Strain Fitness in Rahnella sp. WP5 around EX31_RS25470

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16575 and EX31_RS25470 are separated by 39 nucleotidesEX31_RS25470 and EX31_RS16580 are separated by 78 nucleotidesEX31_RS16580 and EX31_RS16585 are separated by 64 nucleotides EX31_RS16575: EX31_RS16575 - LysR family transcriptional regulator, at 29,864 to 30,760 _RS16575 EX31_RS25470: EX31_RS25470 - LysR family transcriptional regulator, at 30,800 to 30,970 _RS25470 EX31_RS16580: EX31_RS16580 - transposase, at 31,049 to 31,246 _RS16580 EX31_RS16585: EX31_RS16585 - IS3 family transposase, at 31,311 to 31,709 _RS16585 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1at 29.800 kb on + strandat 29.800 kb on + strandat 29.800 kb on + strandat 29.800 kb on + strandat 29.800 kb on + strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.803 kb on + strandat 29.803 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.813 kb on + strandat 29.814 kb on - strandat 29.814 kb on - strandat 29.814 kb on - strandat 29.814 kb on - strandat 29.814 kb on - strandat 29.814 kb on - strandat 29.821 kb on + strandat 29.821 kb on + strandat 29.845 kb on + strandat 29.845 kb on + strandat 29.845 kb on + strandat 29.846 kb on - strandat 29.846 kb on - strandat 29.869 kb on + strandat 29.869 kb on + strandat 29.870 kb on - strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.891 kb on + strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.892 kb on - strandat 29.966 kb on - strand, within EX31_RS16575at 30.000 kb on + strand, within EX31_RS16575at 30.000 kb on + strand, within EX31_RS16575at 30.001 kb on - strand, within EX31_RS16575at 30.001 kb on - strand, within EX31_RS16575at 30.001 kb on - strand, within EX31_RS16575at 30.006 kb on + strand, within EX31_RS16575at 30.007 kb on - strand, within EX31_RS16575at 30.007 kb on - strand, within EX31_RS16575at 30.009 kb on + strand, within EX31_RS16575at 30.009 kb on + strand, within EX31_RS16575at 30.009 kb on + strand, within EX31_RS16575at 30.009 kb on + strand, within EX31_RS16575at 30.010 kb on - strand, within EX31_RS16575at 30.010 kb on - strand, within EX31_RS16575at 30.010 kb on - strand, within EX31_RS16575at 30.010 kb on - strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.013 kb on + strand, within EX31_RS16575at 30.031 kb on + strand, within EX31_RS16575at 30.031 kb on + strand, within EX31_RS16575at 30.032 kb on - strand, within EX31_RS16575at 30.032 kb on - strand, within EX31_RS16575at 30.032 kb on - strand, within EX31_RS16575at 30.032 kb on - strand, within EX31_RS16575at 30.059 kb on + strand, within EX31_RS16575at 30.059 kb on + strand, within EX31_RS16575at 30.077 kb on - strand, within EX31_RS16575at 30.091 kb on - strand, within EX31_RS16575at 30.145 kb on + strand, within EX31_RS16575at 30.209 kb on - strand, within EX31_RS16575at 30.243 kb on + strand, within EX31_RS16575at 30.243 kb on + strand, within