Strain Fitness in Rahnella sp. WP5 around EX31_RS18810

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18805 and EX31_RS18810 are separated by 224 nucleotidesEX31_RS18810 and EX31_RS18815 are separated by 90 nucleotides EX31_RS18805: EX31_RS18805 - LysR family transcriptional regulator, at 344,784 to 345,713 _RS18805 EX31_RS18810: EX31_RS18810 - GNAT family N-acetyltransferase, at 345,938 to 346,405 _RS18810 EX31_RS18815: EX31_RS18815 - choline dehydrogenase, at 346,496 to 348,181 _RS18815 Position (kb) 345 346 347Strain fitness (log2 ratio) -1 0 1at 344.946 kb on + strand, within EX31_RS18805at 345.143 kb on + strand, within EX31_RS18805at 345.144 kb on - strand, within EX31_RS18805at 345.192 kb on - strand, within EX31_RS18805at 345.309 kb on + strand, within EX31_RS18805at 345.309 kb on + strand, within EX31_RS18805at 345.402 kb on + strand, within EX31_RS18805at 345.451 kb on + strand, within EX31_RS18805at 345.464 kb on + strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.465 kb on - strand, within EX31_RS18805at 345.580 kb on - strand, within EX31_RS18805at 345.586 kb on + strand, within EX31_RS18805at 345.740 kb on + strandat 345.741 kb on - strandat 345.741 kb on - strandat 345.939 kb on + strandat 345.940 kb on - strandat 345.940 kb on - strandat 345.956 kb on + strandat 346.029 kb on + strand, within EX31_RS18810at 346.207 kb on - strand, within EX31_RS18810at 346.240 kb on + strand, within EX31_RS18810at 346.284 kb on + strand, within EX31_RS18810at 346.310 kb on + strand, within EX31_RS18810at 346.310 kb on + strand, within EX31_RS18810at 346.311 kb on - strand, within EX31_RS18810at 346.311 kb on - strand, within EX31_RS18810at 346.338 kb on + strand, within EX31_RS18810at 346.338 kb on + strand, within EX31_RS18810at 346.339 kb on - strand, within EX31_RS18810at 346.371 kb on + strandat 346.372 kb on - strandat 346.372 kb on - strandat 346.372 kb on - strandat 346.450 kb on - strandat 346.450 kb on - strandat 346.462 kb on - strandat 346.494 kb on + strandat 346.548 kb on + strandat 346.549 kb on - strandat 346.549 kb on - strandat 346.549 kb on - strandat 346.552 kb on - strandat 346.552 kb on - strandat 346.595 kb on - strandat 346.619 kb on - strandat 346.621 kb on + strandat 346.621 kb on + strandat 346.622 kb on - strandat 346.622 kb on - strandat 346.622 kb on - strandat 346.622 kb on - strandat 346.941 kb on + strand, within EX31_RS18815at 346.941 kb on + strand, within EX31_RS18815at 346.941 kb on + strand, within EX31_RS18815at 346.941 kb on + strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.942 kb on - strand, within EX31_RS18815at 346.945 kb on + strand, within EX31_RS18815at 346.946 kb on - strand, within EX31_RS18815at 347.060 kb on - strand, within EX31_RS18815at 347.060 kb on - strand, within EX31_RS18815at 347.070 kb on + strand, within EX31_RS18815at 347.071 kb on - strand, within EX31_RS18815at 347.071 kb on - strand, within EX31_RS18815at 347.071 kb on - strand, within EX31_RS18815at 347.075 kb on - strand, within EX31_RS18815at 347.075 kb on - strand, within EX31_RS18815at 347.257 kb on + strand, within EX31_RS18815at 347.257 kb on + strand, within EX31_RS18815at 347.258 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815at 347.266 kb on - strand, within EX31_RS18815

