Strain Fitness in Rahnella sp. WP5 around EX31_RS18485

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18475 and EX31_RS18480 are separated by 133 nucleotidesEX31_RS18480 and EX31_RS18485 overlap by 1 nucleotidesEX31_RS18485 and EX31_RS18490 are separated by 69 nucleotidesEX31_RS18490 and EX31_RS18495 are separated by 1 nucleotides EX31_RS18475: EX31_RS18475 - MFS transporter, at 264,853 to 265,998 _RS18475 EX31_RS18480: EX31_RS18480 - ferredoxin-type protein NapF, at 266,132 to 266,704 _RS18480 EX31_RS18485: EX31_RS18485 - Tat proofreading chaperone DmsD, at 266,704 to 267,312 _RS18485 EX31_RS18490: EX31_RS18490 - dimethyl sulfoxide reductase anchor subunit, at 267,382 to 268,239 _RS18490 EX31_RS18495: EX31_RS18495 - dimethylsulfoxide reductase subunit B, at 268,241 to 268,858 _RS18495 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.723 kb on + strand, within EX31_RS18475at 265.775 kb on + strand, within EX31_RS18475at 265.775 kb on + strand, within EX31_RS18475at 265.776 kb on - strand, within EX31_RS18475at 265.776 kb on - strand, within EX31_RS18475at 265.778 kb on + strand, within EX31_RS18475at 265.778 kb on + strand, within EX31_RS18475at 265.779 kb on - strand, within EX31_RS18475at 265.804 kb on - strand, within EX31_RS18475at 265.827 kb on + strand, within EX31_RS18475at 265.846 kb on - strand, within EX31_RS18475at 265.851 kb on - strand, within EX31_RS18475at 265.988 kb on + strandat 265.999 kb on - strandat 265.999 kb on - strandat 266.055 kb on + strandat 266.055 kb on + strandat 266.134 kb on - strandat 266.327 kb on - strand, within EX31_RS18480at 266.392 kb on + strand, within EX31_RS18480at 266.392 kb on + strand, within EX31_RS18480at 266.422 kb on - strand, within EX31_RS18480at 266.459 kb on + strand, within EX31_RS18480at 266.459 kb on + strand, within EX31_RS18480at 266.460 kb on - strand, within EX31_RS18480at 266.461 kb on + strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.462 kb on - strand, within EX31_RS18480at 266.634 kb on - strand, within EX31_RS18480at 266.677 kb on - strandat 266.679 kb on + strandat 266.680 kb on - strandat 266.680 kb on - strandat 266.680 kb on - strandat 266.711 kb on + strandat 266.712 kb on - strandat 266.712 kb on - strandat 266.739 kb on + strandat 266.739 kb on + strandat 266.739 kb on + strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.740 kb on - strandat 266.761 kb on + strandat 266.761 kb on + strandat 266.762 kb on - strandat 266.780 kb on - strand, within EX31_RS18485at 266.855 kb on - strand, within EX31_RS18485at 267.078 kb on - strand, within EX31_RS18485at 267.217 kb on + strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.223 kb on - strand, within EX31_RS18485at 267.226 kb on + strand, within EX31_RS18485at 267.227 kb on - strand, within EX31_RS18485at 267.294 kb on + strandat 267.313 kb on - strandat 267.313 kb on - strandat 267.343 kb on - strandat 