Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20015 and EX31_RS20020 are separated by 117 nucleotides EX31_RS20020 and EX31_RS20025 are separated by 114 nucleotides
EX31_RS20015: EX31_RS20015 - alanine transaminase, at 632,160 to 633,419
_RS20015
EX31_RS20020: EX31_RS20020 - GNAT family N-acetyltransferase, at 633,537 to 634,076
_RS20020
EX31_RS20025: EX31_RS20025 - sensor histidine kinase, at 634,191 to 635,924
_RS20025
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 632.646 kb on - strand, within EX31_RS20015 at 632.654 kb on + strand, within EX31_RS20015 at 632.655 kb on - strand, within EX31_RS20015 at 632.655 kb on - strand, within EX31_RS20015 at 632.767 kb on + strand, within EX31_RS20015 at 632.767 kb on + strand, within EX31_RS20015 at 632.768 kb on - strand, within EX31_RS20015 at 632.768 kb on - strand, within EX31_RS20015 at 632.768 kb on - strand, within EX31_RS20015 at 632.768 kb on - strand, within EX31_RS20015 at 632.769 kb on + strand, within EX31_RS20015 at 632.770 kb on - strand, within EX31_RS20015 at 632.770 kb on - strand, within EX31_RS20015 at 632.770 kb on - strand, within EX31_RS20015 at 632.770 kb on - strand, within EX31_RS20015 at 632.770 kb on - strand, within EX31_RS20015 at 632.782 kb on + strand, within EX31_RS20015 at 632.812 kb on + strand, within EX31_RS20015 at 632.812 kb on + strand, within EX31_RS20015 at 632.812 kb on + strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 632.813 kb on - strand, within EX31_RS20015 at 633.010 kb on + strand, within EX31_RS20015 at 633.010 kb on + strand, within EX31_RS20015 at 633.010 kb on + strand, within EX31_RS20015 at 633.010 kb on + strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.011 kb on - strand, within EX31_RS20015 at 633.116 kb on + strand, within EX31_RS20015 at 633.161 kb on - strand, within EX31_RS20015 at 633.161 kb on - strand, within EX31_RS20015 at 633.211 kb on + strand, within EX31_RS20015 at 633.293 kb on + strand, within EX31_RS20015 at 633.364 kb on + strand at 633.365 kb on - strand at 633.383 kb on + strand at 633.383 kb on + strand at 633.383 kb on + strand at 633.383 kb on + strand at 633.383 kb on + strand at 633.384 kb on - strand at 633.384 kb on - strand at 633.384 kb on - strand at 633.384 kb on - strand at 633.384 kb on - strand at 633.419 kb on + strand at 633.420 kb on - strand at 633.420 kb on - strand at 633.438 kb on + strand at 633.438 kb on + strand at 633.438 kb on + strand at 633.438 kb on + strand at 633.438 kb on + strand at 633.438 kb on + strand at 633.439 kb on - strand at 633.439 kb on - strand at 633.439 kb on - strand at 633.484 kb on + strand at 633.484 kb on + strand at 633.484 kb on + strand at 633.484 kb on + strand at 633.484 kb on + strand at 633.485 kb on - strand at 633.485 kb on - strand at 633.485 kb on - strand at 633.485 kb on - strand at 633.492 kb on + strand at 633.492 kb on + strand at 633.538 kb on + strand at 633.761 kb on - strand, within EX31_RS20020 at 633.812 kb on + strand, within EX31_RS20020 at 633.812 kb on + strand, within EX31_RS20020 at 633.812 kb on + strand, within EX31_RS20020 at 633.812 kb on + strand, within EX31_RS20020 at 633.815 kb on - strand, within