Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13925 and EX31_RS13930 are separated by 327 nucleotides EX31_RS13930 and EX31_RS13935 are separated by 435 nucleotides
EX31_RS13925: EX31_RS13925 - FAD-binding oxidoreductase, at 43,555 to 46,611
_RS13925
EX31_RS13930: EX31_RS13930 - AI-2E family transporter YdiK, at 46,939 to 48,036
_RS13930
EX31_RS13935: EX31_RS13935 - phosphoenolpyruvate synthase, at 48,472 to 50,847
_RS13935
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.294 kb on - strand, within EX31_RS13925 at 46.294 kb on - strand, within EX31_RS13925 at 46.294 kb on - strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.305 kb on + strand, within EX31_RS13925 at 46.306 kb on - strand at 46.306 kb on - strand at 46.306 kb on - strand at 46.445 kb on - strand at 46.470 kb on - strand at 46.509 kb on - strand at 46.509 kb on - strand at 46.509 kb on - strand at 46.530 kb on + strand at 46.547 kb on - strand at 46.617 kb on + strand at 46.618 kb on - strand at 46.618 kb on - strand at 46.636 kb on + strand at 46.636 kb on + strand at 46.636 kb on + strand at 46.636 kb on + strand at 46.636 kb on + strand at 46.637 kb on - strand at 46.637 kb on - strand at 46.637 kb on - strand at 46.637 kb on - strand at 46.637 kb on - strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.772 kb on + strand at 46.772 kb on + strand at 46.789 kb on - strand at 46.810 kb on + strand at 46.810 kb on + strand at 46.810 kb on + strand at 46.811 kb on - strand at 46.811 kb on - strand at 46.811 kb on - strand at 46.811 kb on - strand at 46.811 kb on - strand at 46.811 kb on - strand at 46.814 kb on + strand at 46.814 kb on + strand at 46.814 kb on + strand at 46.814 kb on + strand at 46.815 kb on - strand at 46.815 kb on - strand at 46.815 kb on - strand at 46.842 kb on + strand at 46.855 kb on + strand at 46.856 kb on - strand at 46.879 kb on + strand at 46.880 kb on - strand at 46.880 kb on - strand at 46.880 kb on - strand at 46.881 kb on + strand at 46.881 kb on + strand at 46.881 kb on + strand at 46.881 kb on + strand at 46.881 kb on + strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.882 kb on - strand at 46.910 kb on + strand at 46.910 kb on + strand at 46.911 kb on - strand at 46.911 kb on - strand at 46.920 kb on - strand at 46.953 kb on + strand at 46.991 kb on + strand at 46.991 kb on + strand at 46.992 kb on - strand at 46.995 kb on + strand at 46.996 kb on - strand at 46.996 kb on - strand at 47.031 kb on - strand at 47.031 kb on - strand at 47.040 kb on + strand at 47.041 kb on - strand at 47.166 kb on - strand, within EX31_RS13930 at 47.166 kb on - strand, within EX31_RS13930 at 47.255 kb on + strand, within EX31_RS13930 at 47.255 kb on + strand, within EX31_RS13930 at 47.255 kb on + strand, within EX31_RS13930 at 47.255 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.259 kb on + strand, within EX31_RS13930 at 47.260 kb on - strand, within EX31_RS13930 at 47.260 kb on - strand, within EX31_RS13930 at 47.260 