Strain Fitness in Rahnella sp. WP5 around EX31_RS16800

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16790 and EX31_RS16795 overlap by 4 nucleotidesEX31_RS16795 and EX31_RS16800 are separated by 1 nucleotidesEX31_RS16800 and EX31_RS16805 overlap by 4 nucleotidesEX31_RS16805 and EX31_RS16810 overlap by 8 nucleotides EX31_RS16790: EX31_RS16790 - 2-iminoacetate synthase ThiH, at 13,540 to 14,718 _RS16790 EX31_RS16795: EX31_RS16795 - thiazole synthase, at 14,715 to 15,494 _RS16795 EX31_RS16800: EX31_RS16800 - sulfur carrier protein ThiS, at 15,496 to 15,696 _RS16800 EX31_RS16805: EX31_RS16805 - HesA/MoeB/ThiF family protein, at 15,693 to 16,442 _RS16805 EX31_RS16810: EX31_RS16810 - thiamine phosphate synthase, at 16,435 to 17,088 _RS16810 Position (kb) 15 16Strain fitness (log2 ratio) -2 -1 0 1at 14.561 kb on + strand, within EX31_RS16790at 14.562 kb on - strand, within EX31_RS16790at 14.661 kb on + strandat 14.673 kb on + strandat 14.673 kb on + strandat 14.674 kb on - strandat 14.674 kb on - strandat 14.712 kb on + strandat 14.712 kb on + strandat 14.713 kb on - strandat 14.713 kb on - strandat 14.713 kb on - strandat 14.735 kb on + strandat 14.736 kb on - strandat 14.736 kb on - strandat 14.791 kb on - strandat 15.184 kb on + strand, within EX31_RS16795at 15.258 kb on + strand, within EX31_RS16795at 15.258 kb on + strand, within EX31_RS16795at 15.259 kb on - strand, within EX31_RS16795at 15.279 kb on - strand, within EX31_RS16795at 15.290 kb on + strand, within EX31_RS16795at 15.290 kb on + strand, within EX31_RS16795at 15.290 kb on + strand, within EX31_RS16795at 15.291 kb on - strand, within EX31_RS16795at 15.291 kb on - strand, within EX31_RS16795at 15.335 kb on + strand, within EX31_RS16795at 15.335 kb on + strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.336 kb on - strand, within EX31_RS16795at 15.377 kb on + strand, within EX31_RS16795at 15.476 kb on + strandat 15.476 kb on + strandat 15.477 kb on - strandat 15.477 kb on - strandat 15.477 kb on - strandat 15.490 kb on - strandat 15.564 kb on + strand, within EX31_RS16800at 15.565 kb on - strand, within EX31_RS16800at 15.565 kb on - strand, within EX31_RS16800at 15.617 kb on - strand, within EX31_RS16800at 15.617 kb on - strand, within EX31_RS16800at 15.641 kb on - strand, within EX31_RS16800at 15.641 kb on - strand, within EX31_RS16800at 15.641 kb on - strand, within EX31_RS16800at 15.780 kb on + strand, within EX31_RS16805at 15.781 kb on - strand, within EX31_RS16805at 15.781 kb on - strand, within EX31_RS16805at 15.781 kb on - strand, within EX31_RS16805at 15.845 kb on + strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.846 kb on - strand, within EX31_RS16805at 15.884 kb on + strand, within EX31_RS16805at 15.885 kb on - strand, within EX31_RS16805at 15.885 kb on - strand, within EX31_RS16805at 15.900 kb on + strand, within EX31_RS16805at 15.920 kb on - strand, within EX31_RS16805at 15.921 kb on + strand, within EX31_RS16805at 15.921 kb on + strand, within EX31_RS16805at 15.921 kb on + strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.922 kb on - strand, within EX31_RS16805at 15.931 kb