Strain Fitness in Rahnella sp. WP5 around EX31_RS18935

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18930 and EX31_RS18935 are separated by 58 nucleotidesEX31_RS18935 and EX31_RS18940 are separated by 55 nucleotides EX31_RS18930: EX31_RS18930 - capsular biosynthesis protein, at 371,257 to 372,249 _RS18930 EX31_RS18935: EX31_RS18935 - sugar phosphotransferase, at 372,308 to 373,756 _RS18935 EX31_RS18940: EX31_RS18940 - glycosyltransferase family 61 protein, at 373,812 to 374,921 _RS18940 Position (kb) 372 373 374Strain fitness (log2 ratio) -1 0 1at 371.483 kb on + strand, within EX31_RS18930at 371.544 kb on + strand, within EX31_RS18930at 371.611 kb on + strand, within EX31_RS18930at 371.818 kb on + strand, within EX31_RS18930at 372.018 kb on + strand, within EX31_RS18930at 372.022 kb on + strand, within EX31_RS18930at 372.087 kb on + strand, within EX31_RS18930at 372.113 kb on + strand, within EX31_RS18930at 372.215 kb on + strandat 372.257 kb on + strandat 372.357 kb on + strandat 372.431 kb on + strandat 372.460 kb on - strand, within EX31_RS18935at 372.593 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.685 kb on + strand, within EX31_RS18935at 372.704 kb on + strand, within EX31_RS18935at 372.812 kb on + strand, within EX31_RS18935at 372.813 kb on - strand, within EX31_RS18935at 372.989 kb on + strand, within EX31_RS18935at 372.989 kb on + strand, within EX31_RS18935at 373.010 kb on - strand, within EX31_RS18935at 373.014 kb on - strand, within EX31_RS18935at 373.018 kb on - strand, within EX31_RS18935at 373.198 kb on + strand, within EX31_RS18935at 373.422 kb on + strand, within EX31_RS18935at 373.539 kb on + strand, within EX31_RS18935at 373.681 kb on + strandat 373.769 kb on + strandat 373.811 kb on - strandat 373.896 kb on - strandat 373.896 kb on - strandat 373.902 kb on + strandat 373.991 kb on + strand, within EX31_RS18940at 373.991 kb on + strand, within EX31_RS18940at 373.992 kb on - strand, within EX31_RS18940at 373.996 kb on - strand, within EX31_RS18940at 374.103 kb on + strand, within EX31_RS18940at 374.291 kb on + strand, within EX31_RS18940at 374.352 kb on + strand, within EX31_RS18940at 374.379 kb on - strand, within EX31_RS18940at 374.509 kb on + strand, within EX31_RS18940at 374.646 kb on - strand, within EX31_RS18940at 374.646 kb on - strand, within EX31_RS18940at 374.659 kb on + strand, within EX31_RS18940at 374.675 kb on + strand, within EX31_RS18940at 374.676 kb on - strand, within EX31_RS18940at 374.676 kb on - strand, within EX31_RS18940at 374.689 kb on - strand, within EX31_RS18940

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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371,483 + EX31_RS18930 0.23 +0.2
371,544 + EX31_RS18930 0.29 -1.4
371,611 + EX31_RS18930 0.36 -0.7
371,818 + EX31_RS18930 0.56 +0.3
372,018 + EX31_RS18930 0.77 -0.7
372,022 + EX31_RS18930 0.77 -0.2
372,087 + EX31_RS18930 0.84 +0.3
372,113 + EX31_RS18930 0.86 -0.3
372,215 + +0.2
372,257 + +0.2
372,357 + -0.2
372,431 + -0.3
372,460 - EX31_RS18935 0.10 -0.3
372,593 + EX31_RS18935 0.20 -0.7
372,601 + EX31_RS18935 0.20 -1.0
372,601 + EX31_RS18935 0.20 +0.1
372,601 + EX31_RS18935 0.20 -0.8
372,601 + EX31_RS18935 0.20 -0.1
372,685 + EX31_RS18935 0.26 -0.3
372,704 + EX31_RS18935 0.27 +0.2
372,812 + EX31_RS18935 0.35 +0.1
372,813 - EX31_RS18935 0.35 +0.3
372,989 + EX31_RS18935 0.47 -0.9
372,989 + EX31_RS18935 0.47 -0.2
373,010 - EX31_RS18935 0.48 -0.9
373,014 - EX31_RS18935 0.49 -1.3
373,018 - EX31_RS18935 0.49 -0.9
373,198 + EX31_RS18935 0.61 -0.6
373,422 + EX31_RS18935 0.77 +0.9
373,539 + EX31_RS18935 0.85 +0.2
373,681 + -0.6
373,769 + +0.3
373,811 - -0.3
373,896 - +0.0
373,896 - -0.5
373,902 + +0.6
373,991 + EX31_RS18940 0.16 +1.3
373,991 + EX31_RS18940 0.16 +0.6
373,992 - EX31_RS18940 0.16 -0.6
373,996 - EX31_RS18940 0.17 +0.7
374,103 + EX31_RS18940 0.26 -1.6
374,291 + EX31_RS18940 0.43 +0.4
374,352 + EX31_RS18940 0.49 -0.7
374,379 - EX31_RS18940 0.51 -0.2
374,509 + EX31_RS18940 0.63 -0.6
374,646 - EX31_RS18940 0.75 +0.5
374,646 - EX31_RS18940 0.75 -0.7
374,659 + EX31_RS18940 0.76 +0.2
374,675 + EX31_RS18940 0.78 +0.4
374,676 - EX31_RS18940 0.78 -0.3
374,676 - EX31_RS18940 0.78 -0.4
374,689 - EX31_RS18940 0.79 +0.7

Or see this region's nucleotide sequence