kb on - strand, within EX31_RS13930 at 47.301 kb on + strand, within EX31_RS13930 at 47.302 kb on - strand, within EX31_RS13930 at 47.304 kb on + strand, within EX31_RS13930 at 47.304 kb on + strand, within EX31_RS13930 at 47.305 kb on - strand, within EX31_RS13930 at 47.311 kb on + strand, within EX31_RS13930 at 47.311 kb on + strand, within EX31_RS13930 at 47.312 kb on - strand, within EX31_RS13930 at 47.374 kb on + strand, within EX31_RS13930 at 47.453 kb on + strand, within EX31_RS13930 at 47.453 kb on + strand, within EX31_RS13930 at 47.473 kb on + strand, within EX31_RS13930 at 47.502 kb on + strand, within EX31_RS13930 at 47.554 kb on - strand, within EX31_RS13930 at 47.554 kb on - strand, within EX31_RS13930 at 47.602 kb on - strand, within EX31_RS13930 at 47.621 kb on + strand, within EX31_RS13930 at 47.621 kb on + strand, within EX31_RS13930 at 47.621 kb on + strand, within EX31_RS13930 at 47.659 kb on + strand, within EX31_RS13930 at 47.660 kb on - strand, within EX31_RS13930 at 47.749 kb on + strand, within EX31_RS13930 at 47.766 kb on + strand, within EX31_RS13930 at 47.817 kb on + strand, within EX31_RS13930 at 47.858 kb on + strand, within EX31_RS13930 at 47.872 kb on - strand, within EX31_RS13930 at 47.872 kb on - strand, within EX31_RS13930 at 47.897 kb on + strand, within EX31_RS13930 at 48.017 kb on + strand at 48.167 kb on + strand at 48.171 kb on - strand at 48.174 kb on + strand at 48.197 kb on - strand at 48.197 kb on - strand at 48.201 kb on - strand at 48.214 kb on + strand at 48.220 kb on + strand at 48.223 kb on + strand at 48.251 kb on + strand at 48.279 kb on + strand at 48.355 kb on + strand at 48.449 kb on - strand at 48.462 kb on - strand at 48.470 kb on - strand at 48.597 kb on + strand at 48.605 kb on + strand at 48.606 kb on - strand at 48.622 kb on - strand at 48.739 kb on - strand, within EX31_RS13935 at 48.739 kb on - strand, within EX31_RS13935 at 48.748 kb on - strand, within EX31_RS13935 at 48.802 kb on + strand, within EX31_RS13935 at 48.816 kb on + strand, within EX31_RS13935 at 49.007 kb on + strand, within EX31_RS13935 at 49.008 kb on - strand, within EX31_RS13935 at 49.008 kb on - strand, within EX31_RS13935
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 46,294 - EX31_RS13925 0.90 +0.8 46,294 - EX31_RS13925 0.90 +0.4 46,294 - EX31_RS13925 0.90 -0.7 46,305 + EX31_RS13925 0.90 +0.4 46,305 + EX31_RS13925 0.90 +1.2 46,305 + EX31_RS13925 0.90 -1.1 46,305 + EX31_RS13925 0.90 -0.4 46,305 + EX31_RS13925 0.90 -0.9 46,305 + EX31_RS13925 0.90 -0.5 46,306 - +0.1 46,306 - -0.7 46,306 - -2.8 46,445 - +0.2 46,470 - -0.6 46,509 - -2.6 46,509 - +0.1 46,509 - -0.1 46,530 + +0.3 46,547 - +0.2 46,617 + -0.1 46,618 - -0.1 46,618 - -0.7 46,636 + -0.1 46,636 + +0.5 46,636 + +0.4 46,636 + +0.3 46,636 + +0.5 46,637 - +0.4 46,637 - -2.8 46,637 - -0.1 46,637 - +0.4 46,637 - -0.3 46,716 + +0.3 46,716 + -1.1 46,716 + -0.7 46,716 + -1.5 46,716 + +1.2 46,716 + -1.3 46,716 + -0.7 46,717 - +0.7 46,717 - -1.1 46,717 - +0.7 46,717 - -0.8 46,717 - +0.9 46,717 - -0.9 46,717 - -0.7 46,717 - -0.0 46,717 - +1.1 46,717 - +0.9 46,772 + -0.9 46,772 + +0.1 46,789 - +0.7 46,810 + +0.4 46,810 + +1.6 46,810 + +0.3 46,811 - +0.6 46,811 - +0.5 46,811 - +0.4 46,811 - +0.3 46,811 - +0.1 46,811 - +0.6 46,814 + +0.6 46,814 + +0.6 46,814 + -1.0 46,814 + +0.3 46,815 - -0.3 46,815 - -0.9 46,815 - +0.3 46,842 + +0.3 46,855 + -0.4 46,856 - -1.4 46,879 + +0.2 46,880 - +0.1 46,880 - +1.1 46,880 - +0.5 46,881 + +0.1 46,881 + +0.6 46,881 + -0.4 46,881 + +0.3 46,881 + +0.4 46,882 - +2.0 46,882 - +0.2 46,882 - +0.2 46,882 - +0.1 46,882 - +0.8 46,882 - -0.6 46,882 - -0.2 46,882 - +0.4 46,910 + +1.1 46,910 + +0.5 46,911 - -0.8 46,911 - -1.1 46,920 - +1.2 46,953 + -1.4 46,991 + -0.4 46,991 + -0.7 46,992 - +0.0 46,995 + +0.9 46,996 - +0.2 46,996 - +0.2 47,031 - +0.1 47,031 - -0.9 47,040 + -0.0 47,041 - -0.5 47,166 - EX31_RS13930 0.21 -0.7 47,166 - EX31_RS13930 0.21 -0.1 47,255 + EX31_RS13930 0.29 -0.3 47,255 + EX31_RS13930 0.29 -0.8 47,255 + EX31_RS13930 0.29 +0.0 47,255 + EX31_RS13930 0.29 -0.1 47,259 + EX31_RS13930 0.29 -0.8 47,259 + EX31_RS13930 0.29 -0.5 47,259 + EX31_RS13930 0.29 +0.4 47,259 + EX31_RS13930 0.29 +1.5 47,259 + EX31_RS13930 0.29 -0.3 47,259 + EX31_RS13930 0.29 -2.1 47,259 + EX31_RS13930 0.29 -0.3 47,259 + EX31_RS13930 0.29 -0.3 47,259 + EX31_RS13930 0.29 -0.3 47,259 + EX31_RS13930 0.29 -0.1 47,259 + EX31_RS13930 0.29 -0.1 47,260 - EX31_RS13930 0.29 -0.7 47,260 - EX31_RS13930 0.29 -0.7 47,260 - EX31_RS13930 0.29 -0.5 47,301 + EX31_RS13930 0.33 -0.6 47,302 - EX31_RS13930 0.33 -1.3 47,304 + EX31_RS13930 0.33 -0.5 47,304 + EX31_RS13930 0.33 +0.2 47,305 - EX31_RS13930 0.33 -0.4 47,311 + EX31_RS13930 0.34 -2.0 47,311 + EX31_RS13930 0.34 -0.4 47,312 - EX31_RS13930 0.34 +0.0 47,374 + EX31_RS13930 0.40 -0.3 47,453 + EX31_RS13930 0.47 +0.2 47,453 + EX31_RS13930 0.47 -1.3 47,473 + EX31_RS13930 0.49 +0.2 47,502 + EX31_RS13930 0.51 -0.4 47,554 - EX31_RS13930 0.56 -0.8 47,554 - EX31_RS13930 0.56 -0.0 47,602 - EX31_RS13930 0.60 -0.5 47,621 + EX31_RS13930 0.62 -0.5 47,621 + EX31_RS13930 0.62 -0.3 47,621 + EX31_RS13930 0.62 -0.1 47,659 + EX31_RS13930 0.66 +0.6 47,660 - EX31_RS13930 0.66 -0.8 47,749 + EX31_RS13930 0.74 -0.3 47,766 + EX31_RS13930 0.75 -0.6 47,817 + EX31_RS13930 0.80 -0.9 47,858 + EX31_RS13930 0.84 +0.2 47,872 - EX31_RS13930 0.85 +0.6 47,872 - EX31_RS13930 0.85 +0.1 47,897 + EX31_RS13930 0.87 -1.1 48,017 + +0.5 48,167 + -0.7 48,171 - +0.6 48,174 + +0.2 48,197 - +0.6 48,197 - +0.5 48,201 - +0.1 48,214 + +1.5 48,220 + -0.1 48,223 + -0.2 48,251 + +1.0 48,279 + +0.3 48,355 + -0.4 48,449 - +0.3 48,462 - -1.4 48,470 - +0.7 48,597 + +0.1 48,605 + -0.5 48,606 - +0.0 48,622 - -0.9 48,739 - EX31_RS13935 0.11 -0.9 48,739 - EX31_RS13935 0.11 -0.4 48,748 - EX31_RS13935 0.12 -1.6 48,802 + EX31_RS13935 0.14 +0.5 48,816 + EX31_RS13935 0.14 -1.2 49,007 + EX31_RS13935 0.23 +0.0 49,008 - EX31_RS13935 0.23 -0.3 49,008 - EX31_RS13935 0.23 +0.3
Or see this region's nucleotide sequence