on + strand, within EX31_RS16805at 16.011 kb on - strand, within EX31_RS16805at 16.011 kb on - strand, within EX31_RS16805at 16.031 kb on + strand, within EX31_RS16805at 16.032 kb on - strand, within EX31_RS16805at 16.035 kb on - strand, within EX31_RS16805at 16.058 kb on + strand, within EX31_RS16805at 16.058 kb on + strand, within EX31_RS16805at 16.214 kb on + strand, within EX31_RS16805at 16.247 kb on + strand, within EX31_RS16805at 16.248 kb on - strand, within EX31_RS16805at 16.248 kb on - strand, within EX31_RS16805at 16.280 kb on + strand, within EX31_RS16805at 16.280 kb on + strand, within EX31_RS16805at 16.280 kb on + strand, within EX31_RS16805at 16.281 kb on - strand, within EX31_RS16805at 16.281 kb on - strand, within EX31_RS16805at 16.281 kb on - strand, within EX31_RS16805at 16.281 kb on - strand, within EX31_RS16805at 16.284 kb on + strand, within EX31_RS16805at 16.284 kb on + strand, within EX31_RS16805at 16.284 kb on + strand, within EX31_RS16805at 16.285 kb on - strand, within EX31_RS16805at 16.285 kb on - strand, within EX31_RS16805at 16.285 kb on - strand, within EX31_RS16805at 16.285 kb on - strand, within EX31_RS16805at 16.285 kb on - strand, within EX31_RS16805at 16.303 kb on + strand, within EX31_RS16805at 16.303 kb on + strand, within EX31_RS16805at 16.303 kb on + strand, within EX31_RS16805at 16.304 kb on - strand, within EX31_RS16805at 16.304 kb on - strand, within EX31_RS16805at 16.304 kb on - strand, within EX31_RS16805at 16.304 kb on - strand, within EX31_RS16805at 16.347 kb on + strand, within EX31_RS16805at 16.348 kb on - strand, within EX31_RS16805at 16.421 kb on + strandat 16.422 kb on - strandat 16.513 kb on - strand, within EX31_RS16810at 16.531 kb on + strand, within EX31_RS16810at 16.531 kb on + strand, within EX31_RS16810at 16.533 kb on + strand, within EX31_RS16810at 16.533 kb on + strand, within EX31_RS16810at 16.623 kb on + strand, within EX31_RS16810at 16.624 kb on - strand, within EX31_RS16810at 16.624 kb on - strand, within EX31_RS16810at 16.624 kb on - strand, within EX31_RS16810at 16.624 kb on - strand, within EX31_RS16810at 16.624 kb on - strand, within EX31_RS16810at 16.668 kb on + strand, within EX31_RS16810at 16.669 kb on - strand, within EX31_RS16810at 16.669 kb on - strand, within EX31_RS16810at 16.692 kb on + strand, within EX31_RS16810at 16.692 kb on + strand, within EX31_RS16810

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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14,561 + EX31_RS16790 0.87 -0.8
14,562 - EX31_RS16790 0.87 -0.6
14,661 + -0.4
14,673 + -0.6
14,673 + -0.8
14,674 - +0.9
14,674 - +0.4
14,712 + +0.7
14,712 + +0.4
14,713 - -0.1
14,713 - +0.0
14,713 - +0.3
14,735 + +0.5
14,736 - +0.2
14,736 - +0.8
14,791 - -0.3
15,184 + EX31_RS16795 0.60 -0.0
15,258 + EX31_RS16795 0.70 +0.6
15,258 + EX31_RS16795 0.70 -1.2
15,259 - EX31_RS16795 0.70 +0.8
15,279 - EX31_RS16795 0.72 +0.2
15,290 + EX31_RS16795 0.74 +0.6
15,290 + EX31_RS16795 0.74 -0.2
15,290 + EX31_RS16795 0.74 -0.4
15,291 - EX31_RS16795 0.74 +0.4
15,291 - EX31_RS16795 0.74 -1.0
15,335 + EX31_RS16795 0.79 -1.0
15,335 + EX31_RS16795 0.79 +0.5
