Strain Fitness in Rahnella sp. WP5 around EX31_RS06710

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06705 and EX31_RS06710 are separated by 4 nucleotidesEX31_RS06710 and EX31_RS06715 are separated by 418 nucleotides EX31_RS06705: EX31_RS06705 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 121,572 to 123,911 _RS06705 EX31_RS06710: EX31_RS06710 - cellulose biosynthesis protein BcsC, at 123,916 to 127,206 _RS06710 EX31_RS06715: EX31_RS06715 - N-formylglutamate deformylase, at 127,625 to 128,461 _RS06715 Position (kb) 123 124 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 122.963 kb on + strand, within EX31_RS06705at 123.060 kb on + strand, within EX31_RS06705at 123.060 kb on + strand, within EX31_RS06705at 123.060 kb on + strand, within EX31_RS06705at 123.060 kb on + strand, within EX31_RS06705at 123.061 kb on - strand, within EX31_RS06705at 123.063 kb on - strand, within EX31_RS06705at 123.088 kb on + strand, within EX31_RS06705at 123.088 kb on + strand, within EX31_RS06705at 123.088 kb on + strand, within EX31_RS06705at 123.089 kb on - strand, within EX31_RS06705at 123.089 kb on - strand, within EX31_RS06705at 123.089 kb on - strand, within EX31_RS06705at 123.260 kb on + strand, within EX31_RS06705at 123.424 kb on + strand, within EX31_RS06705at 123.425 kb on - strand, within EX31_RS06705at 123.456 kb on - strand, within EX31_RS06705at 123.737 kb on + strandat 123.737 kb on + strandat 123.737 kb on + strandat 123.741 kb on + strandat 123.741 kb on + strandat 123.741 kb on + strandat 123.741 kb on + strandat 123.744 kb on + strandat 123.744 kb on + strandat 123.744 kb on + strandat 123.744 kb on + strandat 124.388 kb on + strand, within EX31_RS06710at 124.388 kb on + strand, within EX31_RS06710at 124.405 kb on - strand, within EX31_RS06710at 124.462 kb on - strand, within EX31_RS06710at 124.488 kb on - strand, within EX31_RS06710at 124.782 kb on + strand, within EX31_RS06710at 124.877 kb on - strand, within EX31_RS06710at 124.948 kb on + strand, within EX31_RS06710at 124.949 kb on - strand, within EX31_RS06710at 125.059 kb on + strand, within EX31_RS06710at 125.060 kb on - strand, within EX31_RS06710at 125.060 kb on - strand, within EX31_RS06710at 125.221 kb on - strand, within EX31_RS06710at 125.224 kb on + strand, within EX31_RS06710at 125.225 kb on - strand, within EX31_RS06710at 125.225 kb on - strand, within EX31_RS06710at 125.257 kb on + strand, within EX31_RS06710at 125.262 kb on + strand, within EX31_RS06710at 125.350 kb on + strand, within EX31_RS06710at 125.350 kb on + strand, within EX31_RS06710at 125.350 kb on + strand, within EX31_RS06710at 125.434 kb on + strand, within EX31_RS06710at 125.435 kb on - strand, within EX31_RS06710at 125.440 kb on + strand, within EX31_RS06710at 125.551 kb on + strand, within EX31_RS06710at 125.552 kb on - strand, within EX31_RS06710at 125.599 kb on - strand, within EX31_RS06710at 125.682 kb on + strand, within EX31_RS06710at 125.704 kb on - strand, within EX31_RS06710at 125.704 kb on - strand, within EX31_RS06710at 126.004 kb on + strand, within EX31_RS06710at 126.004 kb on + strand, within EX31_RS06710at 126.005 kb on - strand, within EX31_RS06710at 126.007 kb on - strand, within EX31_RS06710at 126.007 kb on - strand, within EX31_RS06710at 126.271 kb on + strand, within EX31_RS06710at 126.294 kb on + strand, within EX31_RS06710at 126.416 kb on + strand, within EX31_RS06710at 126.506 kb on + strand, within EX31_RS06710at 126.592 kb on + strand, within EX31_RS06710at 126.697 kb on + strand, within EX31_RS06710at 126.698 kb on - strand, within EX31_RS06710at 126.700 kb on + strand, within EX31_RS06710at 126.701 kb on - strand, within EX31_RS06710at 126.701 kb on - strand, within EX31_RS06710at 126.763 kb on + strand, within EX31_RS06710at 126.785 kb on - strand, within EX31_RS06710at 126.785 kb on - strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.809 kb on - strand, within EX31_RS06710at 126.851 kb on - strand, within EX31_RS06710at 127.017 kb on + strandat 127.017 kb on + strandat 127.017 kb on + strandat 127.018 kb on - strandat 127.123 kb on + strandat 127.181 kb on + strandat 127.201 kb on - strandat 127.223 kb on - strandat 127.223 kb on - strandat 127.223 kb on - strandat 127.564 kb on - strandat 127.642 kb on + strandat 127.645 kb on - strandat 127.726 kb on - strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.822 kb on + strand, within EX31_RS06715at 127.823 kb on - strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.835 kb on - strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.167 kb on - strand, within EX31_RS06715at 128.188 kb on + strand, within EX31_RS06715at 128.190 kb on + strand, within EX31_RS06715at 128.191 kb on - strand, within EX31_RS06715

