Strain Fitness in Rahnella sp. WP5 around EX31_RS13415

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13405 and EX31_RS13410 are separated by 75 nucleotidesEX31_RS13410 and EX31_RS13415 are separated by 132 nucleotidesEX31_RS13415 and EX31_RS13420 are separated by 55 nucleotides EX31_RS13405: EX31_RS13405 - sugar transporter, at 116,015 to 117,199 _RS13405 EX31_RS13410: EX31_RS13410 - DUF2000 domain-containing protein, at 117,275 to 117,691 _RS13410 EX31_RS13415: EX31_RS13415 - Lrp/AsnC family transcriptional regulator, at 117,824 to 118,300 _RS13415 EX31_RS13420: EX31_RS13420 - amidohydrolase, at 118,356 to 119,459 _RS13420 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 116.872 kb on + strand, within EX31_RS13405at 116.872 kb on + strand, within EX31_RS13405at 116.872 kb on + strand, within EX31_RS13405at 116.873 kb on - strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.929 kb on + strand, within EX31_RS13405at 116.930 kb on - strand, within EX31_RS13405at 116.930 kb on - strand, within EX31_RS13405at 116.930 kb on - strand, within EX31_RS13405at 116.930 kb on - strand, within EX31_RS13405at 116.933 kb on - strand, within EX31_RS13405at 116.933 kb on - strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.038 kb on + strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.039 kb on - strand, within EX31_RS13405at 117.041 kb on - strand, within EX31_RS13405at 117.041 kb on - strand, within EX31_RS13405at 117.255 kb on - strandat 117.257 kb on - strandat 117.262 kb on + strandat 117.263 kb on - strandat 117.263 kb on - strandat 117.263 kb on - strandat 117.276 kb on + strandat 117.310 kb on + strandat 117.361 kb on - strand, within EX31_RS13410at 117.361 kb on - strand, within EX31_RS13410at 117.361 kb on - strand, within EX31_RS13410at 117.362 kb on + strand, within EX31_RS13410at 117.362 kb on + strand, within EX31_RS13410at 117.362 kb on + strand, within EX31_RS13410at 117.363 kb on - strand, within EX31_RS13410at 117.363 kb on - strand, within EX31_RS13410at 117.363 kb on - strand, within EX31_RS13410at 117.363 kb on - strand, within EX31_RS13410at 117.470 kb on - strand, within EX31_RS13410at 117.470 kb on - strand, within EX31_RS13410at 117.484 kb on + strand, within EX31_RS13410at 117.485 kb on - strand, within EX31_RS13410at 117.485 kb on - strand, within EX31_RS13410at 117.527 kb on - strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.532 kb on + strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.533 kb on - strand, within EX31_RS13410at 117.535 kb on + strand, within EX31_RS13410at 117.615 kb on - strand, within EX31_RS13410at 117.615 kb on - strand, within EX31_RS13410at 117.615 kb on - strand, within EX31_RS13410at 117.665 kb on - strandat 117.682 kb on + strandat 117.682 