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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344,946 + EX31_RS18805 0.17 -0.4
345,143 + EX31_RS18805 0.39 -0.1
345,144 - EX31_RS18805 0.39 -0.1
345,192 - EX31_RS18805 0.44 -0.9
345,309 + EX31_RS18805 0.56 -0.0
345,309 + EX31_RS18805 0.56 +0.9
345,402 + EX31_RS18805 0.66 -0.3
345,451 + EX31_RS18805 0.72 +0.7
345,464 + EX31_RS18805 0.73 -0.4
345,465 - EX31_RS18805 0.73 +0.0
345,465 - EX31_RS18805 0.73 -1.0
345,465 - EX31_RS18805 0.73 +0.5
345,580 - EX31_RS18805 0.86 +0.5
345,586 + EX31_RS18805 0.86 -0.3
345,740 + +0.5
345,741 - +0.7
345,741 - +0.6
345,939 + -0.6
345,940 - -0.3
345,940 - +0.5
345,956 + +0.8
346,029 + EX31_RS18810 0.19 +0.4
346,207 - EX31_RS18810 0.57 -0.7
346,240 + EX31_RS18810 0.65 -0.0
346,284 + EX31_RS18810 0.74 -0.4
346,310 + EX31_RS18810 0.79 +0.3
346,310 + EX31_RS18810 0.79 -0.3
346,311 - EX31_RS18810 0.80 +1.2
346,311 - EX31_RS18810 0.80 -1.1
346,338 + EX31_RS18810 0.85 -0.5
346,338 + EX31_RS18810 0.85 -0.2
346,339 - EX31_RS18810 0.86 -0.9
346,371 + +0.3
346,372 - -1.4
346,372 - +0.3
346,372 - -0.1
346,450 - +0.1
346,450 - +0.3
346,462 - -0.3
346,494 + +0.8
346,548 + +0.2
346,549 - +0.2
346,549 - -1.6
346,549 - +0.4
346,552 - -0.1
346,552 - -0.5
346,595 - +0.2
346,619 - +0.6
346,621 + -0.1
346,621 + +0.6
346,622 - -0.1
346,622 - -0.4
346,622 - -0.4
346,622 - +0.4
346,941 + EX31_RS18815 0.26 -0.2
346,941 + EX31_RS18815 0.26 +0.6
346,941 + EX31_RS18815 0.26 -0.9
346,941 + EX31_RS18815 0.26 -0.0
346,942 - EX31_RS18815 0.26 -0.4
346,942 - EX31_RS18815 0.26 -0.8
346,942 - EX31_RS18815 0.26 -0.6
346,942 - EX31_RS18815 0.26 -0.0
346,942 - EX31_RS18815 0.26 +0.2
346,942 - EX31_RS18815 0.26 -1.1
346,942 - EX31_RS18815 0.26 +0.8
346,945 + EX31_RS18815 0.27 -0.8
346,946 - EX31_RS18815 0.27 -0.6
347,060 - EX31_RS18815 0.33 -0.3
347,060 - EX31_RS18815 0.33 +0.9
347,070 + EX31_RS18815 0.34 +0.5
347,071 - EX31_RS18815 0.34 -0.2
347,071 - EX31_RS18815 0.34 -0.3
347,071 - EX31_RS18815 0.34 +1.1
347,075 - EX31_RS18815 0.34 +0.1
347,075 - EX31_RS18815 0.34 -0.3
347,257 + EX31_RS18815 0.45 +1.0
347,257 + EX31_RS18815 0.45 -0.6
347,258 - EX31_RS18815 0.45 -0.1
347,266 - EX31_RS18815 0.46 -0.8
347,266 - EX31_RS18815 0.46 +0.3
347,266 - EX31_RS18815 0.46 +0.2
347,266 - EX31_RS18815 0.46 +0.3
347,266 - EX31_RS18815 0.46 +0.7
347,266 - EX31_RS18815 0.46 +0.3
347,266 - EX31_RS18815 0.46 +0.4

Or see this region's nucleotide sequence