EX31_RS20020 at 633.905 kb on - strand, within EX31_RS20020 at 633.942 kb on - strand, within EX31_RS20020 at 634.000 kb on + strand, within EX31_RS20020 at 634.123 kb on + strand at 634.123 kb on + strand at 634.123 kb on + strand at 634.124 kb on - strand at 634.124 kb on - strand at 634.124 kb on - strand at 634.124 kb on - strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.127 kb on + strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.128 kb on - strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.129 kb on + strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.130 kb on - strand at 634.133 kb on - strand at 634.133 kb on - strand at 634.158 kb on + strand at 634.158 kb on + strand at 634.158 kb on + strand at 634.183 kb on - strand at 634.183 kb on - strand at 634.316 kb on + strand at 634.317 kb on - strand at 634.317 kb on - strand at 634.418 kb on + strand, within EX31_RS20025 at 634.419 kb on - strand, within EX31_RS20025 at 634.419 kb on - strand, within EX31_RS20025 at 634.472 kb on + strand, within EX31_RS20025 at 634.550 kb on + strand, within EX31_RS20025 at 634.551 kb on - strand, within EX31_RS20025 at 634.554 kb on - strand, within EX31_RS20025 at 634.554 kb on - strand, within EX31_RS20025 at 634.575 kb on + strand, within EX31_RS20025 at 634.577 kb on + strand, within EX31_RS20025 at 634.577 kb on + strand, within EX31_RS20025 at 634.577 kb on + strand, within EX31_RS20025 at 634.577 kb on + strand, within EX31_RS20025 at 634.578 kb on - strand, within EX31_RS20025 at 634.578 kb on - strand, within EX31_RS20025 at 634.578 kb on - strand, within EX31_RS20025 at 634.578 kb on - strand, within EX31_RS20025 at 634.619 kb on + strand, within EX31_RS20025 at 634.667 kb on - strand, within EX31_RS20025 at 634.839 kb on - strand, within EX31_RS20025 at 634.851 kb on + strand, within EX31_RS20025 at 634.851 kb on + strand, within EX31_RS20025 at 634.851 kb on + strand, within EX31_RS20025 at 634.862 kb on + strand, within EX31_RS20025 at 634.862 kb on + strand, within EX31_RS20025 at 634.863 kb on - strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.864 kb on + strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.865 kb on - strand, within EX31_RS20025 at 634.879 kb on + strand, within EX31_RS20025 at 634.879 kb on + strand, within EX31_RS20025 at 634.879 kb on + strand, within EX31_RS20025 at 634.879 kb on + strand, within EX31_RS20025 at 634.879 kb on + strand, within EX31_RS20025 at 634.880 kb on - strand, within EX31_RS20025 at 634.880 kb on - strand, within EX31_RS20025 at 634.880 kb on - strand, within EX31_RS20025 at 634.880 kb on - strand, within EX31_RS20025 at 634.892 kb on + strand, within EX31_RS20025 at 634.916 kb on + strand, within EX31_RS20025 at 634.916 kb on + strand, within EX31_RS20025 at 634.917 kb on - strand, within EX31_RS20025 at 634.922 kb on + strand, within EX31_RS20025 at 634.922 kb on + strand, within EX31_RS20025 at 634.922 kb on + strand, within EX31_RS20025 at 634.923 kb on - strand, within EX31_RS20025 at 634.928 kb on + strand, within EX31_RS20025 at 634.928 kb on + strand, within EX31_RS20025 at 634.928 kb on + strand, within EX31_RS20025 at 634.989 kb on + strand, within EX31_RS20025 at 635.014 kb on - strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.015 kb on + strand, within EX31_RS20025 at 635.016 kb on - strand, within EX31_RS20025 at 635.016 kb on - strand, within EX31_RS20025 at 635.016 kb on - strand, within EX31_RS20025 at 635.016 kb on - strand, within EX31_RS20025 at 635.016 kb on - strand, within EX31_RS20025
