Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18475 and EX31_RS18480 are separated by 133 nucleotides EX31_RS18480 and EX31_RS18485 overlap by 1 nucleotides EX31_RS18485 and EX31_RS18490 are separated by 69 nucleotides EX31_RS18490 and EX31_RS18495 are separated by 1 nucleotides
EX31_RS18475: EX31_RS18475 - MFS transporter, at 264,853 to 265,998
_RS18475
EX31_RS18480: EX31_RS18480 - ferredoxin-type protein NapF, at 266,132 to 266,704
_RS18480
EX31_RS18485: EX31_RS18485 - Tat proofreading chaperone DmsD, at 266,704 to 267,312
_RS18485
EX31_RS18490: EX31_RS18490 - dimethyl sulfoxide reductase anchor subunit, at 267,382 to 268,239
_RS18490
EX31_RS18495: EX31_RS18495 - dimethylsulfoxide reductase subunit B, at 268,241 to 268,858
_RS18495
Position (kb)
266
267
268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 265.723 kb on + strand, within EX31_RS18475 at 265.775 kb on + strand, within EX31_RS18475 at 265.775 kb on + strand, within EX31_RS18475 at 265.776 kb on - strand, within EX31_RS18475 at 265.776 kb on - strand, within EX31_RS18475 at 265.778 kb on + strand, within EX31_RS18475 at 265.778 kb on + strand, within EX31_RS18475 at 265.779 kb on - strand, within EX31_RS18475 at 265.804 kb on - strand, within EX31_RS18475 at 265.827 kb on + strand, within EX31_RS18475 at 265.846 kb on - strand, within EX31_RS18475 at 265.851 kb on - strand, within EX31_RS18475 at 265.988 kb on + strand at 265.999 kb on - strand at 265.999 kb on - strand at 266.055 kb on + strand at 266.055 kb on + strand at 266.134 kb on - strand at 266.327 kb on - strand, within EX31_RS18480 at 266.392 kb on + strand, within EX31_RS18480 at 266.392 kb on + strand, within EX31_RS18480 at 266.422 kb on - strand, within EX31_RS18480 at 266.459 kb on + strand, within EX31_RS18480 at 266.459 kb on + strand, within EX31_RS18480 at 266.460 kb on - strand, within EX31_RS18480 at 266.461 kb on + strand, within EX31_RS18480 at 266.462 kb on - strand, within EX31_RS18480 at 266.462 kb on - strand, within EX31_RS18480 at 266.462 kb on - strand, within EX31_RS18480 at 266.634 kb on - strand, within EX31_RS18480 at 266.677 kb on - strand at 266.679 kb on + strand at 266.680 kb on - strand at 266.680 kb on - strand at 266.680 kb on - strand at 266.711 kb on + strand at 266.712 kb on - strand at 266.712 kb on - strand at 266.739 kb on + strand at 266.739 kb on + strand at 266.739 kb on + strand at 266.740 kb on - strand at 266.740 kb on - strand at 266.740 kb on - strand at 266.740 kb on - strand at 266.740 kb on - strand at 266.740 kb on - strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.762 kb on - strand at 266.780 kb on - strand, within EX31_RS18485 at 266.855 kb on - strand, within EX31_RS18485 at 267.078 kb on - strand, within EX31_RS18485 at 267.217 kb on + strand, within EX31_RS18485 at 267.223 kb on - strand, within EX31_RS18485 at 267.223 kb on - strand, within EX31_RS18485 at 267.223 kb on - strand, within EX31_RS18485 at 267.223 kb on - strand, within EX31_RS18485 at 267.223 kb on - strand, within EX31_RS18485 