EX31_RS16575at 30.243 kb on + strand, within EX31_RS16575at 30.244 kb on - strand, within EX31_RS16575at 30.244 kb on - strand, within EX31_RS16575at 30.247 kb on + strand, within EX31_RS16575at 30.247 kb on + strand, within EX31_RS16575at 30.247 kb on + strand, within EX31_RS16575at 30.253 kb on + strand, within EX31_RS16575at 30.344 kb on + strand, within EX31_RS16575at 30.374 kb on + strand, within EX31_RS16575at 30.374 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.414 kb on + strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.415 kb on - strand, within EX31_RS16575at 30.445 kb on + strand, within EX31_RS16575at 30.445 kb on + strand, within EX31_RS16575at 30.445 kb on + strand, within EX31_RS16575at 30.445 kb on + strand, within EX31_RS16575at 30.446 kb on - strand, within EX31_RS16575at 30.446 kb on - strand, within EX31_RS16575at 30.446 kb on - strand, within EX31_RS16575at 30.489 kb on - strand, within EX31_RS16575at 30.569 kb on - strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.624 kb on + strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.625 kb on - strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.630 kb on + strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.631 kb on - strand, within EX31_RS16575at 30.649 kb on - strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.669 kb on + strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.670 kb on - strand, within EX31_RS16575at 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.674 kb on + strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.675 kb on - strandat 30.758 kb on + strandat 30.759 kb on - strandat 30.759 kb on - strandat 30.759 kb on - strandat 30.759 kb on - strandat 30.785 kb on + strandat 30.786 kb on - strandat 30.799 kb on + strandat 30.799 kb on + strandat 30.875 kb on - strand, within EX31_RS25470at 30.919 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.925 kb on + strand, within EX31_RS25470at 30.926 kb on - strand, within EX31_RS25470at 30.926 kb on - strand, within EX31_RS25470

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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29,800 + -0.3
29,800 + +1.3
29,800 + +1.5
29,800 + -0.1
29,800 + -0.3
29,801 - +0.2
29,801 - -1.1
29,801 - -0.0
29,801 - -0.4
29,801 - -1.3
29,801 - -0.2
29,803 + -0.2
29,803 + -0.3
29,813 + -0.0
29,813 + -1.8
29,813 + -0.1
29,813 + +0.6
29,813 + +0.8
29,813 + +1.5
29,813 + +0.6
29,814 - -0.2
29,814 - -0.3
29,814 - +1.0
29,814 - -0.4
29,814 - +1.4
29,814 - +0.2
29,821 + +0.4
29,821 + +0.5
29,845 + -1.4
29,845 + -0.1
29,845 + -0.3
29,846 - +0.1
29,846 - +0.1
29,869 + -0.3
29,869 + -0.0
29,870 - +0.5
29,891 + +0.0
29,891 + +0.3
29,891 + +0.0
29,891 + -0.1
29,891 + +0.2
29,891 + -0.4
29,891 + +0.4
29,891 + -0.1
29,891 + -0.2
29,892 - -0.6
29,892 - -0.2
29,892 - +0.0
29,892 - -0.4
29,892 - -1.5
29,892 - +0.3
29,892 - -0.8
29,892 - -0.7
29,892 - +0.2
29,892 - -0.5