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 632,646 - EX31_RS20015 0.39 +0.5 632,654 + EX31_RS20015 0.39 -0.1 632,655 - EX31_RS20015 0.39 +0.1 632,655 - EX31_RS20015 0.39 +0.4 632,767 + EX31_RS20015 0.48 +0.2 632,767 + EX31_RS20015 0.48 -0.4 632,768 - EX31_RS20015 0.48 -0.6 632,768 - EX31_RS20015 0.48 -0.4 632,768 - EX31_RS20015 0.48 +0.3 632,768 - EX31_RS20015 0.48 -0.9 632,769 + EX31_RS20015 0.48 -0.0 632,770 - EX31_RS20015 0.48 -1.2 632,770 - EX31_RS20015 0.48 -0.2 632,770 - EX31_RS20015 0.48 +0.5 632,770 - EX31_RS20015 0.48 -0.3 632,770 - EX31_RS20015 0.48 -0.0 632,782 + EX31_RS20015 0.49 -1.9 632,812 + EX31_RS20015 0.52 -0.4 632,812 + EX31_RS20015 0.52 +0.1 632,812 + EX31_RS20015 0.52 +0.1 632,813 - EX31_RS20015 0.52 +0.8 632,813 - EX31_RS20015 0.52 -0.0 632,813 - EX31_RS20015 0.52 -0.6 632,813 - EX31_RS20015 0.52 +0.4 632,813 - EX31_RS20015 0.52 -0.6 632,813 - EX31_RS20015 0.52 +0.8 632,813 - EX31_RS20015 0.52 +0.4 633,010 + EX31_RS20015 0.67 +0.5 633,010 + EX31_RS20015 0.67 -0.2 633,010 + EX31_RS20015 0.67 +0.1 633,010 + EX31_RS20015 0.67 -0.2 633,011 - EX31_RS20015 0.68 +0.7 633,011 - EX31_RS20015 0.68 +0.4 633,011 - EX31_RS20015 0.68 +0.1 633,011 - EX31_RS20015 0.68 +0.4 633,011 - EX31_RS20015 0.68 -0.2 633,011 - EX31_RS20015 0.68 +0.4 633,116 + EX31_RS20015 0.76 -0.3 633,161 - EX31_RS20015 0.79 +0.1 633,161 - EX31_RS20015 0.79 +0.6 633,211 + EX31_RS20015 0.83 -0.0 633,293 + EX31_RS20015 0.90 +1.0 633,364 + -0.3 633,365 - -0.2 633,383 + +1.0 633,383 + -1.4 633,383 + +0.5 633,383 + +1.1 633,383 + -0.8 633,384 - -0.2 633,384 - -0.7 633,384 - -0.6 633,384 - +0.4 633,384 - -0.8 633,419 + -0.4 633,420 - -0.1 633,420 - -0.1 633,438 + -1.3 633,438 + +0.2 633,438 + +0.5 633,438 + +0.5 633,438 + -0.7 633,438 + -0.1 633,439 - -0.0 633,439 - -0.9 633,439 - +0.4 633,484 + -0.2 633,484 + -1.2 633,484 + +0.5 633,484 + -0.5 633,484 + +0.7 633,485 - -0.4 633,485 - -0.4 633,485 - -0.1 633,485 - -0.7 633,492 + +1.5 633,492 + +0.4 633,538 + +0.5 633,761 - EX31_RS20020 0.41 -0.0 633,812 + EX31_RS20020 0.51 +0.2 633,812 + EX31_RS20020 0.51 -0.6 633,812 + EX31_RS20020 0.51 -1.0 633,812 + EX31_RS20020 0.51 -0.2 633,815 - EX31_RS20020 0.51 -0.9 633,905 - EX31_RS20020 0.68 -0.4 633,942 - EX31_RS20020 0.75 -0.6 634,000 + EX31_RS20020 0.86 -0.7 634,123 + +0.9 634,123 + -0.7 634,123 + +1.2 634,124 - +0.5 634,124 - +0.3 634,124 - +0.7 634,124 - +0.7 634,127 + +0.3 634,127 + -0.0 634,127 + +0.7 634,127 + -0.0 634,127 + -1.1 634,127 + +0.2 634,127 + -1.1 634,127 + +0.6 634,127 + +1.6 634,127 + -0.1 634,127 + +1.2 634,127 + -1.1 634,127 + -0.3 634,127 + -0.3 634,128 - -0.2 634,128 - -1.8 634,128 - -0.7 634,128 - +0.2 634,128 - +0.2 634,128 - -0.0 634,128 - +0.1 634,128 - -0.4 634,128 - +0.5 634,128 - +0.9 634,128 - +0.2 634,128 - +1.3 634,128 - +0.2 634,128 - -0.6 634,129 + +0.0 634,129 + -1.5 634,129 + -0.3 634,129 + -0.3 634,129 + -0.7 634,129 + +1.0 634,129 + +0.1 634,129 + +0.5 634,129 + +0.6 634,130 - -0.5 634,130 - +0.1 634,130 - +0.7 634,130 - +0.2 634,130 - +0.8 634,130 - +0.6 634,130 - -0.0 634,130 - -0.8 634,130 - +0.3 634,130 - +0.7 634,130 - +0.4 634,130 - +0.6 634,133 - -0.2 634,133 - -0.1 634,158 + +0.5 634,158 + -0.3 634,158 + +1.1 634,183 - +0.4 634,183 - +0.2 634,316 + -0.6 634,317 - -2.7 634,317 - +0.6 634,418 + EX31_RS20025 0.13 +0.3 634,419 - EX31_RS20025 0.13 -0.4 634,419 - EX31_RS20025 0.13 +1.0 634,472 + EX31_RS20025 0.16 -0.4 634,550 + EX31_RS20025 0.21 +0.2 634,551 - EX31_RS20025 0.21 -0.4 634,554 - EX31_RS20025 0.21 +0.4 634,554 - EX31_RS20025 0.21 +0.4 634,575 + EX31_RS20025 0.22 -0.5 634,577 + EX31_RS20025 0.22 -0.6 634,577 + EX31_RS20025 0.22 +1.7 634,577 + EX31_RS20025 0.22 -1.0 634,577 + EX31_RS20025 0.22 -0.5 634,578 - EX31_RS20025 0.22 +0.8 634,578 - EX31_RS20025 0.22 +0.4 634,578 - EX31_RS20025 0.22 +0.5 634,578 - EX31_RS20025 0.22 +0.1 634,619 + EX31_RS20025 0.25 -0.3 634,667 - EX31_RS20025 0.27 -0.4 634,839 - EX31_RS20025 0.37 +0.3 634,851 + EX31_RS20025 0.38 +0.7 634,851 + EX31_RS20025 0.38 -0.4 634,851 + EX31_RS20025 0.38 +0.4 634,862 + EX31_RS20025 0.39 +0.1 634,862 + EX31_RS20025 0.39 -0.7 634,863 - EX31_RS20025 0.39 +0.9 634,864 + EX31_RS20025 0.39 -0.8 634,864 + EX31_RS20025 0.39 -1.0 634,864 + EX31_RS20025 0.39 -0.3 634,864 + EX31_RS20025 0.39 +0.2 634,864 + EX31_RS20025 0.39 -0.2 634,864 + EX31_RS20025 0.39 +1.1 634,864 + EX31_RS20025 0.39 -0.8 634,864 + EX31_RS20025 0.39 -1.0 634,864 + EX31_RS20025 0.39 +0.7 634,864 + EX31_RS20025 0.39 +0.0 634,864 + EX31_RS20025 0.39 -0.5 634,864 + EX31_RS20025 0.39 +1.1 634,864 + EX31_RS20025 0.39 -0.0 634,864 + EX31_RS20025 0.39 -0.3 634,865 - EX31_RS20025 0.39 +0.5 634,865 - EX31_RS20025 0.39 -0.9 634,865 - EX31_RS20025 0.39 -2.5 634,865 - EX31_RS20025 0.39 -0.2 634,865 - EX31_RS20025 0.39 -0.7 634,865 - EX31_RS20025 0.39 -0.4 634,865 - EX31_RS20025 0.39 +1.1 634,865 - EX31_RS20025 0.39 -0.3 634,879 + EX31_RS20025 0.40 -0.4 634,879 + EX31_RS20025 0.40 -0.8 634,879 + EX31_RS20025 0.40 +0.8 634,879 + EX31_RS20025 0.40 -0.7 634,879 + EX31_RS20025 0.40 -0.3 634,880 - EX31_RS20025 0.40 -0.4 634,880 - EX31_RS20025 0.40 +0.0 634,880 - EX31_RS20025 0.40 -1.5 634,880 - EX31_RS20025 0.40 -1.0 634,892 + EX31_RS20025 0.40 +0.1 634,916 + EX31_RS20025 0.42 -0.1 634,916 + EX31_RS20025 0.42 +0.1 634,917 - EX31_RS20025 0.42 +0.1 634,922 + EX31_RS20025 0.42 -0.4 634,922 + EX31_RS20025 0.42 -0.3 634,922 + EX31_RS20025 0.42 +0.1 634,923 - EX31_RS20025 0.42 -0.4 634,928 + EX31_RS20025 0.43 -0.0 634,928 + EX31_RS20025 0.43 -0.1 634,928 + EX31_RS20025 0.43 +1.4 634,989 + EX31_RS20025 0.46 -0.2 635,014 - EX31_RS20025 0.47 +0.6 635,015 + EX31_RS20025 0.48 -0.1 635,015 + EX31_RS20025 0.48 +0.5 635,015 + EX31_RS20025 0.48 -0.8 635,015 + EX31_RS20025 0.48 -0.3 635,015 + EX31_RS20025 0.48 +0.2 635,015 + EX31_RS20025 0.48 -0.2 635,016 - EX31_RS20025 0.48 -0.3 635,016 - EX31_RS20025 0.48 -1.1 635,016 - EX31_RS20025 0.48 -0.4 635,016 - EX31_RS20025 0.48 -0.8 635,016 - EX31_RS20025 0.48 +0.2
Or see this region's nucleotide sequence