at 267.226 kb on + strand, within EX31_RS18485 at 267.227 kb on - strand, within EX31_RS18485 at 267.294 kb on + strand at 267.313 kb on - strand at 267.313 kb on - strand at 267.343 kb on - strand at 267.411 kb on + strand at 267.411 kb on + strand at 267.412 kb on - strand at 267.423 kb on - strand at 267.502 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.509 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.511 kb on - strand, within EX31_RS18490 at 267.579 kb on - strand, within EX31_RS18490 at 267.661 kb on - strand, within EX31_RS18490 at 267.661 kb on - strand, within EX31_RS18490 at 267.661 kb on - strand, within EX31_RS18490 at 267.704 kb on - strand, within EX31_RS18490 at 267.717 kb on + strand, within EX31_RS18490 at 267.718 kb on - strand, within EX31_RS18490 at 267.718 kb on - strand, within EX31_RS18490 at 267.718 kb on - strand, within EX31_RS18490 at 267.720 kb on + strand, within EX31_RS18490 at 267.720 kb on + strand, within EX31_RS18490 at 267.720 kb on + strand, within EX31_RS18490 at 267.721 kb on - strand, within EX31_RS18490 at 267.721 kb on - strand, within EX31_RS18490 at 267.721 kb on - strand, within EX31_RS18490 at 267.721 kb on - strand, within EX31_RS18490 at 267.721 kb on - strand, within EX31_RS18490 at 267.723 kb on + strand, within EX31_RS18490 at 267.723 kb on + strand, within EX31_RS18490 at 267.724 kb on - strand, within EX31_RS18490 at 267.724 kb on - strand, within EX31_RS18490 at 267.744 kb on - strand, within EX31_RS18490 at 267.795 kb on + strand, within EX31_RS18490 at 267.798 kb on - strand, within EX31_RS18490 at 267.798 kb on - strand, within EX31_RS18490 at 267.822 kb on + strand, within EX31_RS18490 at 267.823 kb on - strand, within EX31_RS18490 at 267.833 kb on + strand, within EX31_RS18490 at 267.833 kb on + strand, within EX31_RS18490 at 267.834 kb on - strand, within EX31_RS18490 at 267.834 kb on - strand, within EX31_RS18490 at 267.834 kb on - strand, within EX31_RS18490 at 267.834 kb on - strand, within EX31_RS18490 at 267.834 kb on - strand, within EX31_RS18490 at 267.941 kb on + strand, within EX31_RS18490 at 267.941 kb on + strand, within EX31_RS18490 at 267.941 kb on + strand, within EX31_RS18490 at 268.122 kb on - strand, within EX31_RS18490 at 268.168 kb on - strand at 268.168 kb on - strand at 268.267 kb on - strand at 268.267 kb on - strand at 268.277 kb on - strand at 268.310 kb on - strand, within EX31_RS18495 at 268.310 kb on - strand, within EX31_RS18495
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 265,723 + EX31_RS18475 0.76 -2.0 265,775 + EX31_RS18475 0.80 -2.8 265,775 + EX31_RS18475 0.80 -0.6 265,776 - EX31_RS18475 0.81 -0.7 265,776 - EX31_RS18475 0.81 -1.3 265,778 + EX31_RS18475 0.81 -1.5 265,778 + EX31_RS18475 0.81 -0.5 265,779 - EX31_RS18475 0.81 +0.8 265,804 - EX31_RS18475 0.83 +0.1 265,827 + EX31_RS18475 0.85 +1.0 265,846 - EX31_RS18475 0.87 +1.3 265,851 - EX31_RS18475 0.87 -1.1 265,988 + +0.3 265,999 - +0.4 265,999 - -0.9 266,055 + -0.3 266,055 + -1.9 266,134 - -0.2 266,327 - EX31_RS18480 0.34 +1.0 