Strain Fitness in Rahnella sp. WP5 around EX31_RS06420

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06415 and EX31_RS06420 are separated by 108 nucleotidesEX31_RS06420 and EX31_RS06425 are separated by 47 nucleotides EX31_RS06415: EX31_RS06415 - helix-turn-helix domain-containing protein, at 48,309 to 49,175 _RS06415 EX31_RS06420: EX31_RS06420 - MFS transporter, at 49,284 to 50,582 _RS06420 EX31_RS06425: EX31_RS06425 - family 78 glycoside hydrolase catalytic domain, at 50,630 to 53,287 _RS06425 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.452 kb on + strand, within EX31_RS06415at 48.732 kb on + strand, within EX31_RS06415at 49.304 kb on + strandat 49.346 kb on + strandat 49.389 kb on - strandat 49.392 kb on + strandat 49.392 kb on + strandat 49.433 kb on - strand, within EX31_RS06420at 49.444 kb on + strand, within EX31_RS06420at 49.619 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.788 kb on - strand, within EX31_RS06420at 49.791 kb on + strand, within EX31_RS06420at 49.839 kb on - strand, within EX31_RS06420at 49.935 kb on - strand, within EX31_RS06420at 49.961 kb on + strand, within EX31_RS06420at 49.980 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.040 kb on - strand, within EX31_RS06420at 50.124 kb on - strand, within EX31_RS06420at 50.163 kb on - strand, within EX31_RS06420at 50.166 kb on - strand, within EX31_RS06420at 50.210 kb on - strand, within EX31_RS06420at 50.210 kb on - strand, within EX31_RS06420at 50.345 kb on + strand, within EX31_RS06420at 50.346 kb on - strand, within EX31_RS06420at 50.348 kb on + strand, within EX31_RS06420at 50.348 kb on + strand, within EX31_RS06420at 50.510 kb on + strandat 50.510 kb on + strandat 50.531 kb on + strandat 50.534 kb on + strandat 50.567 kb on + strandat 50.580 kb on + strandat 50.580 kb on + strandat 50.588 kb on + strandat 50.610 kb on + strandat 50.610 kb on + strandat 50.621 kb on + strandat 50.621 kb on + strandat 50.629 kb on + strandat 50.651 kb on - strandat 50.701 kb on - strandat 50.847 kb on + strandat 50.871 kb on - strandat 50.890 kb on - strandat 50.896 kb on + strand, within EX31_RS06425at 50.901 kb on - strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 51.004 kb on + strand, within EX31_RS06425at 51.079 kb on + strand, within EX31_RS06425at 51.080 kb on - strand, within EX31_RS06425at 51.080 kb on - strand, within EX31_RS06425at 51.105 kb on - strand, within EX31_RS06425at 51.112 kb on - strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.181 kb on - strand, within EX31_RS06425at 51.181 kb on - strand, within EX31_RS06425at 51.194 kb on + strand, within EX31_RS06425at 51.195 kb on - strand, within EX31_RS06425at 51.195 kb on - strand, within EX31_RS06425at 51.271 kb on + strand, within EX31_RS06425at 51.296 kb on + strand, within EX31_RS06425at 51.299 kb on + strand, within EX31_RS06425at 51.319 kb on + strand, within EX31_RS06425at 51.342 kb on - strand, within EX31_RS06425

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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48,452 + EX31_RS06415 0.16 -0.2
48,732 + EX31_RS06415 0.49 +0.2
49,304 + -0.2
49,346 + +0.3
49,389 - +1.4
49,392 + +0.6
49,392 + -1.4
49,433 - EX31_RS06420 0.11 -0.1
49,444 + EX31_RS06420 0.12 +0.7
49,619 + EX31_RS06420 0.26 -1.7
49,787 + EX31_RS06420 0.39 -0.3
49,787 + EX31_RS06420 0.39 +0.5
49,787 + EX31_RS06420 0.39 +0.4
49,787 + EX31_RS06420 0.39 +0.2
49,787 + EX31_RS06420 0.39 -1.0
49,788 - EX31_RS06420 0.39 -0.7
49,791 + EX31_RS06420 0.39 -1.9
49,839 - EX31_RS06420 0.43 +0.2
49,935 - EX31_RS06420 0.50 +1.8
49,961 + EX31_RS06420 0.52 +0.9
49,980 + EX31_RS06420 0.54 -0.3
50,028 + EX31_RS06420 0.57 +0.8
50,028 + EX31_RS06420 0.57 +0.1
50,028 + EX31_RS06420 0.57 -0.6
50,028 + EX31_RS06420 0.57 +0.1
50,028 + EX31_RS06420 0.57 -0.4
50,029 - EX31_RS06420 0.57 +0.9
50,029 - EX31_RS06420 0.57 +0.7
50,029 - EX31_RS06420 0.57 -0.5
50,029 - EX31_RS06420 0.57 -0.6
50,029 - EX31_RS06420 0.57 -0.5
50,030 + EX31_RS06420 0.57 -1.0
50,030 + EX31_RS06420 0.57 +0.0
50,030 + EX31_RS06420 0.57 +0.2
50,030 + EX31_RS06420 0.57 +1.2
50,040 - EX31_RS06420 0.58 -0.8
50,124 - EX31_RS06420 0.65 -1.4
50,163 - EX31_RS06420 0.68 +1.6
50,166 - EX31_RS06420 0.68 +0.3
50,210 - EX31_RS06420 0.71 +0.8
50,210 - EX31_RS06420 0.71 +0.5
50,345 + EX31_RS06420 0.82 -1.5
50,346 - EX31_RS06420 0.82 +0.7
50,348 + EX31_RS06420 0.82 +1.2
50,348 + EX31_RS06420 0.82 -0.7
50,510 + -0.1
50,510 + -2.0
50,531 + -0.3
50,534 + +0.3
50,567 + +0.8
50,580 + +0.6
50,580 + +1.5
50,588 + -0.4
50,610 + +0.6
50,610 + -0.5
50,621 + -0.4
50,621 + -1.4
50,629 + +0.3
50,651 - -0.3
50,701 - -0.5
50,847 + -2.5
50,871 - +0.8
50,890 - +1.1
50,896 + EX31_RS06425 0.10 +0.2
50,901 - EX31_RS06425 0.10 -1.8
50,954 + EX31_RS06425 0.12 +0.4
50,954 + EX31_RS06425 0.12 +0.0
50,954 + EX31_RS06425 0.12 -0.2
51,004 + EX31_RS06425 0.14 +1.2
51,079 + EX31_RS06425 0.17 +1.6
51,080 - EX31_RS06425 0.17 +0.6
51,080 - EX31_RS06425 0.17 -0.4
51,105 - EX31_RS06425 0.18 -0.2
51,112 - EX31_RS06425 0.18 +0.9
51,180 + EX31_RS06425 0.21 +1.0
51,180 + EX31_RS06425 0.21 +0.8
51,180 + EX31_RS06425 0.21 +0.7
51,180 + EX31_RS06425 0.21 +0.1
51,181 - EX31_RS06425 0.21 -1.1
51,181 - EX31_RS06425 0.21 +0.3
51,194 + EX31_RS06425 0.21 -2.3
51,195 - EX31_RS06425 0.21 -0.1
51,195 - EX31_RS06425 0.21 -0.2
51,271 + EX31_RS06425 0.24 +0.2
51,296 + EX31_RS06425 0.25 -0.7
51,299 + EX31_RS06425 0.25 -0.1
51,319 + EX31_RS06425 0.26 +0.5
51,342 - EX31_RS06425 0.27 -0.4

Or see this region's nucleotide sequence