55.039 kb on + strandat 55.039 kb on + strandat 55.040 kb on - strandat 55.040 kb on - strandat 55.040 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.049 kb on - strandat 55.054 kb on + strandat 55.054 kb on + strandat 55.054 kb on + strandat 55.054 kb on + strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.055 kb on - strandat 55.073 kb on - strand, within EX31_RS09275at 55.076 kb on - strand, within EX31_RS09275at 55.076 kb on - strand, within EX31_RS09275at 55.096 kb on + strand, within EX31_RS09275at 55.097 kb on - strand, within EX31_RS09275at 55.097 kb on - strand, within EX31_RS09275at 55.143 kb on - strand, within EX31_RS09275at 55.201 kb on - strand, within EX31_RS09275at 55.207 kb on + strand, within EX31_RS09275at 55.228 kb on + strand, within EX31_RS09275at 55.280 kb on - strand, within EX31_RS09275at 55.313 kb on - strand, within EX31_RS09275at 55.382 kb on + strand, within EX31_RS09275at 55.383 kb on - strand, within EX31_RS09275at 55.383 kb on - strand, within EX31_RS09275at 55.406 kb on + strand, within EX31_RS09275at 55.479 kb on - strand, within EX31_RS09275at 55.509 kb on - strand, within EX31_RS09275at 55.571 kb on - strand, within EX31_RS09275at 55.616 kb on + strand, within EX31_RS09275at 55.623 kb on - strand, within EX31_RS09275

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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52,683 - +1.0
52,925 - EX31_RS09265 0.24 +0.4
52,939 - EX31_RS09265 0.25 +0.1
53,318 - EX31_RS09265 0.65 +0.3
53,467 + EX31_RS09265 0.80 -0.4
53,467 + EX31_RS09265 0.80 +0.2
53,468 - EX31_RS09265 0.80 +1.4
53,562 + EX31_RS09265 0.90 -0.7
53,570 + -0.8
53,570 + +0.0
53,571 - -1.7
53,571 - -1.5
53,794 - EX31_RS09270 0.13 +0.7
53,904 + EX31_RS09270 0.24 +0.3
53,938 + EX31_RS09270 0.28 -0.7
53,938 + EX31_RS09270 0.28 -0.9
53,939 - EX31_RS09270 0.28 -0.1
53,939 - EX31_RS09270 0.28 -0.5
53,996 + EX31_RS09270 0.33 -1.3
54,204 - EX31_RS09270 0.54 -1.9
54,321 + EX31_RS09270 0.65 -0.0
54,648 - -0.2
54,648 - -1.6
54,648 - -0.6
54,754 + +0.3
54,755 - +0.1
54,755 - +0.9
54,794 + -0.1
54,799 - +0.5
54,869 + -0.7
54,937 + +0.1
54,938 - -0.2
54,943 - +1.1
54,956 - +0.2
54,956 - -0.8
54,956 - +1.0
54,976 - -1.1
54,976 - -0.3
55,039 + -2.4
55,039 + -0.5
55,039 + +0.4
55,040 - -0.1
55,040 - -0.3
55,040 - -2.4
55,049 - +0.5
55,049 - +0.7
55,049 - +0.9
55,049 - -0.8
55,049 - -0.9
55,049 - -0.1
55,049 - -0.3
55,049 - +0.1
55,049 - -1.2
55,049 - +0.0
55,049 - -0.4
55,049 - -0.2
55,049 - +0.4
55,049 - +0.1
55,054 + +0.7
55,054 + -2.3
55,054 + -0.9
55,054 + -0.0
55,055 - -0.1
55,055 - +0.2
55,055 - +1.1
55,055 - +0.3
55,055 - -0.7
55,055 - +1.2
55,055 - -0.1
55,055 - -0.0
55,055 - +0.9
55,055 - -0.0
55,055 - +0.2
55,055 - +0.6
55,055 - +0.3
55,055 - +0.2
55,055 - -2.6
55,073 - EX31_RS09275 0.11 -0.0
55,076 - EX31_RS09275 0.11 +1.4
55,076 - EX31_RS09275 0.11 +0.9
55,096 + EX31_RS09275 0.13 +0.5
55,097 - EX31_RS09275 0.13 +0.5
55,097 - EX31_RS09275 0.13 -1.4
55,143 - EX31_RS09275 0.17 -0.3
55,201 - EX31_RS09275 0.23 -0.8
55,207 + EX31_RS09275 0.23 +0.6
55,228 + EX31_RS09275 0.25 -0.4
55,280 - EX31_RS09275 0.30 +1.2
55,313 - EX31_RS09275 0.33 +0.4
55,382 + EX31_RS09275 0.40 +0.8
55,383 - EX31_RS09275 0.40 -0.0
55,383 - EX31_RS09275 0.40 +0.5
55,406 + EX31_RS09275 0.42 -0.1
55,479 - EX31_RS09275 0.49 -0.1
55,509 - EX31_RS09275 0.51 +0.6
55,571 - EX31_RS09275 0.57 -1.9
55,616 + EX31_RS09275 0.61 +1.0
55,623 - EX31_RS09275 0.62 -0.2

Or see this region's nucleotide sequence