266,392 + EX31_RS18480 0.45 +2.2 266,392 + EX31_RS18480 0.45 +0.2 266,422 - EX31_RS18480 0.51 +0.7 266,459 + EX31_RS18480 0.57 +0.2 266,459 + EX31_RS18480 0.57 -0.7 266,460 - EX31_RS18480 0.57 -0.6 266,461 + EX31_RS18480 0.57 +0.5 266,462 - EX31_RS18480 0.58 -0.9 266,462 - EX31_RS18480 0.58 +0.7 266,462 - EX31_RS18480 0.58 +0.4 266,634 - EX31_RS18480 0.88 -0.0 266,677 - -0.3 266,679 + -1.8 266,680 - -1.2 266,680 - -1.4 266,680 - +0.0 266,711 + +0.1 266,712 - -0.0 266,712 - -0.1 266,739 + +0.9 266,739 + -1.2 266,739 + +0.4 266,740 - +0.9 266,740 - +1.4 266,740 - -0.5 266,740 - +0.3 266,740 - -0.1 266,740 - +0.1 266,761 + -0.4 266,761 + -0.1 266,762 - +0.3 266,780 - EX31_RS18485 0.12 -0.2 266,855 - EX31_RS18485 0.25 +0.3 267,078 - EX31_RS18485 0.61 -0.1 267,217 + EX31_RS18485 0.84 -0.6 267,223 - EX31_RS18485 0.85 -2.6 267,223 - EX31_RS18485 0.85 -0.4 267,223 - EX31_RS18485 0.85 +0.3 267,223 - EX31_RS18485 0.85 -0.5 267,223 - EX31_RS18485 0.85 -0.6 267,226 + EX31_RS18485 0.86 -0.7 267,227 - EX31_RS18485 0.86 -0.2 267,294 + -0.2 267,313 - -0.2 267,313 - -0.6 267,343 - +1.0 267,411 + -1.0 267,411 + -0.9 267,412 - +0.1 267,423 - -0.8 267,502 - EX31_RS18490 0.14 +0.8 267,509 - EX31_RS18490 0.15 +1.3 267,509 - EX31_RS18490 0.15 -0.1 267,509 - EX31_RS18490 0.15 +0.5 267,509 - EX31_RS18490 0.15 -0.8 267,509 - EX31_RS18490 0.15 +0.6 267,509 - EX31_RS18490 0.15 +0.3 267,511 - EX31_RS18490 0.15 +0.4 267,511 - EX31_RS18490 0.15 +0.1 267,511 - EX31_RS18490 0.15 +0.7 267,511 - EX31_RS18490 0.15 -1.5 267,511 - EX31_RS18490 0.15 -1.1 267,511 - EX31_RS18490 0.15 +0.1 267,511 - EX31_RS18490 0.15 +0.0 267,579 - EX31_RS18490 0.23 +0.6 267,661 - EX31_RS18490 0.33 +0.7 267,661 - EX31_RS18490 0.33 -0.5 267,661 - EX31_RS18490 0.33 -0.2 267,704 - EX31_RS18490 0.38 +0.6 267,717 + EX31_RS18490 0.39 +0.7 267,718 - EX31_RS18490 0.39 -0.4 267,718 - EX31_RS18490 0.39 +0.0 267,718 - EX31_RS18490 0.39 +0.6 267,720 + EX31_RS18490 0.39 -0.2 267,720 + EX31_RS18490 0.39 -0.8 267,720 + EX31_RS18490 0.39 -0.1 267,721 - EX31_RS18490 0.40 -0.6 267,721 - EX31_RS18490 0.40 -0.7 267,721 - EX31_RS18490 0.40 +0.2 267,721 - EX31_RS18490 0.40 +0.1 267,721 - EX31_RS18490 0.40 -0.0 267,723 + EX31_RS18490 0.40 -0.7 267,723 + EX31_RS18490 0.40 -0.4 267,724 - EX31_RS18490 0.40 -0.8 267,724 - EX31_RS18490 0.40 -1.6 267,744 - EX31_RS18490 0.42 -0.4 267,795 + EX31_RS18490 0.48 +0.9 267,798 - EX31_RS18490 0.48 +0.5 267,798 - EX31_RS18490 0.48 -0.9 267,822 + EX31_RS18490 0.51 +0.6 267,823 - EX31_RS18490 0.51 +0.5 267,833 + EX31_RS18490 0.53 +0.0 267,833 + EX31_RS18490 0.53 +0.4 267,834 - EX31_RS18490 0.53 +0.1 267,834 - EX31_RS18490 0.53 +0.2 267,834 - EX31_RS18490 0.53 -0.6 267,834 - EX31_RS18490 0.53 +0.7 267,834 - EX31_RS18490 0.53 -0.9 267,941 + EX31_RS18490 0.65 +0.9 267,941 + EX31_RS18490 0.65 -0.3 267,941 + EX31_RS18490 0.65 -0.6 268,122 - EX31_RS18490 0.86 -0.7 268,168 - -0.1 268,168 - +0.3 268,267 - +0.3 268,267 - +0.7 268,277 - -1.4 268,310 - EX31_RS18495 0.11 -2.0 268,310 - EX31_RS18495 0.11 +0.7
Or see this region's nucleotide sequence