kb on + strandat 117.683 kb on - strandat 117.683 kb on - strandat 117.683 kb on - strandat 117.712 kb on + strandat 117.712 kb on + strandat 117.712 kb on + strandat 117.769 kb on + strandat 117.769 kb on + strandat 117.779 kb on + strandat 117.811 kb on + strandat 117.812 kb on - strandat 117.823 kb on + strandat 117.823 kb on + strandat 117.832 kb on - strandat 117.975 kb on + strand, within EX31_RS13415at 117.975 kb on + strand, within EX31_RS13415at 117.975 kb on + strand, within EX31_RS13415at 117.975 kb on + strand, within EX31_RS13415at 118.124 kb on + strand, within EX31_RS13415at 118.298 kb on + strandat 118.298 kb on + strandat 118.299 kb on - strandat 118.299 kb on - strandat 118.385 kb on + strandat 118.386 kb on - strandat 118.386 kb on - strandat 118.386 kb on - strandat 118.386 kb on - strandat 118.386 kb on - strandat 118.430 kb on + strandat 118.430 kb on + strandat 118.431 kb on - strandat 118.487 kb on + strand, within EX31_RS13420at 118.510 kb on + strand, within EX31_RS13420at 118.511 kb on - strand, within EX31_RS13420at 118.511 kb on - strand, within EX31_RS13420at 118.580 kb on + strand, within EX31_RS13420at 118.606 kb on - strand, within EX31_RS13420at 118.828 kb on + strand, within EX31_RS13420at 118.828 kb on + strand, within EX31_RS13420at 118.828 kb on + strand, within EX31_RS13420at 118.828 kb on + strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.829 kb on - strand, within EX31_RS13420at 118.853 kb on + strand, within EX31_RS13420at 118.853 kb on + strand, within EX31_RS13420at 118.853 kb on + strand, within EX31_RS13420at 118.853 kb on + strand, within EX31_RS13420at 118.854 kb on - strand, within EX31_RS13420at 118.856 kb on + strand, within EX31_RS13420at 118.856 kb on + strand, within EX31_RS13420at 118.856 kb on + strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.857 kb on - strand, within EX31_RS13420at 118.972 kb on + strand, within EX31_RS13420at 118.972 kb on + strand, within EX31_RS13420at 118.973 kb on - strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.975 kb on + strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 118.976 kb on - strand, within EX31_RS13420at 119.042 kb on + strand, within EX31_RS13420at 119.042 kb on + strand, within EX31_RS13420at 119.138 kb on + strand, within EX31_RS13420at 119.139 kb on - strand, within EX31_RS13420at 119.144 kb on + strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.145 kb on - strand, within EX31_RS13420at 119.210 kb on + strand, within EX31_RS13420at 119.211 kb on - strand, within EX31_RS13420at 119.211 kb on - strand, within EX31_RS13420

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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116,872 + EX31_RS13405 0.72 -0.3
116,872 + EX31_RS13405 0.72 +1.2