267.411 kb on + strandat 267.411 kb on + strandat 267.412 kb on - strandat 267.423 kb on - strandat 267.502 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.509 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.511 kb on - strand, within EX31_RS18490at 267.579 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.661 kb on - strand, within EX31_RS18490at 267.704 kb on - strand, within EX31_RS18490at 267.717 kb on + strand, within EX31_RS18490at 267.718 kb on - strand, within EX31_RS18490at 267.718 kb on - strand, within EX31_RS18490at 267.718 kb on - strand, within EX31_RS18490at 267.720 kb on + strand, within EX31_RS18490at 267.720 kb on + strand, within EX31_RS18490at 267.720 kb on + strand, within EX31_RS18490at 267.721 kb on - strand, within EX31_RS18490at 267.721 kb on - strand, within EX31_RS18490at 267.721 kb on - strand, within EX31_RS18490at 267.721 kb on - strand, within EX31_RS18490at 267.721 kb on - strand, within EX31_RS18490at 267.723 kb on + strand, within EX31_RS18490at 267.723 kb on + strand, within EX31_RS18490at 267.724 kb on - strand, within EX31_RS18490at 267.724 kb on - strand, within EX31_RS18490at 267.744 kb on - strand, within EX31_RS18490at 267.795 kb on + strand, within EX31_RS18490at 267.798 kb on - strand, within EX31_RS18490at 267.798 kb on - strand, within EX31_RS18490at 267.822 kb on + strand, within EX31_RS18490at 267.823 kb on - strand, within EX31_RS18490at 267.833 kb on + strand, within EX31_RS18490at 267.833 kb on + strand, within EX31_RS18490at 267.834 kb on - strand, within EX31_RS18490at 267.834 kb on - strand, within EX31_RS18490at 267.834 kb on - strand, within EX31_RS18490at 267.834 kb on - strand, within EX31_RS18490at 267.834 kb on - strand, within EX31_RS18490at 267.941 kb on + strand, within EX31_RS18490at 267.941 kb on + strand, within EX31_RS18490at 267.941 kb on + strand, within EX31_RS18490at 268.122 kb on - strand, within EX31_RS18490at 268.168 kb on - strandat 268.168 kb on - strandat 268.267 kb on - strandat 268.267 kb on - strandat 268.277 kb on - strandat 268.310 kb on - strand, within EX31_RS18495at 268.310 kb on - strand, within EX31_RS18495

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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265,723 + EX31_RS18475 0.76 -2.0
265,775 + EX31_RS18475 0.80 -2.8
265,775 + EX31_RS18475 0.80 -0.6
265,776 - EX31_RS18475 0.81 -0.7
265,776 - EX31_RS18475 0.81 -1.3
265,778 + EX31_RS18475 0.81 -1.5
265,778 + EX31_RS18475 0.81 -0.5
265,779 - EX31_RS18475 0.81 +0.8
265,804 - EX31_RS18475 0.83 +0.1
265,827 + EX31_RS18475 0.85 +1.0
265,846 - EX31_RS18475 0.87 +1.3
265,851 - EX31_RS18475 0.87 -1.1
265,988 + +0.3
265,999 - +0.4
265,999 - -0.9
266,055 + -0.3
266,055 + -1.9
266,134 - -0.2
266,327 - EX31_RS18480 0.34 +1.0
266,392 + EX31_RS18480 0.45 +2.2
266,392 + EX31_RS18480 0.45 +0.2
266,422 - EX31_RS18480 0.51 +0.7
266,459 + EX31_RS18480 0.57 +0.2