29,892 - -1.0
29,892 - -0.1
29,892 - +0.3
29,892 - +0.3
29,892 - +0.2
29,966 - EX31_RS16575 0.11 -1.5
30,000 + EX31_RS16575 0.15 -0.9
30,000 + EX31_RS16575 0.15 -1.1
30,001 - EX31_RS16575 0.15 -0.5
30,001 - EX31_RS16575 0.15 -0.4
30,001 - EX31_RS16575 0.15 +0.3
30,006 + EX31_RS16575 0.16 -0.1
30,007 - EX31_RS16575 0.16 +0.9
30,007 - EX31_RS16575 0.16 +0.4
30,009 + EX31_RS16575 0.16 -0.7
30,009 + EX31_RS16575 0.16 +0.4
30,009 + EX31_RS16575 0.16 -0.4
30,009 + EX31_RS16575 0.16 +0.3
30,010 - EX31_RS16575 0.16 -0.6
30,010 - EX31_RS16575 0.16 -0.1
30,010 - EX31_RS16575 0.16 -0.2
30,010 - EX31_RS16575 0.16 -0.2
30,013 + EX31_RS16575 0.17 -0.3
30,013 + EX31_RS16575 0.17 +0.7
30,013 + EX31_RS16575 0.17 -0.0
30,013 + EX31_RS16575 0.17 +0.1
30,013 + EX31_RS16575 0.17 +0.2
30,013 + EX31_RS16575 0.17 -0.3
30,031 + EX31_RS16575 0.19 -0.1
30,031 + EX31_RS16575 0.19 +0.5
30,032 - EX31_RS16575 0.19 +0.0
30,032 - EX31_RS16575 0.19 -0.6
30,032 - EX31_RS16575 0.19 -0.6
30,032 - EX31_RS16575 0.19 -0.2
30,059 + EX31_RS16575 0.22 -0.3
30,059 + EX31_RS16575 0.22 +0.9
30,077 - EX31_RS16575 0.24 +0.4
30,091 - EX31_RS16575 0.25 -1.0
30,145 + EX31_RS16575 0.31 +1.3
30,209 - EX31_RS16575 0.38 -0.3
30,243 + EX31_RS16575 0.42 +0.1
30,243 + EX31_RS16575 0.42 -0.7
30,243 + EX31_RS16575 0.42 +0.7
30,244 - EX31_RS16575 0.42 +0.3
30,244 - EX31_RS16575 0.42 +0.5
30,247 + EX31_RS16575 0.43 +0.1
30,247 + EX31_RS16575 0.43 +0.3
30,247 + EX31_RS16575 0.43 +0.1
30,253 + EX31_RS16575 0.43 +0.4
30,344 + EX31_RS16575 0.54 +0.3
30,374 + EX31_RS16575 0.57 -0.2
30,374 + EX31_RS16575 0.57 -0.8
30,414 + EX31_RS16575 0.61 +0.4
30,414 + EX31_RS16575 0.61 +0.0
30,414 + EX31_RS16575 0.61 +0.4
30,414 + EX31_RS16575 0.61 +0.8
30,414 + EX31_RS16575 0.61 +0.9
30,414 + EX31_RS16575 0.61 -0.1
30,414 + EX31_RS16575 0.61 +1.1
30,414 + EX31_RS16575 0.61 -1.4
30,414 + EX31_RS16575 0.61 +1.2
30,414 + EX31_RS16575 0.61 -0.7
30,414 + EX31_RS16575 0.61 -1.9
30,414 + EX31_RS16575 0.61 +1.2
30,414 + EX31_RS16575 0.61 -0.5
30,414 + EX31_RS16575 0.61 -0.0
30,414 + EX31_RS16575 0.61 +0.9
30,415 - EX31_RS16575 0.61 +0.2
30,415 - EX31_RS16575 0.61 -0.7
30,415 - EX31_RS16575 0.61 +0.2
30,415 - EX31_RS16575 0.61 -1.6
30,415 - EX31_RS16575 0.61 +0.2
30,415 - EX31_RS16575 0.61 +0.3
30,445 + EX31_RS16575 0.65 -1.0
30,445 + EX31_RS16575 0.65 +1.3
30,445 + EX31_RS16575 0.65 +1.2
30,445 + EX31_RS16575 0.65 +0.5
30,446 - EX31_RS16575 0.65 +0.1
30,446 - EX31_RS16575 0.65 -1.5
30,446 - EX31_RS16575 0.65 +0.0
30,489 - EX31_RS16575 0.70 -0.0
30,569 - EX31_RS16575 0.79 +0.7
30,624 + EX31_RS16575 0.85 -0.5
30,624 + EX31_RS16575 0.85 -0.9
30,624 + EX31_RS16575 0.85 -0.7
30,624 + EX31_RS16575 0.85 +0.4
30,624 + EX31_RS16575 0.85 +0.5
30,624 + EX31_RS16575 0.85 +0.3
30,624 + EX31_RS16575 0.85 +0.9
30,624 + EX31_RS16575 0.85 +0.2
30,624 + EX31_RS16575 0.85 -0.6
30,624 + EX31_RS16575 0.85 +0.3
30,624 + EX31_RS16575 0.85 -0.3
30,624 + EX31_RS16575 0.85 +0.2