116,872 + EX31_RS13405 0.72 +0.1
116,873 - EX31_RS13405 0.72 -0.6
116,929 + EX31_RS13405 0.77 -0.3
116,929 + EX31_RS13405 0.77 +0.2
116,929 + EX31_RS13405 0.77 +0.1
116,929 + EX31_RS13405 0.77 -0.1
116,929 + EX31_RS13405 0.77 +2.6
116,929 + EX31_RS13405 0.77 +0.7
116,930 - EX31_RS13405 0.77 +0.3
116,930 - EX31_RS13405 0.77 -3.1
116,930 - EX31_RS13405 0.77 +0.8
116,930 - EX31_RS13405 0.77 -0.6
116,933 - EX31_RS13405 0.77 +0.9
116,933 - EX31_RS13405 0.77 +0.1
117,038 + EX31_RS13405 0.86 +0.1
117,038 + EX31_RS13405 0.86 +0.4
117,038 + EX31_RS13405 0.86 -0.4
117,038 + EX31_RS13405 0.86 +0.1
117,038 + EX31_RS13405 0.86 -1.6
117,038 + EX31_RS13405 0.86 -1.2
117,038 + EX31_RS13405 0.86 -0.0
117,038 + EX31_RS13405 0.86 -0.2
117,038 + EX31_RS13405 0.86 -2.2
117,038 + EX31_RS13405 0.86 -0.6
117,038 + EX31_RS13405 0.86 +0.5
117,039 - EX31_RS13405 0.86 -1.6
117,039 - EX31_RS13405 0.86 -0.1
117,039 - EX31_RS13405 0.86 -0.3
117,039 - EX31_RS13405 0.86 -0.3
117,039 - EX31_RS13405 0.86 -0.1
117,039 - EX31_RS13405 0.86 -0.6
117,039 - EX31_RS13405 0.86 -0.0
117,039 - EX31_RS13405 0.86 +0.6
117,039 - EX31_RS13405 0.86 +0.4
117,039 - EX31_RS13405 0.86 -0.5
117,041 - EX31_RS13405 0.87 -0.7
117,041 - EX31_RS13405 0.87 +0.7
117,255 - -0.6
117,257 - +0.1
117,262 + -0.3
117,263 - -1.8
117,263 - -0.4
117,263 - -2.1
117,276 + -0.3
117,310 + -0.2
117,361 - EX31_RS13410 0.21 +0.0
117,361 - EX31_RS13410 0.21 +0.6
117,361 - EX31_RS13410 0.21 -0.2
117,362 + EX31_RS13410 0.21 -0.2
117,362 + EX31_RS13410 0.21 -0.3
117,362 + EX31_RS13410 0.21 -0.7
117,363 - EX31_RS13410 0.21 +0.0
117,363 - EX31_RS13410 0.21 -0.6
117,363 - EX31_RS13410 0.21 +0.8
117,363 - EX31_RS13410 0.21 -0.1
117,470 - EX31_RS13410 0.47 -0.1
117,470 - EX31_RS13410 0.47 -0.3
117,484 + EX31_RS13410 0.50 -0.2
117,485 - EX31_RS13410 0.50 +0.3
117,485 - EX31_RS13410 0.50 +0.1
117,527 - EX31_RS13410 0.60 -0.6
117,532 + EX31_RS13410 0.62 -0.4
117,532 + EX31_RS13410 0.62 -1.0
117,532 + EX31_RS13410 0.62 -1.2
117,532 + EX31_RS13410 0.62 -0.3
117,532 + EX31_RS13410 0.62 -1.3
117,532 + EX31_RS13410 0.62 -0.4
117,532 + EX31_RS13410 0.62 +0.3
117,532 + EX31_RS13410 0.62 +0.4
117,533 - EX31_RS13410 0.62 +0.1
117,533 - EX31_RS13410 0.62 -0.3
117,533 - EX31_RS13410 0.62 +0.5
117,533 - EX31_RS13410 0.62 -0.6
117,533 - EX31_RS13410 0.62 +0.0
117,533 - EX31_RS13410 0.62 +0.0
117,535 + EX31_RS13410 0.62 +0.0
117,615 - EX31_RS13410 0.82 -0.1
117,615 - EX31_RS13410 0.82 +0.2
117,615 - EX31_RS13410 0.82 +1.3
117,665 - +0.1
117,682 + -0.6
117,682 + +1.2
117,683 - +0.2
117,683 - -0.5
117,683 - -0.1
117,712 + -0.5
117,712 + +0.2
117,712 + -0.6
117,769 + +0.2
117,769 + -0.7
117,779 + -0.1
117,811 + +0.5
117,812 - -0.5
117,823 + +0.7
117,823 + +0.1
117,832 - +0.9
117,975 + EX31_RS13415 0.32 -0.5
