Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24635 and EX31_RS25680 are separated by 672 nucleotides EX31_RS25680 and EX31_RS24640 are separated by 144 nucleotides EX31_RS24640 and EX31_RS24645 are separated by 149 nucleotides
EX31_RS24635: EX31_RS24635 - autotransporter outer membrane beta-barrel domain-containing protein, at 694,803 to 697,496
_RS24635
EX31_RS25680: EX31_RS25680 - PhoP/PhoQ regulator MgrB, at 698,169 to 698,411
_RS25680
EX31_RS24640: EX31_RS24640 - hypothetical protein, at 698,556 to 698,828
_RS24640
EX31_RS24645: EX31_RS24645 - DUF2591 domain-containing protein, at 698,978 to 699,280
_RS24645
Position (kb)
698
699 Strain fitness (log2 ratio)
-2
-1
0
1 at 697.193 kb on + strand, within EX31_RS24635 at 697.194 kb on - strand, within EX31_RS24635 at 697.226 kb on + strand, within EX31_RS24635 at 697.289 kb on - strand at 697.289 kb on - strand at 697.306 kb on + strand at 697.306 kb on + strand at 697.306 kb on + strand at 697.307 kb on - strand at 697.307 kb on - strand at 697.378 kb on + strand at 697.378 kb on + strand at 697.379 kb on - strand at 697.385 kb on + strand at 697.386 kb on - strand at 697.407 kb on - strand at 697.786 kb on + strand at 697.787 kb on - strand at 697.838 kb on + strand at 697.839 kb on - strand at 697.895 kb on - strand at 697.978 kb on + strand at 698.043 kb on + strand at 698.044 kb on - strand at 698.100 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.169 kb on - strand at 698.169 kb on - strand at 698.217 kb on - strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.289 kb on - strand, within EX31_RS25680 at 698.325 kb on + strand, within EX31_RS25680 at 698.325 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.347 kb on - strand, within EX31_RS25680 at 698.347 kb on - strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.492 kb on - strand at 698.517 kb on + strand at 698.550 kb on + strand at 698.623 kb on + strand, within EX31_RS24640 at 698.689 kb on + strand, within EX31_RS24640 at 698.728 kb on + strand, within EX31_RS24640 at 698.729 kb on - strand, within EX31_RS24640 at 698.732 kb on + strand, within EX31_RS24640 at 698.813 kb on + strand at 698.814 kb on - strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.827 kb on - strand at 698.884 kb on - strand at 698.972 kb on + strand at 699.024 kb on + strand, within EX31_RS24645 at 699.025 kb on - strand, within EX31_RS24645 at 699.025 kb on - strand, within EX31_RS24645 at 699.060 kb on - strand, within EX31_RS24645 at 699.249 kb on + strand, within EX31_RS24645 at 699.250 kb on - strand at 699.262 kb on + strand at 699.276 kb on + strand at 699.297 kb on - strand at 699.297 kb on - strand at 699.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 697,193 + EX31_RS24635 0.89 -0.2 697,194 - EX31_RS24635 0.89 +0.2 697,226 + EX31_RS24635 0.90 +0.1 697,289 - +0.4 697,289 - -1.4 697,306 + -0.0 697,306 + -0.4 697,306 + -0.1 697,307 - +1.6 697,307 - +0.3 697,378 + -1.4 697,378 + +0.7 697,379 - +0.1 697,385 + -0.3 697,386 - -0.6 697,407 - -0.5 697,786 + +0.3 697,787 - +0.3 697,838 + +0.1 697,839 - +0.1 697,895 - +0.2 697,978 + -0.7 698,043 + -0.2 698,044 - +1.3 698,100 + +1.1 698,168 + +1.7 698,168 + -2.5 698,168 + -1.6 698,168 + +0.2 698,168 + +0.1 698,168 + +0.2 698,169 - -0.5 698,169 - -1.3 698,217 - EX31_RS25680 0.20 -0.9 698,288 + EX31_RS25680 0.49 -0.9 698,288 + EX31_RS25680 0.49 +0.8 698,288 + EX31_RS25680 0.49 -1.5 698,289 - EX31_RS25680 0.49 -1.0 698,325 + EX31_RS25680 0.64 -0.6 698,325 + EX31_RS25680 0.64 -1.2 698,346 + EX31_RS25680 0.73 -0.7 698,346 + EX31_RS25680 0.73 -1.9 698,346 + EX31_RS25680 0.73 -0.7 698,346 + EX31_RS25680 0.73 -0.3 698,346 + EX31_RS25680 0.73 -1.0 698,346 + EX31_RS25680 0.73 +0.2 698,347 - EX31_RS25680 0.73 -1.8 698,347 - EX31_RS25680 0.73 -0.1 698,380 + EX31_RS25680 0.87 -1.3 698,380 + EX31_RS25680 0.87 -0.2 698,380 + EX31_RS25680 0.87 -0.4 698,380 + EX31_RS25680 0.87 -0.1 698,380 + EX31_RS25680 0.87 +1.0 698,380 + EX31_RS25680 0.87 -0.1 698,380 + EX31_RS25680 0.87 -0.7 698,380 + EX31_RS25680 0.87 -1.4 698,380 + EX31_RS25680 0.87 -0.8 698,492 - +0.1 698,517 + -0.5 698,550 + -0.8 698,623 + EX31_RS24640 0.25 -0.4 698,689 + EX31_RS24640 0.49 -0.4 698,728 + EX31_RS24640 0.63 -0.2 698,729 - EX31_RS24640 0.63 +0.8 698,732 + EX31_RS24640 0.64 +0.2 698,813 + -0.2 698,814 - -0.1 698,826 + -1.1 698,826 + -0.2 698,826 + -0.1 698,826 + -0.6 698,826 + -0.2 698,827 - +0.1 698,884 - -1.1 698,972 + -0.2 699,024 + EX31_RS24645 0.15 +0.2 699,025 - EX31_RS24645 0.16 -0.4 699,025 - EX31_RS24645 0.16 -0.3 699,060 - EX31_RS24645 0.27 -0.1 699,249 + EX31_RS24645 0.89 +0.3 699,250 - +0.4 699,262 + -1.0 699,276 + +0.2 699,297 - -0.5 699,297 - +0.8 699,371 + +0.4
Or see this region's nucleotide sequence