Strain Fitness in Rahnella sp. WP5 around EX31_RS06895

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06890 and EX31_RS06895 overlap by 17 nucleotidesEX31_RS06895 and EX31_RS06900 are separated by 48 nucleotides EX31_RS06890: EX31_RS06890 - isopenicillin N synthase family oxygenase, at 167,222 to 168,250 _RS06890 EX31_RS06895: EX31_RS06895 - HlyD family secretion protein, at 168,234 to 169,292 _RS06895 EX31_RS06900: EX31_RS06900 - MFS transporter, at 169,341 to 171,071 _RS06900 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1at 167.373 kb on + strand, within EX31_RS06890at 167.373 kb on + strand, within EX31_RS06890at 167.569 kb on + strand, within EX31_RS06890at 167.761 kb on + strand, within EX31_RS06890at 167.761 kb on + strand, within EX31_RS06890at 167.761 kb on + strand, within EX31_RS06890at 167.762 kb on - strand, within EX31_RS06890at 167.926 kb on + strand, within EX31_RS06890at 167.937 kb on + strand, within EX31_RS06890at 167.941 kb on + strand, within EX31_RS06890at 167.992 kb on - strand, within EX31_RS06890at 167.992 kb on - strand, within EX31_RS06890at 168.238 kb on + strandat 168.238 kb on + strandat 168.270 kb on + strandat 168.270 kb on + strandat 168.374 kb on + strand, within EX31_RS06895at 168.449 kb on + strand, within EX31_RS06895at 168.450 kb on - strand, within EX31_RS06895at 168.592 kb on + strand, within EX31_RS06895at 168.593 kb on - strand, within EX31_RS06895at 168.653 kb on + strand, within EX31_RS06895at 168.654 kb on - strand, within EX31_RS06895at 168.702 kb on + strand, within EX31_RS06895at 169.026 kb on + strand, within EX31_RS06895at 169.026 kb on + strand, within EX31_RS06895at 169.026 kb on + strand, within EX31_RS06895at 169.026 kb on + strand, within EX31_RS06895at 169.040 kb on - strand, within EX31_RS06895at 169.118 kb on - strand, within EX31_RS06895at 169.118 kb on - strand, within EX31_RS06895at 169.118 kb on - strand, within EX31_RS06895at 169.162 kb on + strand, within EX31_RS06895at 169.216 kb on + strandat 169.217 kb on - strandat 169.262 kb on + strandat 169.263 kb on - strandat 169.434 kb on - strandat 169.460 kb on + strandat 169.460 kb on + strandat 169.461 kb on - strandat 169.462 kb on + strandat 169.851 kb on - strand, within EX31_RS06900at 170.054 kb on + strand, within EX31_RS06900at 170.171 kb on + strand, within EX31_RS06900at 170.172 kb on - strand, within EX31_RS06900at 170.273 kb on + strand, within EX31_RS06900

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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167,373 + EX31_RS06890 0.15 -0.6
167,373 + EX31_RS06890 0.15 +0.5
167,569 + EX31_RS06890 0.34 +0.4
167,761 + EX31_RS06890 0.52 -1.1
167,761 + EX31_RS06890 0.52 +1.2
167,761 + EX31_RS06890 0.52 +0.6
167,762 - EX31_RS06890 0.52 +0.4
167,926 + EX31_RS06890 0.68 +0.3
167,937 + EX31_RS06890 0.69 -0.4
167,941 + EX31_RS06890 0.70 -1.6
167,992 - EX31_RS06890 0.75 -0.2
167,992 - EX31_RS06890 0.75 -0.9
168,238 + -0.2
168,238 + -0.1
168,270 + +0.3
168,270 + +0.0
168,374 + EX31_RS06895 0.13 -1.8
168,449 + EX31_RS06895 0.20 +0.7
168,450 - EX31_RS06895 0.20 -2.4
168,592 + EX31_RS06895 0.34 -0.4
168,593 - EX31_RS06895 0.34 +0.4
168,653 + EX31_RS06895 0.40 +1.0
168,654 - EX31_RS06895 0.40 -0.7
168,702 + EX31_RS06895 0.44 -0.8
169,026 + EX31_RS06895 0.75 -1.8
169,026 + EX31_RS06895 0.75 -0.5
169,026 + EX31_RS06895 0.75 +0.2
169,026 + EX31_RS06895 0.75 +0.2
169,040 - EX31_RS06895 0.76 -1.1
169,118 - EX31_RS06895 0.83 -0.3
169,118 - EX31_RS06895 0.83 -0.1
169,118 - EX31_RS06895 0.83 +0.5
169,162 + EX31_RS06895 0.88 -0.5
169,216 + +0.8
169,217 - +0.0
169,262 + +0.0
169,263 - -0.3
169,434 - +0.5
169,460 + +0.4
169,460 + -0.2
169,461 - +0.3
169,462 + -0.7
169,851 - EX31_RS06900 0.29 -0.6
170,054 + EX31_RS06900 0.41 -0.3
170,171 + EX31_RS06900 0.48 -0.2
170,172 - EX31_RS06900 0.48 +0.0
170,273 + EX31_RS06900 0.54 -0.1

Or see this region's nucleotide sequence