117,975 + EX31_RS13415 0.32 -0.5
117,975 + EX31_RS13415 0.32 -0.2
117,975 + EX31_RS13415 0.32 -1.3
118,124 + EX31_RS13415 0.63 +0.2
118,298 + -0.4
118,298 + +0.7
118,299 - +0.4
118,299 - +0.6
118,385 + +0.7
118,386 - -0.2
118,386 - +0.6
118,386 - -0.2
118,386 - +1.1
118,386 - -2.1
118,430 + +0.7
118,430 + -0.3
118,431 - +0.6
118,487 + EX31_RS13420 0.12 -1.2
118,510 + EX31_RS13420 0.14 +0.3
118,511 - EX31_RS13420 0.14 -0.4
118,511 - EX31_RS13420 0.14 -0.5
118,580 + EX31_RS13420 0.20 +0.6
118,606 - EX31_RS13420 0.23 +1.5
118,828 + EX31_RS13420 0.43 +0.3
118,828 + EX31_RS13420 0.43 +0.6
118,828 + EX31_RS13420 0.43 -0.2
118,828 + EX31_RS13420 0.43 -0.1
118,829 - EX31_RS13420 0.43 -0.9
118,829 - EX31_RS13420 0.43 +0.9
118,829 - EX31_RS13420 0.43 -0.3
118,829 - EX31_RS13420 0.43 +0.8
118,829 - EX31_RS13420 0.43 +0.2
118,829 - EX31_RS13420 0.43 -0.2
118,853 + EX31_RS13420 0.45 -0.4
118,853 + EX31_RS13420 0.45 -0.3
118,853 + EX31_RS13420 0.45 -0.0
118,853 + EX31_RS13420 0.45 +0.7
118,854 - EX31_RS13420 0.45 -0.1
118,856 + EX31_RS13420 0.45 +0.1
118,856 + EX31_RS13420 0.45 -2.2
118,856 + EX31_RS13420 0.45 -0.8
118,857 - EX31_RS13420 0.45 -2.3
118,857 - EX31_RS13420 0.45 -0.9
118,857 - EX31_RS13420 0.45 -0.4
118,857 - EX31_RS13420 0.45 -0.9
118,857 - EX31_RS13420 0.45 +0.1
118,857 - EX31_RS13420 0.45 -0.3
118,857 - EX31_RS13420 0.45 -0.4
118,857 - EX31_RS13420 0.45 -0.4
118,972 + EX31_RS13420 0.56 +0.3
118,972 + EX31_RS13420 0.56 -0.4
118,973 - EX31_RS13420 0.56 +0.1
118,975 + EX31_RS13420 0.56 +0.2
118,975 + EX31_RS13420 0.56 +0.1
118,975 + EX31_RS13420 0.56 +0.1
118,975 + EX31_RS13420 0.56 -0.9
118,975 + EX31_RS13420 0.56 +0.5
118,975 + EX31_RS13420 0.56 -0.8
118,975 + EX31_RS13420 0.56 -0.0
118,975 + EX31_RS13420 0.56 +0.1
118,975 + EX31_RS13420 0.56 +1.3
118,976 - EX31_RS13420 0.56 +0.4
118,976 - EX31_RS13420 0.56 -0.1
118,976 - EX31_RS13420 0.56 +0.6
118,976 - EX31_RS13420 0.56 -0.6
118,976 - EX31_RS13420 0.56 -0.2
118,976 - EX31_RS13420 0.56 +0.3
118,976 - EX31_RS13420 0.56 +0.1
118,976 - EX31_RS13420 0.56 -1.0
118,976 - EX31_RS13420 0.56 +0.7
118,976 - EX31_RS13420 0.56 -0.5
118,976 - EX31_RS13420 0.56 -1.1
118,976 - EX31_RS13420 0.56 -1.6
118,976 - EX31_RS13420 0.56 -0.7
118,976 - EX31_RS13420 0.56 +0.8
118,976 - EX31_RS13420 0.56 -0.5
118,976 - EX31_RS13420 0.56 -0.0
119,042 + EX31_RS13420 0.62 -1.1
119,042 + EX31_RS13420 0.62 +0.2
119,138 + EX31_RS13420 0.71 +0.4
119,139 - EX31_RS13420 0.71 -0.2
119,144 + EX31_RS13420 0.71 +0.2
119,145 - EX31_RS13420 0.71 -0.7
119,145 - EX31_RS13420 0.71 -0.3
119,145 - EX31_RS13420 0.71 -1.0
119,145 - EX31_RS13420 0.71 +0.2
119,145 - EX31_RS13420 0.71 +0.6
119,210 + EX31_RS13420 0.77 -0.2
119,211 - EX31_RS13420 0.77 -0.1
119,211 - EX31_RS13420 0.77 -0.5

Or see this region's nucleotide sequence