Strain Fitness in Rahnella sp. WP5 around EX31_RS06980

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06975 and EX31_RS06980 are separated by 162 nucleotidesEX31_RS06980 and EX31_RS06985 overlap by 14 nucleotidesEX31_RS06985 and EX31_RS06990 are separated by 50 nucleotides EX31_RS06975: EX31_RS06975 - YdgA family protein, at 184,037 to 185,578 _RS06975 EX31_RS06980: EX31_RS06980 - iron ABC transporter ATP-binding protein FetA, at 185,741 to 186,412 _RS06980 EX31_RS06985: EX31_RS06985 - iron export ABC transporter permease subunit FetB, at 186,399 to 187,172 _RS06985 EX31_RS06990: EX31_RS06990 - GntR family transcriptional regulator, at 187,223 to 187,918 _RS06990 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 184.810 kb on + strand, within EX31_RS06975at 184.849 kb on + strand, within EX31_RS06975at 184.849 kb on + strand, within EX31_RS06975at 184.871 kb on + strand, within EX31_RS06975at 184.871 kb on + strand, within EX31_RS06975at 184.872 kb on - strand, within EX31_RS06975at 184.872 kb on - strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.980 kb on - strand, within EX31_RS06975at 184.980 kb on - strand, within EX31_RS06975at 185.146 kb on + strand, within EX31_RS06975at 185.226 kb on + strand, within EX31_RS06975at 185.404 kb on + strand, within EX31_RS06975at 185.404 kb on + strand, within EX31_RS06975at 185.408 kb on - strand, within EX31_RS06975at 185.576 kb on + strandat 185.711 kb on - strandat 185.785 kb on + strandat 185.846 kb on - strand, within EX31_RS06980at 185.882 kb on - strand, within EX31_RS06980at 185.882 kb on - strand, within EX31_RS06980at 185.896 kb on + strand, within EX31_RS06980at 185.896 kb on + strand, within EX31_RS06980at 185.934 kb on - strand, within EX31_RS06980at 185.994 kb on - strand, within EX31_RS06980at 186.015 kb on + strand, within EX31_RS06980at 186.015 kb on + strand, within EX31_RS06980at 186.256 kb on + strand, within EX31_RS06980at 186.410 kb on + strandat 186.411 kb on - strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.532 kb on + strand, within EX31_RS06985at 186.657 kb on - strand, within EX31_RS06985at 186.657 kb on - strand, within EX31_RS06985at 186.675 kb on - strand, within EX31_RS06985at 186.822 kb on + strand, within EX31_RS06985at 186.834 kb on - strand, within EX31_RS06985at 186.955 kb on + strand, within EX31_RS06985at 187.047 kb on + strand, within EX31_RS06985at 187.101 kb on - strandat 187.101 kb on - strandat 187.111 kb on - strandat 187.131 kb on + strandat 187.132 kb on - strandat 187.173 kb on + strandat 187.174 kb on - strandat 187.177 kb on + strandat 187.225 kb on - strandat 187.227 kb on - strandat 187.337 kb on - strand, within EX31_RS06990

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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184,810 + EX31_RS06975 0.50 -0.6
184,849 + EX31_RS06975 0.53 -0.2
184,849 + EX31_RS06975 0.53 +0.8
184,871 + EX31_RS06975 0.54 -0.3
184,871 + EX31_RS06975 0.54 +0.9
184,872 - EX31_RS06975 0.54 -0.7
184,872 - EX31_RS06975 0.54 +0.5
184,979 + EX31_RS06975 0.61 +0.9
184,979 + EX31_RS06975 0.61 -0.6
184,979 + EX31_RS06975 0.61 +1.1
184,979 + EX31_RS06975 0.61 +0.1
184,979 + EX31_RS06975 0.61 -0.5
184,979 + EX31_RS06975 0.61 +0.0
184,979 + EX31_RS06975 0.61 -0.0
184,979 + EX31_RS06975 0.61 +0.2
184,980 - EX31_RS06975 0.61 -0.7
184,980 - EX31_RS06975 0.61 +0.3
185,146 + EX31_RS06975 0.72 +0.3
185,226 + EX31_RS06975 0.77 +1.3
185,404 + EX31_RS06975 0.89 +0.0
185,404 + EX31_RS06975 0.89 -0.3
185,408 - EX31_RS06975 0.89 +0.6
185,576 + +0.8
185,711 - +0.3
185,785 + +1.0
185,846 - EX31_RS06980 0.16 -0.6
185,882 - EX31_RS06980 0.21 -0.6
185,882 - EX31_RS06980 0.21 -0.6
185,896 + EX31_RS06980 0.23 +0.9
185,896 + EX31_RS06980 0.23 -1.4
185,934 - EX31_RS06980 0.29 -0.1
185,994 - EX31_RS06980 0.38 -0.4
186,015 + EX31_RS06980 0.41 -1.9
186,015 + EX31_RS06980 0.41 -0.4
186,256 + EX31_RS06980 0.77 -0.6
186,410 + +0.9
186,411 - +1.3
186,413 + -0.8
186,413 + +0.5
186,413 + +0.9
186,413 + -0.7
186,532 + EX31_RS06985 0.17 -1.9
186,657 - EX31_RS06985 0.33 -1.1
186,657 - EX31_RS06985 0.33 +0.6
186,675 - EX31_RS06985 0.36 -0.9
186,822 + EX31_RS06985 0.55 +0.6
186,834 - EX31_RS06985 0.56 -0.7
186,955 + EX31_RS06985 0.72 +0.9
187,047 + EX31_RS06985 0.84 -0.3
187,101 - +1.3
187,101 - -0.1
187,111 - -0.1
187,131 + +1.0
187,132 - +0.6
187,173 + -1.3
187,174 - +0.5
187,177 + +1.2
187,225 - +1.0
187,227 - -0.2
187,337 - EX31_RS06990 0.16 +0.7

Or see this region's nucleotide sequence