15,336 - EX31_RS16795 0.80 -0.6
15,336 - EX31_RS16795 0.80 +0.7
15,336 - EX31_RS16795 0.80 +0.4
15,336 - EX31_RS16795 0.80 -0.2
15,336 - EX31_RS16795 0.80 -0.0
15,336 - EX31_RS16795 0.80 -0.7
15,336 - EX31_RS16795 0.80 -0.4
15,377 + EX31_RS16795 0.85 -0.0
15,476 + -0.7
15,476 + +0.1
15,477 - +0.7
15,477 - +0.3
15,477 - -0.4
15,490 - +0.0
15,564 + EX31_RS16800 0.34 -0.7
15,565 - EX31_RS16800 0.34 -0.2
15,565 - EX31_RS16800 0.34 -0.2
15,617 - EX31_RS16800 0.60 -1.0
15,617 - EX31_RS16800 0.60 +0.1
15,641 - EX31_RS16800 0.72 -0.7
15,641 - EX31_RS16800 0.72 +0.1
15,641 - EX31_RS16800 0.72 -0.3
15,780 + EX31_RS16805 0.12 +0.1
15,781 - EX31_RS16805 0.12 -0.3
15,781 - EX31_RS16805 0.12 -0.3
15,781 - EX31_RS16805 0.12 +1.0
15,845 + EX31_RS16805 0.20 +0.1
15,846 - EX31_RS16805 0.20 +0.2
15,846 - EX31_RS16805 0.20 -0.4
15,846 - EX31_RS16805 0.20 +0.4
15,846 - EX31_RS16805 0.20 +1.5
15,846 - EX31_RS16805 0.20 +0.2
15,846 - EX31_RS16805 0.20 -1.5
15,884 + EX31_RS16805 0.25 +0.8
15,885 - EX31_RS16805 0.26 -0.1
15,885 - EX31_RS16805 0.26 -0.1
15,900 + EX31_RS16805 0.28 +0.1
15,920 - EX31_RS16805 0.30 -0.2
15,921 + EX31_RS16805 0.30 +0.4
15,921 + EX31_RS16805 0.30 -0.8
15,921 + EX31_RS16805 0.30 -0.1
15,922 - EX31_RS16805 0.31 -0.5
15,922 - EX31_RS16805 0.31 +0.3
15,922 - EX31_RS16805 0.31 -0.0
15,922 - EX31_RS16805 0.31 +0.1
15,922 - EX31_RS16805 0.31 +0.6
15,922 - EX31_RS16805 0.31 -0.3
15,931 + EX31_RS16805 0.32 +0.2
16,011 - EX31_RS16805 0.42 -0.7
16,011 - EX31_RS16805 0.42 -0.4
16,031 + EX31_RS16805 0.45 -1.6
16,032 - EX31_RS16805 0.45 +0.1
16,035 - EX31_RS16805 0.46 +0.8
16,058 + EX31_RS16805 0.49 +0.6
16,058 + EX31_RS16805 0.49 +0.7
16,214 + EX31_RS16805 0.69 -0.9
16,247 + EX31_RS16805 0.74 -0.3
16,248 - EX31_RS16805 0.74 -0.1
16,248 - EX31_RS16805 0.74 -0.6
16,280 + EX31_RS16805 0.78 +1.0
16,280 + EX31_RS16805 0.78 +0.9
16,280 + EX31_RS16805 0.78 -0.0
16,281 - EX31_RS16805 0.78 -0.1
16,281 - EX31_RS16805 0.78 +0.3
16,281 - EX31_RS16805 0.78 -0.0
16,281 - EX31_RS16805 0.78 +0.4
16,284 + EX31_RS16805 0.79 -0.5
16,284 + EX31_RS16805 0.79 -0.0
16,284 + EX31_RS16805 0.79 -0.3
16,285 - EX31_RS16805 0.79 +0.1
16,285 - EX31_RS16805 0.79 -2.1
16,285 - EX31_RS16805 0.79 +0.5
16,285 - EX31_RS16805 0.79 -1.1
16,285 - EX31_RS16805 0.79 -0.9
16,303 + EX31_RS16805 0.81 +0.2
16,303 + EX31_RS16805 0.81 +0.0
16,303 + EX31_RS16805 0.81 +0.1
16,304 - EX31_RS16805 0.81 +0.2
16,304 - EX31_RS16805 0.81 +0.1
16,304 - EX31_RS16805 0.81 -0.2
16,304 - EX31_RS16805 0.81 +0.2
16,347 + EX31_RS16805 0.87 -0.1
16,348 - EX31_RS16805 0.87 -0.6
16,421 + -0.8
16,422 - +0.1
16,513 - EX31_RS16810 0.12 +0.1
16,531 + EX31_RS16810 0.15 +0.0
16,531 + EX31_RS16810 0.15 +0.5
16,533 + EX31_RS16810 0.15 +0.3
16,533 + EX31_RS16810 0.15 +0.7
16,623 + EX31_RS16810 0.29 -0.0
16,624 - EX31_RS16810 0.29 -0.8
16,624 - EX31_RS16810 0.29 -0.6
16,624 - EX31_RS16810 0.29 +0.3
16,624 - EX31_RS16810 0.29 -0.8
16,624 - EX31_RS16810 0.29 +0.5
16,668 + EX31_RS16810 0.36 -0.1
16,669 - EX31_RS16810 0.36 -0.1
16,669 - EX31_RS16810 0.36 -0.0
16,692 + EX31_RS16810 0.39 +0.2
16,692 + EX31_RS16810 0.39 -0.5

Or see this region's nucleotide sequence