266,459 + EX31_RS18480 0.57 -0.7
266,460 - EX31_RS18480 0.57 -0.6
266,461 + EX31_RS18480 0.57 +0.5
266,462 - EX31_RS18480 0.58 -0.9
266,462 - EX31_RS18480 0.58 +0.7
266,462 - EX31_RS18480 0.58 +0.4
266,634 - EX31_RS18480 0.88 -0.0
266,677 - -0.3
266,679 + -1.8
266,680 - -1.2
266,680 - -1.4
266,680 - +0.0
266,711 + +0.1
266,712 - -0.0
266,712 - -0.1
266,739 + +0.9
266,739 + -1.2
266,739 + +0.4
266,740 - +0.9
266,740 - +1.4
266,740 - -0.5
266,740 - +0.3
266,740 - -0.1
266,740 - +0.1
266,761 + -0.4
266,761 + -0.1
266,762 - +0.3
266,780 - EX31_RS18485 0.12 -0.2
266,855 - EX31_RS18485 0.25 +0.3
267,078 - EX31_RS18485 0.61 -0.1
267,217 + EX31_RS18485 0.84 -0.6
267,223 - EX31_RS18485 0.85 -2.6
267,223 - EX31_RS18485 0.85 -0.4
267,223 - EX31_RS18485 0.85 +0.3
267,223 - EX31_RS18485 0.85 -0.5
267,223 - EX31_RS18485 0.85 -0.6
267,226 + EX31_RS18485 0.86 -0.7
267,227 - EX31_RS18485 0.86 -0.2
267,294 + -0.2
267,313 - -0.2
267,313 - -0.6
267,343 - +1.0
267,411 + -1.0
267,411 + -0.9
267,412 - +0.1
267,423 - -0.8
267,502 - EX31_RS18490 0.14 +0.8
267,509 - EX31_RS18490 0.15 +1.3
267,509 - EX31_RS18490 0.15 -0.1
267,509 - EX31_RS18490 0.15 +0.5
267,509 - EX31_RS18490 0.15 -0.8
267,509 - EX31_RS18490 0.15 +0.6
267,509 - EX31_RS18490 0.15 +0.3
267,511 - EX31_RS18490 0.15 +0.4
267,511 - EX31_RS18490 0.15 +0.1
267,511 - EX31_RS18490 0.15 +0.7
267,511 - EX31_RS18490 0.15 -1.5
267,511 - EX31_RS18490 0.15 -1.1
267,511 - EX31_RS18490 0.15 +0.1
267,511 - EX31_RS18490 0.15 +0.0
267,579 - EX31_RS18490 0.23 +0.6
267,661 - EX31_RS18490 0.33 +0.7
267,661 - EX31_RS18490 0.33 -0.5
267,661 - EX31_RS18490 0.33 -0.2
267,704 - EX31_RS18490 0.38 +0.6
267,717 + EX31_RS18490 0.39 +0.7
267,718 - EX31_RS18490 0.39 -0.4
267,718 - EX31_RS18490 0.39 +0.0
267,718 - EX31_RS18490 0.39 +0.6
267,720 + EX31_RS18490 0.39 -0.2
267,720 + EX31_RS18490 0.39 -0.8
267,720 + EX31_RS18490 0.39 -0.1
267,721 - EX31_RS18490 0.40 -0.6
267,721 - EX31_RS18490 0.40 -0.7
267,721 - EX31_RS18490 0.40 +0.2
267,721 - EX31_RS18490 0.40 +0.1
267,721 - EX31_RS18490 0.40 -0.0
267,723 + EX31_RS18490 0.40 -0.7
267,723 + EX31_RS18490 0.40 -0.4
267,724 - EX31_RS18490 0.40 -0.8
267,724 - EX31_RS18490 0.40 -1.6
267,744 - EX31_RS18490 0.42 -0.4
267,795 + EX31_RS18490 0.48 +0.9
267,798 - EX31_RS18490 0.48 +0.5
267,798 - EX31_RS18490 0.48 -0.9
267,822 + EX31_RS18490 0.51 +0.6
267,823 - EX31_RS18490 0.51 +0.5
267,833 + EX31_RS18490 0.53 +0.0
267,833 + EX31_RS18490 0.53 +0.4
267,834 - EX31_RS18490 0.53 +0.1
267,834 - EX31_RS18490 0.53 +0.2
267,834 - EX31_RS18490 0.53 -0.6
267,834 - EX31_RS18490 0.53 +0.7
267,834 - EX31_RS18490 0.53 -0.9
267,941 + EX31_RS18490 0.65 +0.9
267,941 + EX31_RS18490 0.65 -0.3
267,941 + EX31_RS18490 0.65 -0.6
268,122 - EX31_RS18490 0.86 -0.7
268,168 - -0.1
268,168 - +0.3
268,267 - +0.3
268,267 - +0.7
268,277 - -1.4
268,310 - EX31_RS18495 0.11 -2.0
268,310 - EX31_RS18495 0.11 +0.7

Or see this region's nucleotide sequence