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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122,963 + EX31_RS06705 0.59 -1.8
123,060 + EX31_RS06705 0.64 -0.3
123,060 + EX31_RS06705 0.64 -0.3
123,060 + EX31_RS06705 0.64 +0.1
123,060 + EX31_RS06705 0.64 -0.1
123,061 - EX31_RS06705 0.64 -1.4
123,063 - EX31_RS06705 0.64 +1.6
123,088 + EX31_RS06705 0.65 -0.2
123,088 + EX31_RS06705 0.65 -0.9
123,088 + EX31_RS06705 0.65 +1.7
123,089 - EX31_RS06705 0.65 +0.8
123,089 - EX31_RS06705 0.65 -0.9
123,089 - EX31_RS06705 0.65 -2.4
123,260 + EX31_RS06705 0.72 -0.4
123,424 + EX31_RS06705 0.79 +1.2
123,425 - EX31_RS06705 0.79 -0.2
123,456 - EX31_RS06705 0.81 -0.9
123,737 + -1.0
123,737 + -0.9
123,737 + -0.0
123,741 + +0.2
123,741 + -0.7
123,741 + +0.3
123,741 + +0.0
123,744 + -0.5
123,744 + -0.1
123,744 + +0.3
123,744 + -1.6
124,388 + EX31_RS06710 0.14 -0.2
124,388 + EX31_RS06710 0.14 -0.5
124,405 - EX31_RS06710 0.15 -2.1
124,462 - EX31_RS06710 0.17 -0.4
124,488 - EX31_RS06710 0.17 -2.7
124,782 + EX31_RS06710 0.26 -1.0
124,877 - EX31_RS06710 0.29 -0.3
124,948 + EX31_RS06710 0.31 +0.3
124,949 - EX31_RS06710 0.31 -1.2
125,059 + EX31_RS06710 0.35 -0.2
125,060 - EX31_RS06710 0.35 -0.2
125,060 - EX31_RS06710 0.35 -0.5
125,221 - EX31_RS06710 0.40 -0.4
125,224 + EX31_RS06710 0.40 -0.6
125,225 - EX31_RS06710 0.40 -0.3
125,225 - EX31_RS06710 0.40 +0.5
125,257 + EX31_RS06710 0.41 +1.0
125,262 + EX31_RS06710 0.41 +0.7
125,350 + EX31_RS06710 0.44 +0.2
125,350 + EX31_RS06710 0.44 -0.3
125,350 + EX31_RS06710 0.44 +0.5
125,434 + EX31_RS06710 0.46 -1.5
125,435 - EX31_RS06710 0.46 -0.9
125,440 + EX31_RS06710 0.46 +0.7
125,551 + EX31_RS06710 0.50 -1.0
125,552 - EX31_RS06710 0.50 +0.3
125,599 - EX31_RS06710 0.51 +0.1
125,682 + EX31_RS06710 0.54 +0.4
125,704 - EX31_RS06710 0.54 -1.9
125,704 - EX31_RS06710 0.54 +0.2
126,004 + EX31_RS06710 0.63 -1.4
126,004 + EX31_RS06710 0.63 -0.9
126,005 - EX31_RS06710 0.63 -0.4
126,007 - EX31_RS06710 0.64 -0.6
126,007 - EX31_RS06710 0.64 -0.9
126,271 + EX31_RS06710 0.72 +0.3
126,294 + EX31_RS06710 0.72 -0.3
126,416 + EX31_RS06710 0.76 -0.6
126,506 + EX31_RS06710 0.79 +0.3
126,592 + EX31_RS06710 0.81 -0.2
126,697 + EX31_RS06710 0.85 -0.1
126,698 - EX31_RS06710 0.85 -0.9
126,700 + EX31_RS06710 0.85 -0.4
126,701 - EX31_RS06710 0.85 -0.7
126,701 - EX31_RS06710 0.85 +0.3
126,763 + EX31_RS06710 0.87 -0.4
126,785 - EX31_RS06710 0.87 -0.2
126,785 - EX31_RS06710 0.87 +0.4
126,808 + EX31_RS06710 0.88 -0.2
126,808 + EX31_RS06710 0.88 -0.3
126,808 + EX31_RS06710 0.88 +0.5
126,809 - EX31_RS06710 0.88 -0.3
126,851 - EX31_RS06710 0.89 -0.3
127,017 + -0.6
127,017 + -0.6
127,017 + -1.2
127,018 - +0.7
127,123 + -0.7
127,181 + +0.7
127,201 - +0.1
127,223 - -0.1
127,223 - +1.0
127,223 - +0.7
127,564 - -0.1
127,642 + +0.7
127,645 - -0.1
127,726 - EX31_RS06715 0.12 +0.6
127,752 + EX31_RS06715 0.15 -0.3
127,752 + EX31_RS06715 0.15 +0.5
127,752 + EX31_RS06715 0.15 -1.2
127,753 - EX31_RS06715 0.15 +0.4
127,753 - EX31_RS06715 0.15 -1.3
127,753 - EX31_RS06715 0.15 -0.5
127,753 - EX31_RS06715 0.15 -0.3
127,822 + EX31_RS06715 0.24 +1.3
127,823 - EX31_RS06715 0.24 +0.4
127,824 + EX31_RS06715 0.24 +2.1
127,824 + EX31_RS06715 0.24 +0.0
127,835 - EX31_RS06715 0.25 -0.3
127,846 + EX31_RS06715 0.26 +0.2
127,846 + EX31_RS06715 0.26 -0.1
128,154 - EX31_RS06715 0.63 -0.7
128,154 - EX31_RS06715 0.63 -1.1
128,167 - EX31_RS06715 0.65 -1.2
128,188 + EX31_RS06715 0.67 +0.1
128,190 + EX31_RS06715 0.68 +0.4
128,191 - EX31_RS06715 0.68 +0.2

Or see this region's nucleotide sequence