30,624 + EX31_RS16575 0.85 +0.8
30,625 - EX31_RS16575 0.85 +0.8
30,625 - EX31_RS16575 0.85 +0.1
30,625 - EX31_RS16575 0.85 +0.1
30,625 - EX31_RS16575 0.85 -0.5
30,625 - EX31_RS16575 0.85 -0.4
30,625 - EX31_RS16575 0.85 -0.6
30,625 - EX31_RS16575 0.85 +0.7
30,630 + EX31_RS16575 0.85 -0.3
30,630 + EX31_RS16575 0.85 -1.1
30,630 + EX31_RS16575 0.85 +0.7
30,630 + EX31_RS16575 0.85 -0.1
30,630 + EX31_RS16575 0.85 +0.5
30,630 + EX31_RS16575 0.85 +0.7
30,630 + EX31_RS16575 0.85 -0.3
30,630 + EX31_RS16575 0.85 +0.2
30,630 + EX31_RS16575 0.85 -0.2
30,630 + EX31_RS16575 0.85 +0.1
30,630 + EX31_RS16575 0.85 +0.5
30,630 + EX31_RS16575 0.85 +0.1
30,630 + EX31_RS16575 0.85 -0.6
30,630 + EX31_RS16575 0.85 -0.3
30,630 + EX31_RS16575 0.85 -0.4
30,631 - EX31_RS16575 0.86 -1.5
30,631 - EX31_RS16575 0.86 +0.2
30,631 - EX31_RS16575 0.86 -0.3
30,631 - EX31_RS16575 0.86 -0.2
30,631 - EX31_RS16575 0.86 -0.5
30,631 - EX31_RS16575 0.86 +0.4
30,631 - EX31_RS16575 0.86 +0.6
30,631 - EX31_RS16575 0.86 +0.2
30,631 - EX31_RS16575 0.86 +0.5
30,631 - EX31_RS16575 0.86 +0.6
30,631 - EX31_RS16575 0.86 -0.8
30,631 - EX31_RS16575 0.86 +1.1
30,631 - EX31_RS16575 0.86 +0.0
30,649 - EX31_RS16575 0.88 +0.9
30,669 + EX31_RS16575 0.90 +0.0
30,669 + EX31_RS16575 0.90 -1.5
30,669 + EX31_RS16575 0.90 +0.1
30,669 + EX31_RS16575 0.90 +0.7
30,669 + EX31_RS16575 0.90 -0.1
30,669 + EX31_RS16575 0.90 +0.0
30,669 + EX31_RS16575 0.90 +0.5
30,669 + EX31_RS16575 0.90 +1.3
30,669 + EX31_RS16575 0.90 -0.6
30,669 + EX31_RS16575 0.90 -0.1
30,669 + EX31_RS16575 0.90 +0.6
30,669 + EX31_RS16575 0.90 +0.2
30,670 - EX31_RS16575 0.90 -1.2
30,670 - EX31_RS16575 0.90 -0.2
30,670 - EX31_RS16575 0.90 +0.1
30,670 - EX31_RS16575 0.90 -1.5
30,670 - EX31_RS16575 0.90 -0.7
30,670 - EX31_RS16575 0.90 +0.3
30,670 - EX31_RS16575 0.90 -0.6
30,670 - EX31_RS16575 0.90 +0.4
30,670 - EX31_RS16575 0.90 +0.8
30,670 - EX31_RS16575 0.90 +0.0
30,670 - EX31_RS16575 0.90 +1.0
30,670 - EX31_RS16575 0.90 +1.7
30,670 - EX31_RS16575 0.90 -0.8
30,670 - EX31_RS16575 0.90 +0.1
30,670 - EX31_RS16575 0.90 -0.5
30,670 - EX31_RS16575 0.90 -0.4
30,670 - EX31_RS16575 0.90 -1.1
30,670 - EX31_RS16575 0.90 +0.0
30,674 + -0.3
30,674 + +0.8
30,674 + +0.7
30,674 + -0.2
30,674 + +0.5
30,674 + +0.0
30,674 + -1.8
30,674 + +1.0
30,674 + -0.1
30,674 + +0.2
30,674 + -0.1
30,674 + +0.5
30,675 - -0.6
30,675 - +0.4
30,675 - -0.1
30,675 - +0.3
30,675 - -0.9
30,675 - +0.1
30,675 - +0.5
30,675 - +0.1
30,675 - +0.1
30,675 - -0.8
30,758 + +0.1
30,759 - +0.4
30,759 - +0.6
30,759 - +0.2
30,759 - +0.0
30,785 + +0.8
30,786 - +0.4
30,799 + +1.2
30,799 + -1.0
30,875 - EX31_RS25470 0.44 -0.2
30,919 + EX31_RS25470 0.70 -2.0
30,925 + EX31_RS25470 0.73 -0.6
30,925 + EX31_RS25470 0.73 +0.4
30,925 + EX31_RS25470 0.73 +0.5
30,925 + EX31_RS25470 0.73 -1.6
30,925 + EX31_RS25470 0.73 +0.3
30,925 + EX31_RS25470 0.73 -1.1
30,926 - EX31_RS25470 0.74 -0.2
30,926 - EX31_RS25470 0.74 -0.8

Or see this region's nucleotide sequence